genome.fa.s7.2.7.7.80.10.50.1000.245.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  245  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79549234--79549300	33	2.0	33	100	0	134	35	26	0	37	1.57
79549187--79549347	80	2.0	80	98	0	313	32	27	4	34	1.79
79549267--79549435	47	3.6	47	95	3	311	30	28	7	34	1.84
79552628--79552907	40	7.1	40	90	1	429	25	29	21	23	1.99
79552628--79552903	80	3.5	80	94	1	473	25	28	21	23	1.99
79552961--79553035	38	2.0	38	86	5	107	24	26	18	30	1.98
79555418--79555956	47	11.5	47	84	12	650	30	29	7	33	1.85
79555536--79555729	67	2.8	68	92	4	300	31	28	5	34	1.79
79555624--79555684	30	2.0	30	100	0	122	37	29	0	32	1.58
79555654--79555956	93	3.3	93	95	3	533	30	28	7	33	1.84
79555418--79555956	187	2.9	185	79	16	667	30	29	7	33	1.85
79558361--79558418	24	2.4	24	91	5	91	51	0	32	15	1.44
79564740--79564925	40	4.7	40	87	5	234	26	27	21	24	1.99
79573735--79573783	25	2.0	25	100	0	98	26	4	16	53	1.61
79584028--79584202	46	3.8	46	77	10	194	29	28	20	21	1.98
79584036--79584207	93	1.8	93	91	0	281	28	29	20	21	1.98
79585494--79585584	26	3.5	26	80	3	119	31	28	13	26	1.93
79585516--79585610	27	3.6	27	82	2	138	29	28	14	27	1.95
79585494--79585610	53	2.2	53	98	0	225	31	28	13	26	1.94
79585752--79585841	32	2.8	33	80	9	105	42	25	3	28	1.71
79591461--79591503	19	2.3	19	79	0	50	11	11	18	58	1.63
79591579--79591622	19	2.3	19	92	0	70	11	11	27	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79591525--79591585	3	20.7	3	89	3	97	1	1	31	65	1.12
79592251--79592312	30	2.1	30	93	0	106	27	1	11	59	1.41
79592362--79592408	25	1.9	25	86	4	69	31	2	10	55	1.46
79593938--79593976	16	2.5	15	80	19	53	28	5	5	61	1.39
79593930--79593973	18	2.7	16	86	10	54	29	4	4	61	1.36
79594558--79594621	30	2.1	31	85	2	85	39	1	1	57	1.17
79594925--79594957	8	4.1	8	88	11	50	51	0	0	48	1.00
79595737--79595803	34	1.9	35	84	3	91	32	10	11	44	1.75
79595752--79595791	20	2.0	20	85	0	53	30	10	10	50	1.69
79598113--79598152	19	2.1	19	95	0	71	47	7	45	0	1.31
79605122--79605178	30	1.9	29	89	3	87	21	26	38	14	1.91
79606861--79606938	42	1.9	40	84	10	104	14	43	23	19	1.87
79608191--79608298	26	4.2	26	91	0	171	34	7	22	36	1.82
79610945--79611166	47	4.6	50	76	16	184	23	29	18	27	1.98
79613566--79613626	15	3.8	15	77	18	52	0	26	3	70	1.02
79613592--79613626	3	11.3	3	87	6	52	0	31	0	68	0.90
79614818--79614865	3	16.0	3	100	0	96	66	0	33	0	0.92
79616452--79616481	14	2.1	14	100	0	60	63	6	13	16	1.50
79618327--79618415	30	3.0	30	83	0	97	41	23	11	23	1.86
79618499--79618569	29	2.4	29	83	0	97	36	26	11	25	1.90
79621107--79621140	17	2.0	17	100	0	68	64	5	5	23	1.38
79621187--79621251	31	2.0	31	85	11	87	50	0	4	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79623475--79623754	9	29.6	9	69	15	74	60	5	2	32	1.33
79623575--79623619	20	2.2	20	92	7	74	62	8	0	28	1.25
79623880--79623904	13	1.9	13	100	0	50	12	0	0	88	0.53
79624172--79624398	9	24.6	9	67	19	85	33	1	3	61	1.23
79624172--79624367	10	20.7	10	65	24	61	33	2	4	60	1.27
79624297--79624398	20	5.8	16	73	22	64	32	0	2	64	1.08
79624304--79624374	20	3.8	20	71	19	71	35	0	4	60	1.16
79624343--79624390	17	2.8	17	81	9	53	33	0	0	66	0.92
79627571--79627626	22	2.5	22	91	5	87	33	33	14	17	1.90
79630565--79630645	37	2.2	37	81	0	90	29	13	16	40	1.86
79630586--79630678	37	2.5	36	79	10	98	27	15	11	45	1.81
79634033--79634061	12	2.3	13	94	5	51	17	20	0	62	1.33
79642674--79642751	31	2.5	31	82	4	93	15	21	17	44	1.86
79648742--79648790	21	2.3	21	96	0	89	36	4	16	42	1.67
79648934--79649106	46	3.7	46	76	10	181	23	20	26	30	1.98
79648931--79649101	93	1.8	93	89	0	270	22	20	27	29	1.99
