genome.fa.s7.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  14  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4890096--4890125	14	2.1	14	93	0	51	16	13	36	33	1.88
4894201--4894258	18	3.4	17	79	9	64	31	1	1	65	1.13
4895904--4896077	46	3.8	46	75	15	187	21	19	29	29	1.98
4895898--4896070	93	1.9	93	93	2	303	21	19	29	28	1.98
4899419--4899451	3	10.7	3	93	6	57	30	3	0	66	1.06
4901130--4901173	23	1.9	23	90	0	70	4	6	4	84	0.88
4909772--4909826	28	1.9	29	82	10	69	34	0	7	58	1.26
4910185--4910263	29	2.8	28	84	9	97	26	1	36	35	1.65
4910677--4910751	26	2.9	27	86	4	109	45	5	4	45	1.45
4910863--4910897	17	2.0	18	88	5	54	34	0	0	65	0.93
4911332--4911365	13	2.6	13	90	0	59	23	38	0	38	1.55
4915004--4915120	9	12.3	9	75	10	108	45	22	0	32	1.53
4915010--4915085	39	1.9	39	97	0	143	46	21	0	32	1.52
4915004--4915120	48	2.4	49	83	5	141	45	22	0	32	1.53
4915006--4915118	57	2.0	57	87	0	163	46	23	0	30	1.53
4920694--4920723	15	1.9	16	93	6	53	36	16	46	0	1.47
4920961--4921040	31	2.5	33	75	8	83	15	6	18	60	1.56
4921118--4921277	43	3.7	42	83	0	194	25	28	15	30	1.96
4921115--4921278	86	1.9	86	92	0	274	24	28	15	31	1.96
4921122--4921299	43	4.1	43	79	6	171	28	27	14	29	1.95
4928342--4928416	38	2.0	39	84	10	102	40	10	4	45	1.58
4930777--4930825	20	2.4	21	73	10	57	59	0	8	32	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4931000--4931027	6	4.7	6	100	0	56	14	14	17	53	1.73
4931191--4931468	18	15.1	18	74	7	182	35	11	15	37	1.84
4932638--4932676	13	3.1	12	82	10	51	25	2	2	69	1.14
4933342--4933404	30	2.1	31	85	8	85	49	3	1	46	1.27
4940076--4940107	14	2.3	14	100	0	64	37	12	18	31	1.88
4948900--4948948	24	2.0	24	84	7	64	18	8	32	40	1.80
4955179--4955214	17	2.1	18	89	5	56	36	0	2	61	1.11
4956827--4956909	33	2.4	35	78	6	98	19	27	16	36	1.93
4960755--4960924	84	2.0	84	87	2	243	44	15	11	27	1.82
4967018--4967129	36	3.2	35	73	7	102	18	25	19	36	1.94
4992827--4992871	22	2.0	23	87	8	67	15	17	6	60	1.56
4993374--4993416	19	2.3	19	80	8	52	30	6	2	60	1.35
4997859--4997922	23	2.7	23	77	15	69	39	3	10	46	1.55
5000393--5000527	39	3.4	39	74	11	116	28	27	20	23	1.99
5011077--5011132	28	2.0	28	100	0	112	42	10	14	32	1.80
5017689--5017720	5	6.4	5	100	0	64	18	21	40	18	1.91
5020363--5020447	42	2.0	42	100	0	170	42	11	14	31	1.81
5026852--5027201	188	1.9	188	84	1	477	40	20	18	21	1.92
5031347--5031391	22	2.0	22	100	0	90	51	13	22	13	1.75
5038297--5038336	21	1.9	21	89	0	62	65	5	5	25	1.34
5040803--5040844	21	2.0	20	90	4	66	11	21	14	52	1.73
5057996--5058032	14	2.7	14	87	4	58	40	13	0	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5060113--5060169	30	2.0	28	86	6	78	68	3	0	28	1.06
5060576--5060620	23	1.9	24	81	4	56	31	11	4	53	1.56
5062902--5062931	3	10.0	3	92	0	51	30	0	3	66	1.07
5062883--5062931	12	4.1	12	82	7	55	24	6	6	63	1.41
5063017--5063080	26	2.5	25	75	12	60	14	9	3	73	1.20
5065479--5065508	3	10.0	3	100	0	60	33	0	0	66	0.92
5065689--5065719	10	3.1	10	95	0	53	32	0	0	67	0.91
5069594--5069651	23	2.5	22	78	13	62	27	5	3	63	1.31
5079515--5079563	25	2.0	25	95	0	89	28	20	22	28	1.98
5081003--5081029	13	2.1	13	100	0	54	55	0	14	29	1.40
5084791--5085039	63	4.0	63	95	0	435	19	22	15	42	1.89
5095745--5095790	17	2.8	18	84	15	64	28	41	30	0	1.56
5097451--5097481	16	1.9	16	93	0	53	35	3	0	61	1.12
5108738--5108773	17	2.1	17	100	0	72	55	11	27	5	1.57
5112379--5112482	52	2.0	52	100	0	208	26	19	13	40	1.88
5114985--5115026	18	2.3	18	88	8	59	59	2	0	38	1.10
