genome.fa.s7.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  173  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56274961--56275128	44	3.8	44	86	6	225	24	22	29	24	1.99
56274966--56275128	45	3.7	45	87	6	228	23	22	29	24	1.99
56279196--56279385	27	7.1	27	86	2	222	28	24	8	38	1.84
56279200--56279385	80	2.3	81	90	0	284	29	23	8	38	1.83
56279389--56279541	54	2.8	53	82	6	168	40	18	11	30	1.85
56279422--56279541	27	4.5	26	85	7	161	42	19	8	30	1.80
56279422--56279560	27	5.2	27	83	7	142	42	18	7	31	1.78
56279446--56279628	54	3.4	53	77	5	143	42	18	7	31	1.78
56279549--56279634	27	3.1	27	80	14	104	39	15	9	36	1.79
56279688--56279779	27	3.4	27	85	8	116	34	19	26	19	1.96
56280578--56280691	27	4.3	26	92	3	183	29	21	23	25	1.99
56280578--56280792	53	4.3	53	77	15	255	28	21	23	26	1.99
56280630--56280758	67	1.9	68	95	1	233	31	20	24	24	1.98
56280698--56280795	25	3.8	26	91	1	146	25	23	24	26	2.00
56280695--56280795	51	2.0	51	90	3	159	25	22	23	27	2.00
56281013--56281091	31	2.5	31	89	0	122	32	17	22	26	1.96
56286175--56286232	30	1.9	30	89	0	89	41	6	22	29	1.80
56291810--56291867	25	2.4	23	82	5	62	24	22	8	44	1.80
56291987--56292194	55	3.8	53	81	6	231	22	25	16	35	1.95
56291987--56292187	108	1.8	110	89	4	318	22	25	17	34	1.95
56299101--56299145	23	1.9	24	86	4	65	22	26	11	40	1.87
56299214--56299468	55	4.8	54	80	7	256	21	25	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56299261--56299461	108	1.8	110	89	2	316	22	25	17	34	1.95
56300740--56300767	11	2.5	11	100	0	56	53	17	0	28	1.44
56301223--56301315	27	3.4	27	88	2	98	31	13	16	38	1.88
56301267--56301635	27	13.7	28	80	8	329	31	8	19	39	1.82
56301267--56301635	81	4.6	81	79	9	371	31	8	19	39	1.82
56305170--56305200	16	1.9	16	93	0	53	32	19	6	41	1.77
56313653--56313776	29	4.3	29	80	1	124	33	25	12	28	1.93
56313989--56314023	16	2.2	16	94	0	61	17	20	11	51	1.75
56317516--56317575	27	2.3	26	85	2	75	35	20	23	21	1.96
56317543--56317683	67	2.0	67	85	5	183	29	21	29	19	1.98
56317614--56317665	27	2.0	26	84	3	68	34	21	26	17	1.95
56318307--56318398	27	3.4	27	89	0	121	27	22	17	32	1.96
56323886--56323919	15	2.3	15	100	0	68	35	17	26	20	1.95
56324154--56324205	27	2.0	26	84	3	68	34	21	26	17	1.95
56324848--56324939	27	3.4	27	87	3	123	27	21	17	33	1.96
56327598--56327801	53	3.8	53	75	3	183	37	18	23	21	1.94
56333123--56333177	27	2.0	27	100	0	110	29	10	25	34	1.90
56334653--56334855	53	3.8	54	76	3	194	38	18	23	19	1.93
56337711--56337781	35	2.0	35	94	0	124	35	14	29	21	1.92
56338735--56338811	39	2.0	39	97	0	145	45	12	9	32	1.74
56340825--56340995	93	1.8	93	89	0	270	30	28	18	22	1.97
56340824--56340991	46	3.6	46	73	16	157	30	27	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56350116--56350181	34	2.0	33	82	8	80	28	21	22	27	1.99
56364374--56364417	20	2.2	21	88	8	65	72	2	4	20	1.13
56372699--56372919	40	5.6	40	87	4	297	22	28	22	27	1.99
56372699--56372919	119	1.9	119	83	5	295	22	28	22	27	1.99
