genome.fa.s7.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  138  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43609345--43609392	14	3.5	14	77	5	53	35	0	2	62	1.07
43610073--43610159	7	12.0	7	69	10	50	39	41	0	19	1.52
43610066--43610130	23	2.9	22	81	6	78	41	40	0	18	1.51
43610118--43610163	22	2.1	22	88	4	67	43	36	0	19	1.51
43610600--43610829	41	5.6	41	87	1	327	27	26	20	24	1.99
43610600--43610829	81	2.8	82	87	3	338	27	26	20	24	1.99
43610815--43610935	41	2.9	43	75	10	126	20	20	21	37	1.95
43617284--43617328	20	2.1	21	88	8	65	26	2	15	55	1.52
43617298--43617340	22	1.9	23	85	4	61	23	4	20	51	1.66
43635064--43635110	24	2.0	24	91	0	76	25	2	23	48	1.62
43635342--43635379	20	1.9	20	94	0	67	65	2	0	31	1.06
43639130--43639230	28	3.4	28	71	17	96	34	16	20	27	1.95
43639118--43639236	61	2.0	61	93	0	202	37	16	19	26	1.93
43639129--43639320	61	3.3	57	83	5	188	34	16	21	26	1.95
43643829--43644091	40	6.6	40	87	3	316	26	28	20	24	1.99
43647582--43647606	11	2.3	11	100	0	50	60	8	0	32	1.26
43647600--43647670	25	2.9	25	89	6	101	63	1	12	22	1.37
43655021--43655114	6	15.3	6	72	16	77	48	14	15	20	1.80
43655035--43655114	31	2.6	31	95	0	142	48	15	16	20	1.81
43655246--43655347	27	3.8	26	83	5	114	37	20	22	19	1.95
43655506--43655569	22	2.9	22	79	9	76	34	23	21	20	1.97
43655997--43656459	27	17.3	27	87	1	626	23	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43656444--43656784	27	12.6	27	78	4	258	32	8	20	38	1.83
43656555--43656784	54	4.3	54	89	2	336	32	8	18	40	1.81
43656577--43656784	27	7.7	27	87	0	281	32	7	20	39	1.81
43658979--43659150	93	1.8	93	92	2	292	29	29	20	21	1.98
43658972--43659147	46	3.8	46	77	14	191	30	28	19	21	1.98
43659023--43659166	46	3.1	44	75	15	132	29	28	19	22	1.98
43662988--43663277	40	7.3	40	81	6	286	23	20	27	28	1.99
43662991--43663277	119	2.4	119	84	4	364	22	20	28	28	1.99
43662988--43663277	159	1.8	159	86	3	422	23	20	27	28	1.99
43671406--43671694	40	7.3	40	82	5	302	23	20	27	28	1.99
43671409--43671694	80	3.6	80	82	5	339	23	20	27	27	1.99
43671405--43671694	120	2.4	117	86	2	384	24	20	27	27	1.99
43679516--43679562	5	9.4	5	81	9	60	78	2	0	19	0.85
43686722--43686757	18	2.0	18	89	10	56	11	22	38	27	1.88
43689322--43689369	5	9.4	5	78	13	53	77	2	2	18	0.97
43689313--43689369	17	3.2	18	78	16	57	75	3	1	19	1.04
43689316--43689371	21	2.5	22	86	11	71	75	3	1	19	1.05
43692633--43692882	41	6.1	41	85	2	333	36	21	21	20	1.95
43693044--43693138	7	13.0	7	69	8	55	27	0	27	45	1.54
43693044--43693138	14	6.5	14	71	9	73	27	0	27	45	1.54
43693050--43693131	21	3.7	21	76	12	92	26	0	28	45	1.54
43693053--43693144	46	2.0	46	97	0	175	29	0	26	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43694763--43694839	25	3.1	25	98	0	145	11	18	7	62	1.52
43698292--43698338	19	2.5	19	76	10	51	21	2	4	72	1.12
43698261--43698340	6	13.0	6	70	10	54	23	3	2	70	1.16
43698601--43698793	43	4.5	43	88	0	260	21	20	32	26	1.97
43701978--43702246	46	5.8	46	73	10	215	30	27	20	21	1.98
43701985--43702250	93	2.9	93	88	2	408	29	28	20	22	1.98
43702039--43702194	47	3.3	47	75	15	187	29	30	19	21	1.97
43704665--43704733	30	2.3	30	85	7	97	59	14	14	11	1.61
43704665--43704733	15	4.7	15	73	8	61	59	14	14	11	1.61
43707610--43707878	46	5.8	46	75	11	253	30	29	19	20	1.97
43707664--43707832	47	3.6	47	74	10	175	31	30	18	20	1.96
43707617--43707882	93	2.9	93	92	3	437	30	29	19	20	1.97
43709705--43710087	203	1.9	203	87	2	563	34	17	16	30	1.93
43713227--43713398	93	1.8	93	96	0	317	27	29	21	20	1.98
43713220--43713395	46	3.8	46	79	12	216	28	29	21	20	1.98
43720178--43720306	46	2.8	46	94	2	206	30	29	20	19	1.97