5116047--5116107	13	4.8	13	75	13	65	72	6	0	21	1.07
5116332--5116381	25	2.0	25	88	0	73	36	22	12	30	1.90
5116436--5116466	15	2.1	15	93	0	53	45	0	3	51	1.17
5117834--5117966	60	2.2	62	89	4	200	56	11	0	32	1.35
5119933--5119958	4	6.5	4	100	0	52	26	23	0	50	1.50
5121511--5121562	22	2.3	23	81	12	56	57	5	5	30	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5121709--5121814	3	36.7	3	68	14	62	60	2	4	32	1.32
5123198--5123388	44	4.3	44	74	15	187	23	18	20	36	1.95
5124001--5124052	18	2.8	18	80	16	54	57	0	1	40	1.10
5124238--5124298	31	2.0	31	83	6	79	45	14	3	36	1.62
5125143--5125186	22	2.0	22	86	0	61	52	0	0	47	1.00
5125210--5125245	15	2.3	16	85	9	56	61	0	0	38	0.96
5125278--5125333	15	3.5	15	71	19	51	50	0	0	50	1.00
5125280--5125316	19	1.9	19	88	0	56	48	0	0	51	1.00
5129772--5129821	15	3.5	15	78	10	59	48	10	16	26	1.77
5130959--5131006	22	2.2	21	82	14	53	62	6	2	29	1.31
5131844--5131898	7	7.9	7	100	0	110	70	14	0	14	1.16
5135768--5135803	6	5.8	6	93	3	54	2	2	11	83	0.86
5139442--5139475	18	1.9	18	94	5	61	55	0	5	38	1.24
5141777--5141840	31	2.1	29	83	11	76	60	6	3	29	1.36
5151950--5152022	38	1.9	38	83	5	94	27	28	23	20	1.99
5152886--5152910	10	2.5	10	100	0	50	56	0	0	44	0.99
5153297--5153329	15	2.1	16	88	5	50	42	9	0	48	1.35
5154595--5154754	43	3.9	43	82	11	199	32	20	25	21	1.97
5154854--5154919	30	2.2	30	83	8	80	56	19	6	18	1.62
5155155--5155216	21	3.0	21	92	0	106	0	51	20	27	1.48
5155628--5155656	14	2.1	14	93	6	51	58	6	0	34	1.25
5155823--5155861	17	2.4	17	86	4	53	48	0	10	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5160845--5161033	9	20.6	9	73	13	100	37	1	13	48	1.49
5160875--5160999	17	7.2	17	72	10	85	40	1	10	48	1.47
5160821--5160909	43	2.1	43	83	8	110	37	1	12	49	1.48
5160880--5161064	96	2.0	90	86	9	259	38	1	11	48	1.50
5160845--5161037	26	7.0	27	70	15	117	37	1	12	48	1.49
5160915--5161060	48	3.0	49	72	19	144	38	1	12	47	1.50
5160880--5161064	87	2.1	87	84	7	234	38	1	11	48	1.50
5161138--5161193	15	3.8	15	76	21	64	51	0	1	46	1.11
5162634--5162663	14	2.2	13	94	5	51	36	13	0	50	1.42
5164369--5164398	16	1.9	16	93	6	53	43	26	10	20	1.83
5166380--5166414	16	2.2	16	94	0	61	71	5	0	22	1.07
5166434--5166498	28	2.4	28	78	14	73	40	0	1	58	1.07
5166719--5166886	73	2.3	73	78	10	171	37	35	1	25	1.66
5167100--5167165	18	3.8	18	80	8	73	46	27	3	22	1.66
5178364--5178498	42	3.3	42	91	5	213	25	24	20	30	1.98
5178560--5178669	41	2.7	40	77	10	107	28	25	20	26	1.99
5178443--5178821	154	2.5	154	84	2	465	27	24	19	28	1.98
5185723--5185787	20	3.2	21	68	24	66	43	16	15	24	1.87
5185710--5185789	40	2.0	40	97	0	151	45	13	18	22	1.85
5186532--5186582	23	2.3	22	83	12	68	27	1	0	70	0.98
5186506--5186628	61	2.0	61	81	9	144	42	0	0	56	1.04
5191463--5191491	14	2.0	15	93	6	51	37	62	0	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5199211--5199249	19	2.1	19	100	0	78	25	25	10	38	1.87
5200605--5200630	2	13.0	2	100	0	52	50	0	0	50	1.00
5203523--5203556	17	2.0	17	100	0	68	35	17	23	23	1.95
5204352--5204409	30	1.9	30	89	0	89	41	3	24	31	1.71
5204622--5204652	13	2.4	13	94	0	53	32	0	12	54	1.38
5204750--5204960	50	4.2	50	91	0	332	26	23	30	19	1.98
5206856--5206901	23	2.0	23	84	12	60	45	10	6	36	1.65
5206863--5206907	23	2.0	23	82	8	56	40	13	8	37	1.76
5213780--5213936	43	3.7	43	76	10	160	29	28	18	22	1.97
5217401--5217574	92	1.9	92	89	0	267	43	18	9	28	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290