genome.fa.s7.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  104  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32230786--32230828	19	2.2	20	83	4	52	37	9	18	34	1.83
32231305--32231345	21	2.0	21	95	0	73	26	41	19	12	1.87
32231366--32231405	17	2.4	17	100	0	80	15	40	27	17	1.89
32246194--32246226	17	1.9	18	88	11	52	45	0	12	42	1.41
32248358--32248406	17	2.8	17	81	3	62	14	6	6	73	1.22
32248758--32248790	14	2.4	14	95	5	59	21	0	6	72	1.05
32250982--32251033	24	2.2	24	89	6	79	34	7	23	34	1.83
32251788--32252521	49	15.3	49	94	3	1248	32	8	28	29	1.86
32251784--32252521	47	15.4	47	94	2	1233	32	8	28	29	1.86
32251788--32252521	96	7.6	96	95	1	1255	32	8	28	29	1.86
32256135--32256301	75	2.2	75	84	4	212	40	26	11	21	1.87
32256135--32256288	25	6.2	25	65	11	82	40	26	10	22	1.86
32268185--32268255	35	2.0	35	88	0	106	28	15	15	40	1.88
32275780--32276050	137	2.0	136	93	2	413	42	12	12	31	1.81
32282624--32282698	36	2.1	36	94	0	132	22	16	18	42	1.88
32285473--32285519	19	2.4	20	86	10	62	2	25	0	72	0.96
32288936--32289010	36	2.1	36	94	0	132	44	17	16	22	1.87
32294284--32294459	46	3.8	45	78	10	212	21	20	28	28	1.98
32294281--32294451	93	1.8	93	94	0	306	21	21	29	28	1.98
32303349--32303382	7	4.9	7	86	13	52	14	0	0	85	0.60
32303349--32303379	13	2.3	14	94	5	55	12	0	0	87	0.55
32304922--32305012	34	2.7	33	77	12	105	38	14	18	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32304922--32305145	67	3.4	67	83	3	281	38	14	16	29	1.89
32311242--32311287	21	2.2	21	100	0	92	23	6	23	45	1.76
32315851--32315887	17	2.2	17	100	0	74	54	5	16	24	1.63
32317463--32317525	30	2.1	30	96	0	117	46	14	3	36	1.61
32318157--32318195	21	1.9	19	90	10	60	51	2	0	46	1.14
32325648--32325816	50	3.4	50	89	4	250	35	15	23	25	1.94
32325800--32326072	31	8.8	31	93	0	438	28	22	25	23	1.99
32326090--32326255	47	3.7	46	84	4	160	31	15	24	29	1.95
32326184--32326296	42	2.7	42	90	0	163	31	15	24	28	1.95
32328446--32328540	47	2.0	47	95	0	172	32	11	14	41	1.82
32335586--32335628	17	2.5	17	76	3	50	53	0	2	44	1.13
32335578--32335631	28	2.0	28	85	3	74	51	0	1	46	1.11
32335847--32335880	16	2.1	16	94	0	59	35	0	2	61	1.11
32340543--32340655	40	2.8	40	85	2	156	31	19	20	28	1.97
32340708--32340842	40	3.4	40	86	2	182	28	21	22	28	1.99
32340561--32340936	175	2.1	182	85	4	505	31	20	21	27	1.98
32340776--32340948	96	1.8	95	88	1	265	31	19	21	26	1.98
32341315--32341428	7	16.0	7	71	3	75	22	0	27	49	1.56
32342742--32342919	46	3.7	46	78	12	205	28	29	20	21	1.98
32344674--32344750	35	2.2	35	95	2	138	14	2	7	75	1.13
32345592--32345642	24	2.1	24	96	0	93	27	23	11	37	1.90
32346967--32347023	28	2.0	28	100	0	114	24	24	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32351054--32351092	19	2.1	19	95	0	69	41	33	0	25	1.56
32353432--32353474	22	2.0	22	90	0	68	34	2	16	46	1.60
32356426--32356468	22	2.0	22	90	0	68	34	2	16	46	1.60
32358711--32358851	42	3.4	42	84	2	167	26	13	26	32	1.94
32358733--32358877	43	3.4	42	81	2	157	27	12	24	35	1.92
32358711--32358877	85	2.0	85	83	4	212	26	13	25	34	1.93
32358701--32358885	42	4.4	42	80	4	158	24	13	25	35	1.92
32362076--32362111	17	2.1	17	89	0	54	38	5	13	41	1.68
32366190--32366307	43	2.8	42	78	1	128	33	23	16	25	1.96
32368081--32368150	34	2.1	34	100	0	140	34	14	24	27	1.94
32373463--32373557	42	2.2	43	80	9	106	31	25	18	24	1.98
32377474--32377518	19	2.3	20	78	14	51	73	0	22	4	1.01
32379195--32379256	26	2.4	26	86	0	88	54	4	11	29	1.56
32383435--32383470	17	2.2	17	90	5	56	52	0	0	47	1.00
32385256--32385294	20	2.0	20	90	5	62	74	7	0	17	1.05