43720186--43720325	46	3.0	45	87	6	133	29	29	20	20	1.98
43730293--43730327	4	9.0	4	93	6	63	51	0	0	48	1.00
43731978--43732003	10	2.6	10	100	0	52	23	7	0	69	1.14
43732469--43732546	38	2.1	38	92	0	129	43	8	15	32	1.78
43734986--43735156	46	3.7	45	79	7	157	24	27	19	28	1.98
43740964--43741022	6	10.0	6	87	3	84	79	1	3	15	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43740944--43741022	17	4.4	17	80	15	88	77	1	3	17	0.99
43740944--43741035	23	3.9	23	83	7	96	76	1	5	17	1.04
43746358--43746390	13	2.6	13	90	4	50	48	12	0	39	1.40
43752298--43752426	49	2.6	50	83	8	156	24	31	19	24	1.98
43752296--43752567	46	5.7	48	76	13	210	25	30	18	26	1.97
43752341--43752615	94	2.9	93	78	10	276	25	31	17	25	1.97
43763233--43763321	30	3.0	30	79	11	94	56	15	17	10	1.67
43763233--43763315	15	5.6	14	73	10	58	55	16	18	9	1.68
43763244--43763321	15	5.2	15	75	9	70	55	15	17	11	1.69
43773615--43773738	46	2.7	46	83	8	137	30	29	19	20	1.97
43782038--43782190	43	3.6	43	77	11	170	25	19	24	30	1.98
43785910--43786008	28	3.6	28	86	2	146	24	16	30	29	1.96
43790994--43791045	24	2.2	24	100	0	104	7	34	11	46	1.69
43795314--43795354	7	5.9	7	86	11	57	68	29	0	2	1.03
43795315--43795354	21	1.9	21	94	0	71	67	30	0	2	1.04
43796223--43796270	24	2.0	24	88	8	71	45	0	6	47	1.27
43796566--43796590	6	4.2	6	100	0	50	32	0	0	68	0.90
43798903--43799168	46	5.8	46	81	2	266	29	21	18	30	1.97
43798903--43799144	91	2.6	93	83	5	269	27	20	19	32	1.97
43800562--43800929	48	7.7	48	82	0	432	24	18	30	26	1.98
43802936--43802973	20	1.9	20	88	0	58	15	42	26	15	1.87
43803345--43803390	23	2.0	23	84	12	60	45	10	6	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43803352--43803396	23	2.0	23	82	8	56	40	13	8	37	1.76
43812628--43812688	21	2.9	21	95	0	104	34	19	13	32	1.90
43813250--43813358	43	2.5	43	85	5	141	31	26	15	26	1.96
43813602--43813642	19	2.2	18	91	4	64	73	4	0	21	1.02
43816980--43817012	17	1.9	17	100	0	66	48	12	9	30	1.71
43818502--43818528	14	1.9	14	100	0	54	33	29	22	14	1.94
43820360--43820386	10	2.7	10	100	0	54	22	0	55	22	1.44
43821265--43821346	41	2.0	41	80	9	94	41	10	2	45	1.53
43821418--43821546	7	18.1	7	69	10	66	37	39	0	23	1.55
43821556--43821651	46	2.1	47	90	5	151	42	26	2	29	1.66
43821834--43821952	41	3.0	40	85	3	141	19	24	21	34	1.96
43825189--43825433	80	3.1	79	87	8	333	24	27	24	23	2.00
43825211--43825433	40	5.6	39	90	6	301	24	28	24	22	2.00
43832469--43832677	41	5.2	40	84	3	125	25	27	23	23	2.00
43832492--43832677	41	4.6	41	87	3	243	24	26	24	24	2.00
43832522--43832675	81	1.9	82	89	4	240	25	25	24	24	2.00
43844290--43844324	12	2.9	12	100	0	70	25	8	17	48	1.75
43855596--43855695	51	2.0	51	83	0	128	23	16	29	32	1.95
43857374--43857481	43	2.5	42	89	3	153	30	26	12	29	1.93
43858683--43858709	14	1.9	14	100	0	54	44	22	0	33	1.53
43860927--43861104	27	6.6	27	74	6	119	28	16	26	29	1.97
43860924--43861104	82	2.2	81	81	4	204	28	16	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43868934--43869111	27	6.6	27	74	6	119	28	16	26	29	1.97
43868931--43869111	82	2.2	81	81	4	204	28	16	25	29	1.97
43878628--43878691	32	2.0	32	100	0	128	68	3	18	9	1.30
43887272--43887426	85	1.8	84	84	6	215	29	25	15	29	1.96
43887272--43887426	42	3.7	42	85	1	202	29	25	15	29	1.96
43901160--43901206	24	2.0	24	91	8	78	14	23	10	51	1.74
43901175--43901279	41	2.6	40	89	3	156	20	23	8	47	1.77
43903775--43903836	31	2.1	29	81	6	70	33	12	19	33	1.90
43916736--43916953	40	5.5	40	87	4	284	26	28	22	22	1.99
43926051--43926102	27	2.0	26	84	3	68	17	26	21	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290