Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  33  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10727240--10727276
20
1.9
20
88
5
58
51
8
0
40
1.32
10732598--10732622
6
4.2
6
100
0
50
68
16
0
16
1.22
10732692--10732734
17
2.6
16
78
10
50
72
0
0
27
0.85
10732701--10732736
18
2.0
18
89
10
56
75
0
0
25
0.81
10739698--10739724
5
5.4
5
100
0
54
18
0
0
81
0.69
10741397--10741431
18
1.9
18
88
11
54
65
2
0
31
1.07
10741397--10741437
18
2.4
17
84
15
50
65
2
0
31
1.05
10742143--10742193
24
2.1
24
81
0
57
52
1
3
41
1.31
10742274--10742343
31
2.3
31
89
0
113
55
1
2
40
1.23
10743046--10743097
25
2.1
25
82
7
61
36
1
3
57
1.28
10743673--10743705
14
2.4
14
90
10
50
51
6
3
39
1.42
10744563--10744617
21
2.6
21
85
0
83
21
7
40
30
1.81
10751634--10751682
16
3.0
17
75
19
50
59
0
0
40
0.98
10751631--10751680
15
3.2
16
75
5
50
60
0
0
40
0.97
10751929--10751978
20
2.5
20
87
3
66
44
2
0
54
1.11
10755061--10755107
24
2.0
24
83
8
60
53
2
0
44
1.12
10762158--10762190
17
1.9
17
93
0
57
84
6
0
9
0.76
10768320--10768352
17
2.0
17
94
5
59
36
15
0
48
1.45
10772587--10772636
9
5.6
9
82
0
64
22
34
8
36
1.83
10772587--10772637
6
8.5
6
88
0
57
23
33
7
35
1.84
10772857--10772949
30
3.1
30
74
0
96
30
23
19
26
1.98
10773127--10773174
24
2.0
24
100
0
96
41
8
4
45
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10773471--10773495
13
1.9
13
100
0
50
16
24
40
20
1.91
10783618--10783659
21
2.0
20
82
13
50
50
16
2
30
1.58
10786050--10786256
15
13.8
15
81
4
211
29
24
20
25
1.99
10786050--10786256
30
6.9
30
82
2
236
29
24
20
25
1.99
10793509--10793623
43
2.7
43
78
4
126
32
26
16
24
1.96
10795046--10795294
124
2.0
124
95
0
444
33
20
17
28
1.95
10801433--10801547
43
2.7
42
81
4
115
31
26
18
24
1.97
10805142--10805281
22
6.5
22
68
12
83
42
18
21
17
1.89
10805147--10805306
44
3.7
44
77
3
144
42
18
21
16
1.89
10805233--10805298
22
3.0
21
68
16
53
42
21
22
13
1.88
10817362--10817433
35
2.1
35
91
0
117
26
1
26
45
1.62
10817486--10817602
25
4.3
25
68
24
67
37
0
17
44
1.50
10817486--10817552
35
1.9
35
87
3
100
38
0
16
44
1.48
10817515--10817602
26
3.5
25
87
7
124
36
0
19
44
1.51
10817702--10818080
125
3.0
125
87
4
548
38
15
16
28
1.90
10821923--10821957
17
2.1
17
100
0
70
34
22
5
37
1.78
10823076--10823152
26
3.2
26
66
27
78
27
5
6
61
1.42
10824756--10824889
58
2.4
56
81
14
152
44
1
3
50
1.29
10824985--10825072
39
2.2
39
87
4
122
36
23
5
34
1.79
10825054--10825093
16
2.5
17
88
12
66
27
30
7
35
1.84
10829163--10829187
7
3.6
7
100
0
50
60
12
0
28
1.32
10830128--10830238
52
2.1
52
91
5
177
61
3
1
33
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10832680--10832709
7
4.3
7
100
0
60
43
26
0
30
1.55
10839619--10839655
19
2.0
18
89
5
56
56
0
0
43
0.99
10839764--10839813
21
2.4
21
93
0
82
32
36
8
24
1.84
10840209--10840262
16
3.4
16
92
0
90
35
5
29
29
1.80
10840430--10840573
58
2.5
57
80
10
152
52
3
2
40
1.33
10846731--10846760
15
1.9
16
93
6
53
43
0
40
16
1.48
10856349--10856432
41
2.0
41
88
0
123
19
7
17
55
1.64
10857155--10857211
22
2.8
20
78
17
62
15
8
12
63
1.52
10858349--10858431
42
2.0
42
87
0
121
40
24
20
14
1.89
10871063--10871321
131
2.0
131
83
3
333
25
17
20
37
1.94
10883021--10883228
45
4.6
45
73
11
181
33
18
20
27
1.96
10883016--10883320
137
2.2
137
92
1
504
34
18
19
27
1.95
10883363--10883395
16
1.9
18
88
11
52
45
18
30
6
1.73
10883913--10883954
14
3.1
14
82
3
59
2
14
0
83
0.75
10884010--10884034
7
3.6
7
100
0
50
88
0
0
12
0.53
10887330--10887424
45
2.1
45
84
3
120
26
17
28
27
