genome.fa.s7.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  156  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50208396--50208433	18	2.1	18	90	0	58	10	2	39	47	1.52
50210718--50210759	22	1.9	22	95	0	75	35	4	16	42	1.69
50216524--50216884	47	7.6	47	89	4	508	33	8	28	29	1.86
50216524--50216884	49	7.6	49	90	4	546	33	8	28	29	1.86
50216524--50216884	96	3.8	94	91	3	544	33	8	28	29	1.86
50220335--50220476	50	2.8	50	83	0	158	26	16	26	30	1.97
50241647--50241696	15	3.6	14	81	8	57	78	4	2	16	1.00
50241647--50241696	14	3.6	13	81	10	55	78	4	2	16	1.00
50243110--50243343	55	4.4	53	77	10	230	36	17	24	21	1.94
50243117--50243317	108	1.8	110	87	4	300	35	16	25	22	1.95
50250714--50250970	55	4.8	55	78	10	252	36	17	24	21	1.94
50251160--50251190	16	1.9	16	93	0	53	41	0	22	35	1.54
50264151--50264231	28	3.0	27	92	3	135	29	17	17	35	1.93
50270201--50270280	27	3.0	27	90	0	124	31	16	16	36	1.91
50272532--50272696	43	3.9	43	72	12	135	23	16	24	35	1.95
50282451--50282703	68	3.8	65	76	8	210	30	16	28	24	1.97
50283626--50283788	82	2.0	82	100	0	326	33	9	9	46	1.70
50287689--50287773	41	2.1	41	100	0	170	42	11	18	27	1.85
50289113--50289230	47	2.5	47	88	0	173	38	13	21	26	1.90
50289215--50289392	55	3.3	54	82	6	227	34	17	24	23	1.96
50289209--50289402	54	3.6	53	81	6	228	35	17	24	23	1.95
50295930--50296103	55	3.2	54	76	8	174	35	16	24	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50300974--50301047	29	2.6	29	86	4	96	27	16	31	25	1.96
50307196--50307324	46	2.8	46	90	0	195	30	26	21	21	1.99
50309711--50309799	30	3.0	30	83	1	108	58	15	15	10	1.63
50309711--50309790	15	5.4	15	77	7	83	60	13	16	10	1.59
50309722--50309799	15	5.2	15	76	6	86	57	15	15	11	1.65
50312555--50312725	93	1.8	93	94	0	306	28	29	21	21	1.98
50312547--50312722	46	3.8	46	79	12	216	28	28	20	21	1.98
50314854--50314994	40	3.5	40	89	5	205	29	29	17	24	1.97
50324729--50324873	41	3.4	42	77	5	148	33	26	15	24	1.95
50324729--50324887	45	3.7	44	77	6	164	32	26	15	25	1.96
50324811--50324896	45	1.9	45	80	4	102	32	24	17	25	1.97
50332019--50332058	19	2.1	19	100	0	80	42	0	22	35	1.54
50337012--50337189	89	2.0	89	95	0	320	34	6	21	37	1.78
50345358--50345423	15	4.3	15	82	7	80	34	13	7	43	1.73
50345358--50345423	30	2.2	31	88	2	98	34	13	7	43	1.73
50347976--50348229	39	6.6	39	90	5	383	22	28	22	26	1.99
50347976--50348229	77	3.3	79	90	5	394	22	28	22	26	1.99
50356081--50356300	40	5.6	40	89	2	313	22	27	22	27	1.99
50359896--50359950	28	2.0	28	82	13	69	47	0	5	47	1.25
50359971--50360009	19	2.0	20	80	14	55	71	7	10	10	1.30
50360261--50360324	28	2.3	28	100	0	128	39	3	20	37	1.68
50360923--50361025	37	2.7	38	75	6	100	30	16	21	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50360923--50361057	40	3.4	40	74	7	132	28	17	21	32	1.96
50367744--50367802	25	2.3	26	82	5	66	54	3	5	37	1.39
50369198--50369334	46	3.0	46	89	0	202	26	30	8	35	1.85
50369314--50369549	47	4.9	47	83	6	303	26	30	11	31	1.91
50369308--50369549	98	2.5	94	89	4	342	26	30	11	31	1.91
50381312--50381629	159	2.0	159	98	0	609	26	14	22	36	1.93
50383929--50384085	43	3.7	43	75	10	149	31	23	15	29	1.96
50385471--50385562	45	2.0	45	93	0	157	22	16	26	34	1.95
50388441--50388468	14	2.0	14	100	0	56	28	28	21	21	1.99
50390671--50390846	46	3.8	46	79	12	216	20	21	29	28	1.98
50390668--50390839	93	1.8	93	96	0	317	20	21	29	27	1.98
50394914--50395089	46	3.8	46	79	12	216	20	21	29	28	1.98
50394911--50395082	93	1.8	93	96	0	317	20	21	29	27	1.98
50399137--50399312	46	3.8	46	80	12	225	20	20	29	29	1.98
50399134--50399305	93	1.8	93	97	0	326	20	20	29	28	1.98
50411926--50412081	27	5.8	27	77	7	138	39	19	9	31	1.84
