genome.fa.s7.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  154  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49339123--49340635	284	5.3	283	79	5	1485	37	9	14	38	1.79
49340451--49340808	195	1.8	195	89	1	556	34	12	16	36	1.86
49340671--49341365	281	2.5	282	84	4	884	37	10	14	37	1.81
49340668--49341575	141	6.4	141	74	8	613	36	9	14	38	1.80
49347360--49349197	142	13.0	141	78	7	1572	36	9	14	39	1.79
49350415--49350458	20	2.2	20	91	0	70	15	15	18	50	1.79
49351906--49352167	40	6.6	40	93	1	420	25	26	22	25	2.00
49365146--49365370	40	5.7	40	86	4	287	24	21	27	26	1.99
49373053--49374435	143	9.8	141	76	7	1133	37	9	13	39	1.78
49372743--49374435	557	3.0	560	77	8	1471	37	9	14	39	1.78
49372743--49374435	143	12.0	139	74	9	1045	37	9	14	39	1.78
49378907--49378955	25	2.0	25	83	0	62	61	4	8	26	1.42
49378935--49379007	6	12.2	6	76	11	53	76	1	4	17	1.01
49378946--49379007	20	3.4	19	78	19	78	79	0	4	16	0.90
49378935--49379009	5	14.8	5	75	19	59	76	1	4	18	1.02
49379176--49379208	17	1.9	17	88	11	50	57	0	36	6	1.23
49381264--49381357	6	15.3	6	66	16	50	50	13	15	20	1.78
49381279--49381357	37	2.1	37	90	0	122	50	13	16	18	1.78
49381476--49381594	27	4.5	26	84	5	148	38	21	23	15	1.92
49381476--49381597	54	2.3	54	90	4	185	38	21	22	17	1.93
49402473--49402536	32	2.0	32	100	0	128	25	15	25	34	1.95
49404548--49404584	18	2.1	18	90	10	58	70	5	0	24	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49404875--49404911	19	1.9	19	94	0	65	32	18	10	37	1.86
49404878--49404919	19	2.3	19	84	8	52	35	14	14	35	1.86
49405385--49405692	78	4.0	78	84	6	380	25	23	18	32	1.97
49415775--49415811	18	2.1	18	90	10	58	70	5	0	24	1.08
49416102--49416138	19	1.9	19	94	0	65	29	18	10	40	1.85
49416105--49416146	19	2.3	19	84	8	52	33	14	14	38	1.86
49420148--49420402	40	6.5	40	90	4	360	23	23	28	25	2.00
49428310--49428563	40	6.5	40	89	5	360	22	23	28	25	1.99
49428310--49428563	79	3.2	80	89	5	360	22	23	28	25	1.99
49577456--49577635	39	4.6	39	77	12	149	26	26	22	25	2.00
49577456--49577635	77	2.3	80	81	8	203	26	26	22	25	2.00
49585352--49585535	39	4.7	40	83	8	207	25	27	22	24	2.00
49585333--49585535	40	5.1	40	81	9	229	25	27	22	25	2.00
49589852--49589977	43	3.0	43	83	1	155	28	15	23	31	1.96
49596719--49596865	43	3.4	43	83	3	172	28	14	25	31	1.94
49602295--49602365	34	2.1	33	84	2	88	30	22	16	29	1.96
49604704--49604859	78	2.0	78	94	0	276	43	11	12	32	1.79
49605263--49605327	32	2.0	33	85	5	89	40	27	18	13	1.89
49605530--49605612	32	2.6	32	80	0	103	33	18	19	28	1.95
49606111--49606225	27	4.3	27	80	12	112	31	12	14	41	1.83
49606111--49606226	54	2.1	54	84	3	153	31	12	14	41	1.83
49606127--49606227	27	3.7	27	80	5	114	32	10	14	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49625504--49625529	10	2.6	10	100	0	52	92	0	0	7	0.39
49626345--49626377	13	2.5	13	90	0	57	30	30	30	9	1.88
49631212--49631434	119	1.9	120	84	6	301	25	27	22	24	2.00
49631210--49631434	40	5.7	40	85	6	287	25	28	22	24	2.00
49639544--49639621	29	2.7	28	80	11	95	25	15	30	28	1.96
49639574--49639900	173	1.9	174	92	0	557	30	14	23	31	1.94
49646956--49647033	29	2.7	28	84	11	104	25	15	32	26	1.95
49646986--49647312	173	1.9	174	92	0	557	30	14	23	31	1.94
49649170--49649393	40	5.7	40	83	6	260	25	28	21	24	1.99
49649170--49649393	79	2.8	79	83	6	274	25	28	21	24	1.99
49649170--49649393	39	5.6	39	84	4	245	25	28	21	24	1.99
49656113--49656269	54	2.9	54	75	1	163	22	28	14	33	1.94
49662131--49662169	20	1.9	21	89	5	62	25	51	5	17	1.66
49662726--49662836	58	1.9	58	85	1	152	27	29	15	27	1.96
49662758--49662836	29	2.7	29	84	0	104	26	26	17	29	1.98