32390191--32390220	6	5.0	6	100	0	60	66	33	0	0	0.92
32391312--32391409	3	32.7	3	79	4	99	31	7	1	60	1.31
32391563--32391600	18	2.1	18	85	9	51	26	2	0	71	1.00
32403709--32404737	143	7.2	143	88	0	1400	29	19	22	28	1.98
32404173--32404732	45	12.0	44	67	14	180	29	20	23	27	1.98
32403743--32404732	44	20.9	48	66	20	256	29	19	22	28	1.98
32405137--32405174	20	1.9	20	89	10	60	57	34	0	7	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32406209--32406333	3	43.3	3	75	9	100	32	5	1	60	1.30
32406209--32406330	28	4.3	30	72	16	100	32	5	1	59	1.30
32406209--32406326	17	7.1	16	72	11	87	32	5	1	60	1.31
32406394--32406434	17	2.4	17	95	4	73	19	0	14	65	1.26
32412837--32412868	12	2.7	12	100	0	64	31	28	34	6	1.82
32420003--32420055	24	2.3	23	84	12	74	16	11	30	41	1.84
32420010--32420056	24	2.0	24	95	0	85	19	8	29	42	1.80
32420871--32420905	18	1.9	18	94	0	61	42	45	2	8	1.49
32420931--32420965	6	5.5	6	87	12	52	80	2	0	17	0.84
32420934--32420960	14	1.9	14	100	0	54	74	3	0	22	0.98
32420908--32420966	21	2.6	22	82	15	68	72	3	0	23	0.99
32420985--32421034	9	5.6	9	87	0	73	26	8	20	46	1.78
32421912--32421965	18	3.0	18	75	8	56	50	3	3	42	1.38
32421865--32421961	23	4.1	22	69	18	63	51	6	2	40	1.39
32426024--32426196	40	4.3	40	79	9	174	32	24	13	30	1.93
32425982--32426196	80	2.7	80	82	5	227	33	23	13	29	1.93
32431712--32431753	19	2.2	19	100	0	84	38	14	21	26	1.91
32435396--32435438	21	2.0	21	100	0	86	32	9	18	39	1.83
32439340--32439375	13	2.8	13	91	0	54	38	11	27	22	1.88
32439320--32439396	26	3.0	26	73	7	75	33	9	23	33	1.86
32441432--32441671	72	3.3	72	87	2	349	53	15	7	24	1.66
32442098--32442145	18	2.7	18	93	0	78	39	14	10	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32444895--32444998	52	2.0	52	84	7	138	13	28	8	49	1.72
32448029--32448083	15	3.7	15	92	0	83	30	16	10	41	1.83
32449940--32450048	25	4.6	25	70	16	88	55	3	8	33	1.47
32449882--32450037	70	2.2	69	80	9	167	51	4	10	33	1.56
32449961--32450047	45	2.0	44	84	8	115	55	3	8	33	1.46
32450852--32450924	37	2.0	37	86	0	101	46	28	2	21	1.65
32451556--32451670	30	3.9	29	85	3	124	41	6	21	30	1.77
32451525--32451670	60	2.5	61	78	7	140	43	5	19	30	1.74
32451852--32452325	78	6.0	78	80	4	472	34	18	17	29	1.94
32451897--32452323	155	2.7	155	80	4	491	33	19	16	30	1.94
32460735--32460759	4	6.2	4	100	0	50	52	0	24	24	1.48
32460739--32460793	22	2.5	22	87	3	74	47	3	21	27	1.68
32464697--32464761	25	2.6	25	85	2	85	55	4	7	32	1.49
32464639--32464794	70	2.2	69	79	11	167	51	4	9	33	1.55
32465572--32465649	37	2.1	37	85	0	102	43	35	2	17	1.63
32465611--32465689	40	1.9	41	87	5	115	44	32	0	22	1.53
32466255--32466395	30	4.7	30	76	9	103	40	4	21	32	1.75
32467029--32467101	32	2.5	27	76	19	83	26	4	19	50	1.65
32467042--32467102	32	1.9	32	93	0	104	27	4	18	49	1.68
32467778--32467846	34	2.0	34	100	0	138	34	5	24	34	1.80
32468556--32468586	14	2.2	14	94	0	53	38	22	6	32	1.80
32469080--32469134	11	4.6	12	72	17	51	60	0	1	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32469086--32469137	25	2.1	25	92	0	86	57	0	1	40	1.10
32470203--32470265	30	2.1	30	96	0	117	57	12	3	26	1.51
32470662--32470812	9	16.8	9	67	17	57	61	2	2	33	1.24
32470713--32470812	30	3.5	29	75	10	82	62	3	3	32	1.26
32470783--32470822	18	2.2	18	86	0	53	75	2	2	20	1.04
32470908--32470963	23	2.4	23	79	8	60	30	0	0	69	0.89
32474122--32474195	28	2.7	27	73	10	69	41	0	1	56	1.07
32474111--32474196	28	3.0	27	67	14	66	41	0	1	56	1.06
32480663--32480743	25	3.2	25	74	10	76	35	16	27	20	1.94
32480655--32480755	50	2.0	50	84	3	132	38	14	25	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290