1.98
10892555--10892657
3
33.7
3
75
14
77
62
6
4
26
1.41
10893749--10893775
11
2.5
11
100
0
54
0
0
7
92
0.38
10894277--10894698
44
9.5
44
69
10
173
28
16
22
32
1.96
10894278--10894718
88
5.0
88
80
6
419
28
16
22
32
1.95
10894444--10894722
88
3.2
88
91
0
434
26
15
24
32
1.95
10894692--10895451
132
5.8
132
86
2
1037
26
24
19
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10898503--10898904
35
11.5
35
84
0
439
31
12
25
30
1.93
10898503--10898905
70
5.8
70
87
0
495
31
12
25
30
1.93
10899769--10899811
7
6.1
7
84
10
52
18
0
0
81
0.69
10899766--10899815
10
5.4
9
84
13
57
20
0
0
80
0.72
10899758--10899815
20
2.9
20
87
10
75
18
0
1
79
0.82
10904432--10904504
3
23.7
3
81
10
85
61
2
5
30
1.32
10906690--10906737
12
3.8
12
80
5
51
0
25
0
75
0.81
10906693--10906732
21
2.0
19
90
9
62
0
27
0
72
0.85
10910365--10910400
15
2.5
15
95
4
65
25
11
5
58
1.54
10915834--10915890
20
2.8
20
84
7
69
50
3
0
45
1.18
10916382--10916416
16
2.3
15
90
5
52
40
5
0
54
1.24
10916408--10916462
25
2.4
22
84
9
74
50
1
0
47
1.11
10941122--10941214
18
5.2
18
93
0
159
31
17
24
26
1.97
10941122--10941214
36
2.6
36
98
0
177
31
17
24
26
1.97
10944548--10944590
18
2.6
18
89
10
65
13
6
0
79
0.93
10944545--10944596
21
2.7
21
82
11
67
15
7
0
76
0.99
10945311--10945358
12
3.8
12
76
10
51
27
6
4
62
1.38
10945507--10945548
22
1.9
22
85
0
57
21
7
2
69
1.25
10945581--10945629
18
2.7
18
93
0
80
26
20
0
53
1.46
10951895--10951964
31
2.2
31
87
7
97
28
1
7
62
1.30
10953584--10953647
31
2.0
32
85
8
87
26
15
4
53
1.62
10958938--10959020
25
3.2
25
76
6
94
21
2
7
68
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10958939--10959020
27
3.1
26
77
6
85
21
2
6
69
1.22
10958948--10959039
25
3.6
24
74
14
78
26
4
5
64
1.34
10959128--10959193
28
2.4
27
82
5
69
27
6
3
63
1.32
10959204--10959334
26
5.1
26
78
5
122
28
3
8
59
1.44
10959227--10959327
24
4.0
24
85
10
121
27
2
7
61
1.39
10959227--10959324
51
1.9
50
85
6
133
27
3
8
61
1.39
10962008--10962128
62
2.0
61
95
1
215
37
22
18
22
1.94
10975625--10975986
45
8.0
45
71
8
164
32
16
21
29
1.95
10975717--10975983
89
2.9
94
75
10
253
29
17
22
30
1.97
10975826--10976013
89
2.1
89
82
0
223
30
16
23
29
1.96
10977439--10977468
16
1.9
15
93
6
51
20
0
6
73
1.05
10977540--10977595
25
2.2
25
84
6
69
37
3
1
57
1.27
10977540--10977801
27
10.0
25
71
15
108
31
3
3
61
1.30
10977558--10977842
26
11.0
25
67
17
111
30
3
4
61
1.31
10977733--10977775
14
3.2
14
74
12
54
32
0
2
65
1.06
10977712--10977842
26
5.1
26
81
5
149
30
3
6
60
1.36
10977712--10977842
53
2.6
50
82
4
154
30
3
6
60
1.36
10977627--10977815
99
1.9
101
81
8
235
29
4
3
62
1.31
10979066--10979095
11
2.8
11
95
5
53
10
16
0
73
1.09
10980495--10980528
17
2.0
17
94
0
59
67
0
0
32
0.91
10980781--10980856
22
3.7
21
76
15
68
40
17
6
35
1.75
10980817--10980905
17
4.9
19
89
10
143
37
15
10
37
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10980810--10980894
35
2.4
37
88
11
133
36
16
9
37
1.81
10980817--10980917
54
1.9
54
86
9
147
37
13
10
37
1.80
10981260--10981482
45
4.9
45
77
8
238
26
28
15
30
1.96
10981268--10981482
89
2.4
91
84
6
260
26
28
15
28
1.96
10981422--10981716
78
3.8
78
92
1
502
24
24
19
31
1.98
10981667--10982101
44
9.9
44
76
12
378
25
22
17
34
1.96
10993657--10993691
18
2.0
18
88
5
54
68
0
0
31
0.90
10993960--10994004
22
2.0
22
86
4
63
37
17
6
37
1.76
10993976--10994073
35
2.7
37
87
12
150
35
16
10
37
1.82
10993983--10994073
19
4.9
19
92
8
161
36
15
10
37
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290