49663051--49663096	8	5.8	8	86	0	56	19	21	17	41	1.90
49667281--49667388	29	3.8	29	79	4	103	26	28	17	26	1.98
49672646--49672812	42	4.0	42	84	3	210	23	17	26	32	1.97
49672883--49672946	32	2.0	32	93	0	110	37	12	25	25	1.91
49674491--49674588	24	4.0	24	83	1	115	37	5	34	22	1.76
49682413--49682499	12	7.2	12	67	10	52	37	2	36	22	1.67
49682416--49682513	24	4.0	24	87	1	133	38	4	36	20	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49688458--49688578	47	2.6	47	97	0	233	24	19	27	28	1.99
49690724--49690944	46	4.8	46	84	7	304	28	27	21	22	1.99
49690724--49690949	93	2.4	95	89	6	340	28	27	21	22	1.99
49690775--49690964	46	4.1	46	72	18	146	30	26	20	23	1.98
49691448--49691472	12	2.1	12	100	0	50	32	8	0	60	1.26
49692915--49692983	30	2.3	30	85	2	95	56	17	17	8	1.65
49692926--49692988	15	4.2	15	74	8	65	55	15	17	11	1.68
49695969--49696103	45	3.0	44	71	25	104	30	28	19	22	1.98
49700376--49700636	40	6.6	40	87	2	366	23	20	24	31	1.98
49700376--49700636	79	3.3	80	88	2	366	23	20	24	31	1.98
49700376--49700636	119	2.2	119	89	2	389	23	20	24	31	1.98
49702322--49702387	31	2.2	31	94	2	116	31	7	21	39	1.81
49707753--49707794	16	2.6	16	92	0	66	45	23	23	7	1.78
49708179--49708239	28	2.3	26	80	8	68	19	21	22	36	1.95
49709365--49709486	62	2.0	62	98	0	235	25	23	27	22	2.00
49718092--49718165	20	3.7	21	72	16	59	14	29	17	37	1.90
49721351--49721622	46	5.8	47	73	11	202	23	29	19	27	1.98
49727175--49727359	79	2.3	81	84	9	238	25	27	22	24	2.00
49727175--49727359	40	4.6	41	84	9	240	25	27	22	24	2.00
49735193--49735377	79	2.3	81	83	10	231	25	27	21	25	2.00
49735193--49735377	40	4.6	42	77	11	201	25	27	21	25	2.00
49741779--49741864	44	2.0	43	83	2	109	26	16	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49743618--49743731	24	4.9	23	77	9	133	33	16	21	28	1.95
49743618--49743731	46	2.5	46	81	8	124	33	16	21	28	1.95
49743657--49743731	23	3.3	22	75	5	60	33	20	18	28	1.96
49743608--49743739	24	5.7	23	72	15	94	32	17	20	29	1.95
49747469--49747660	40	4.8	41	90	2	257	21	21	30	25	1.99
49750518--49750605	46	1.9	46	90	0	131	27	29	22	20	1.99
49755233--49755666	50	8.6	50	74	6	293	31	25	17	25	1.97
49755227--49755666	154	2.9	151	83	3	551	31	25	17	25	1.97
49756882--49756948	22	3.0	22	97	0	125	34	31	10	23	1.89
49760055--49760090	6	6.0	6	96	0	63	16	30	33	19	1.94
49760324--49760375	18	2.9	17	72	11	50	15	5	7	71	1.29
49767612--49767849	47	5.1	47	91	1	370	27	31	9	31	1.89
49767964--49768430	46	10.1	47	93	2	768	29	29	9	32	1.88
49767964--49768430	93	5.0	93	94	1	771	29	29	9	32	1.88
49768013--49768430	139	3.0	139	96	2	759	30	28	8	32	1.87
49771163--49771199	18	2.2	18	85	9	51	37	8	16	37	1.78
49777117--49777550	47	9.3	47	94	3	738	32	8	29	29	1.87
49777117--49777550	95	4.7	94	94	4	738	32	8	29	29	1.87
49777117--49777550	142	3.1	142	94	3	749	32	8	29	29	1.87
49779786--49779927	40	3.6	40	95	0	241	23	22	28	25	2.00
49779912--49779943	16	2.0	16	100	0	64	25	31	25	18	1.98
49779832--49780019	96	2.0	96	93	0	322	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49779804--49780063	136	1.9	136	92	1	432	24	21	26	26	2.00
49779928--49780109	80	2.3	80	90	0	283	24	21	27	26	1.99
49779928--49780109	40	4.6	40	86	0	247	24	21	27	26	1.99
49783763--49784209	96	4.7	95	91	2	641	33	8	29	28	1.87
49783766--49784209	47	9.3	47	90	3	683	33	9	29	28	1.88
49792190--49792232	6	7.0	6	86	2	59	76	2	4	16	1.05
49792241--49792293	23	2.3	23	100	0	106	52	3	5	37	1.43
49797036--49797190	42	3.7	42	86	3	204	30	14	25	29	1.95
49800341--49800397	23	2.5	22	88	11	80	35	15	21	28	1.94
49800386--49800457	24	2.8	26	81	6	94	33	16	23	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290