50411916--50412082	81	2.1	80	81	8	187	37	23	9	29	1.86
50411926--50412054	54	2.4	54	86	0	186	37	20	10	31	1.86
50412007--50412095	27	3.3	26	82	6	106	43	16	7	31	1.77
50424832--50424885	28	1.9	28	84	0	72	29	20	22	27	1.98
50425049--50425129	27	3.0	26	78	8	74	35	19	20	23	1.96
50425274--50425330	27	2.1	27	90	0	87	26	19	17	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50425313--50425482	54	3.2	52	77	7	171	30	10	20	38	1.87
50425313--50425503	27	7.2	26	76	8	134	29	10	21	37	1.87
50428962--50429084	42	2.9	43	80	6	115	31	24	16	27	1.96
50430102--50430241	60	2.3	63	79	8	164	29	27	17	26	1.97
50430263--50430302	20	2.0	20	85	9	55	27	25	20	27	1.99
50434165--50434318	60	2.5	63	78	9	160	29	24	18	27	1.98
50443075--50443297	40	5.7	40	86	6	287	25	27	22	24	2.00
50443075--50443297	79	2.8	79	82	9	276	25	27	22	24	2.00
50443077--50443297	118	1.9	118	83	7	288	25	27	22	24	2.00
50453663--50453715	28	1.9	27	88	3	79	24	26	20	28	1.99
50460051--50460218	40	4.2	40	85	5	207	26	27	21	24	1.99
50468197--50468405	39	5.4	39	90	4	309	26	28	21	23	1.99
50470477--50470514	14	2.9	14	84	11	53	21	0	7	71	1.11
50480284--50480936	44	14.8	44	85	2	756	29	13	26	30	1.94
50483154--50483191	14	2.9	14	84	11	53	21	0	7	71	1.11
50484617--50484700	43	2.0	43	85	0	114	30	26	13	29	1.93
50484775--50484948	43	4.0	43	92	0	294	32	25	14	27	1.95
50484542--50484851	158	2.0	158	92	1	514	34	26	11	27	1.91
50488259--50488296	19	2.0	19	100	0	76	42	5	31	21	1.75
50497335--50497394	27	2.3	26	82	2	66	35	20	23	21	1.96
50498179--50498256	27	2.9	27	83	9	97	34	8	16	39	1.80
50498563--50498645	41	2.0	41	100	0	166	43	34	4	16	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50504543--50504604	27	2.3	27	82	0	70	25	19	17	37	1.94
50504590--50504686	27	3.6	27	91	2	142	28	8	21	41	1.82
50507033--50507116	28	3.0	28	96	0	150	17	25	20	36	1.94
50507033--50507152	56	2.2	54	83	3	141	20	22	18	39	1.93
50516355--50516418	30	2.1	30	97	0	119	39	7	18	34	1.80
50519159--50519200	21	2.0	21	90	9	68	38	9	19	33	1.84
50521760--50521796	18	2.1	18	94	0	65	27	8	21	43	1.80
50539082--50539247	42	3.9	42	75	6	140	31	26	13	27	1.94
50541813--50541867	28	2.0	28	96	0	101	32	29	12	25	1.93
50541852--50541985	40	3.3	40	87	0	196	36	28	14	20	1.92
50547573--50547623	16	3.2	16	97	0	93	21	11	13	52	1.72
50550253--50550303	19	3.0	16	76	15	57	66	0	0	33	0.92
50550219--50550366	23	6.7	22	70	16	76	61	0	3	34	1.17
50551412--50551461	16	2.8	17	85	11	57	36	8	0	56	1.29
50552866--50553050	79	2.3	80	80	8	207	25	28	22	23	1.99
50552866--50553050	40	4.7	40	82	7	225	25	28	22	23	1.99
50556488--50556524	18	2.1	18	89	0	56	54	0	24	21	1.45
50559238--50559364	63	2.0	63	100	0	254	43	6	12	37	1.68
50559435--50559468	17	2.0	17	94	0	59	38	2	11	47	1.55
50562857--50562915	28	2.1	28	83	0	73	28	32	11	27	1.92
50562899--50563043	40	3.6	40	89	0	200	37	26	13	22	1.92
50567463--50567725	40	6.6	40	87	3	316	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50571355--50571403	24	2.0	24	100	0	98	32	30	20	16	1.94
50575414--50575641	40	5.7	40	92	0	359	24	27	22	26	2.00
50584739--50585066	48	6.8	48	86	2	390	28	16	28	26	1.97
50590505--50590671	43	3.9	42	79	3	183	25	14	26	32	1.95
50598198--50598300	43	2.4	43	90	1	154	25	14	25	34	1.94
50599868--50599938	18	3.9	18	83	7	81	47	16	15	19	1.82
50600279--50600393	27	4.3	27	91	1	169	39	18	13	29	1.88
50604983--50605103	46	2.7	43	85	7	143	26	20	29	23	1.99
50612548--50612769	46	4.8	46	75	9	193	27	19	29	23	1.98
50613974--50614012	21	1.9	21	89	5	62	12	38	25	23	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290