79649331--79649368	19	2.0	20	85	15	53	36	0	23	39	1.55
79652844--79652905	26	2.4	26	83	5	81	37	4	12	45	1.64
79654650--79654869	79	2.8	80	88	4	329	27	28	20	24	1.99
79654650--79654869	40	5.5	40	87	4	311	27	28	20	24	1.99
79656396--79656423	13	2.2	13	100	0	56	57	14	0	28	1.38
79663034--79663214	40	4.5	40	87	4	258	27	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79664740--79664767	13	2.2	13	100	0	56	57	14	0	28	1.38
79668372--79668464	46	2.0	46	97	0	177	27	21	16	34	1.95
79672509--79672625	43	2.8	42	81	2	144	31	14	22	31	1.94
79672499--79672627	42	3.0	42	79	2	150	31	13	23	31	1.94
79673306--79673339	15	2.3	15	89	0	50	11	2	41	44	1.56
79679598--79679705	26	4.2	26	93	0	189	32	7	24	36	1.83
79681299--79681441	53	2.7	54	92	4	236	17	24	24	33	1.96
79681302--79681441	27	5.2	27	83	8	180	17	24	24	33	1.96
79682857--79682967	42	2.6	42	76	8	118	29	15	25	29	1.96
79683679--79683712	15	2.3	15	94	0	59	8	5	41	44	1.60
79689172--79689322	78	1.9	78	80	7	173	34	0	34	30	1.63
79693190--79693300	55	2.0	55	100	0	222	31	21	18	28	1.97
79693539--79693981	233	1.9	232	80	8	515	39	15	11	33	1.83
79695235--79695572	94	3.6	93	79	7	362	34	15	24	25	1.95
79700419--79700721	80	3.8	80	83	3	351	31	14	12	41	1.83
79707292--79707354	30	2.1	30	81	0	72	63	11	1	23	1.36
79707384--79707429	22	2.1	22	83	0	56	58	13	8	19	1.60
79724527--79724603	34	2.2	34	81	6	84	33	7	11	46	1.69
79727903--79727956	20	2.6	21	82	11	67	35	0	7	57	1.27
79727946--79727973	11	2.5	11	100	0	56	28	0	0	71	0.86
79729926--79730106	46	4.0	46	89	2	249	39	15	23	21	1.91
79737648--79737701	15	3.8	14	73	26	51	0	16	3	79	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79739664--79739705	22	1.9	22	95	0	75	21	21	16	40	1.91
79739894--79739960	27	2.5	27	90	2	100	35	17	7	38	1.78
79743982--79744042	30	2.1	29	93	3	104	36	21	16	26	1.94
79750453--79750501	21	2.4	20	80	12	55	53	8	0	38	1.31
79752108--79752455	40	8.6	40	83	9	429	25	28	22	23	1.99
79752134--79752451	83	3.9	83	90	2	516	25	29	22	22	1.99
79752108--79752455	163	2.1	163	95	0	626	25	28	22	23	1.99
79757025--79757313	40	7.3	39	91	2	339	23	20	27	28	1.99
79757024--79757313	118	2.4	120	83	5	356	23	20	27	28	1.99
79757024--79757313	80	3.7	79	87	4	379	23	20	27	28	1.99
79764933--79765043	56	2.1	53	88	11	167	44	9	24	22	1.81
79766421--79766577	47	3.3	47	90	4	226	34	9	29	26	1.88
79766418--79766577	48	3.4	48	87	4	227	33	9	30	26	1.88
79769087--79769206	56	2.1	56	98	0	231	45	9	23	22	1.81
79770414--79770757	47	7.6	48	86	11	478	33	9	29	26	1.88
79770414--79770736	91	3.6	92	87	10	472	33	10	30	26	1.89
79773294--79773646	40	9.1	40	90	4	526	25	22	27	25	2.00
79773294--79773641	153	2.2	157	88	5	528	25	22	27	25	2.00
79776202--79776593	47	8.3	47	90	3	576	32	9	30	27	1.89
79779084--79779314	40	5.8	40	93	1	315	24	20	27	27	1.99
79785576--79786086	40	12.6	40	83	9	642	25	29	22	22	1.99
79785576--79786086	123	4.2	120	83	8	642	25	29	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79785576--79786086	163	3.1	163	97	0	952	25	29	22	22	1.99
79789339--79789375	17	2.2	17	100	0	74	40	5	18	35	1.74
79790740--79790843	31	3.4	31	70	10	95	42	3	3	50	1.39
79798962--79799091	39	3.3	39	96	0	233	25	30	23	20	1.98
79798962--79799152	39	4.9	39	87	5	201	26	30	23	19	1.98
79798962--79799131	78	2.2	77	86	4	225	26	30	22	20	1.98
79805366--79805536	39	4.4	39	87	1	218	25	30	23	19	1.98
79805431--79805556	39	3.2	39	85	4	139	26	30	22	19	1.98
79805366--79805556	78	2.4	78	81	6	183	26	30	23	19	1.98
79807947--79807990	23	2.0	22	86	4	61	61	4	0	34	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290