56374139--56374206	34	2.0	34	94	0	118	27	14	16	41	1.87
56381731--56381914	40	4.6	40	85	0	224	25	15	23	34	1.95
56381736--56381911	80	2.2	80	88	0	253	25	15	24	34	1.95
56386247--56386291	22	2.2	20	88	8	63	35	6	17	40	1.76
56386890--56386928	18	2.1	18	85	4	51	25	2	20	51	1.60
56387550--56387761	43	5.0	43	82	5	261	25	12	26	34	1.92
56391677--56391706	14	2.1	14	93	0	51	76	3	3	16	1.05
56393325--56393363	18	2.1	19	90	4	62	41	0	56	2	1.13
56400965--56401023	28	2.1	28	100	0	118	49	10	10	30	1.70
56403833--56403908	35	2.1	36	92	4	127	38	21	15	25	1.92
56407950--56408104	24	6.4	24	88	0	211	26	20	23	29	1.99
56408153--56408208	11	5.5	11	71	16	57	32	19	12	35	1.89
56408153--56408219	20	3.3	20	93	0	116	32	20	11	34	1.90
56416244--56416363	24	5.0	24	89	3	161	25	21	24	28	1.99
56416269--56416364	24	4.0	24	94	0	165	26	20	25	28	1.99
56416413--56416479	20	3.3	20	89	0	107	32	22	11	32	1.90
56416516--56416563	25	1.9	25	86	0	69	27	14	25	33	1.94
56421158--56421336	79	2.2	81	83	7	224	25	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56421139--56421336	40	5.0	40	82	8	226	25	26	22	25	2.00
56426915--56427126	40	5.5	39	90	6	301	22	23	28	25	1.99
56435054--56435271	40	5.5	40	88	2	280	23	22	28	25	1.99
56452435--56452531	30	3.2	30	76	2	97	27	26	16	28	1.97
56453389--56453437	20	2.3	20	82	10	53	32	8	14	44	1.74
56456532--56456651	46	2.6	45	78	7	116	24	25	20	30	1.99
56464728--56464881	42	3.6	43	73	11	136	25	19	23	31	1.98
56464728--56464832	44	2.4	44	83	9	128	24	20	23	30	1.99
56471098--56471137	20	2.0	20	100	0	80	50	20	10	20	1.76
56480010--56480079	28	2.5	28	90	4	106	27	12	27	32	1.93
56486344--56486471	28	4.5	28	84	2	157	29	10	25	33	1.90
56494386--56494483	28	3.5	28	84	1	88	28	12	24	34	1.91
56494412--56494483	28	2.6	28	88	0	108	30	11	22	36	1.89
56510824--56510902	37	2.1	37	90	0	122	25	31	18	24	1.98
56511021--56511496	47	10.1	47	93	0	691	27	30	9	31	1.89
56518664--56518739	40	1.9	40	86	0	107	17	30	18	34	1.94
56521420--56521527	40	2.7	40	77	0	99	38	21	12	26	1.90
56521925--56521972	21	2.3	21	79	10	55	35	18	2	43	1.62
56525431--56525495	31	2.1	31	100	0	130	30	6	27	35	1.81
56528987--56529080	34	2.8	33	87	9	127	24	22	23	29	1.99
56529082--56529132	18	2.8	19	76	8	61	37	13	21	27	1.91
56529385--56529434	23	2.2	23	86	13	68	42	18	14	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56529469--56529584	27	4.3	27	76	2	81	22	19	17	40	1.91
56529576--56529916	27	12.7	27	88	3	447	36	16	16	31	1.91
56537541--56537642	40	2.5	41	84	4	127	30	24	13	31	1.94
56540321--56540382	27	2.3	27	85	0	88	33	20	20	24	1.97
56540585--56540679	25	3.8	25	91	0	145	28	24	21	26	1.99
56540585--56540704	50	2.4	50	83	5	136	29	22	21	26	1.99
56546454--56546517	30	2.2	29	88	2	92	25	15	23	35	1.94
56548449--56548530	29	2.9	29	90	1	121	29	32	13	24	1.93
56552356--56552405	17	2.8	17	78	6	55	64	10	0	26	1.25
56561402--56561577	49	3.5	50	84	8	241	35	15	21	27	1.93
56561402--56561577	50	3.5	50	86	6	241	35	15	21	27	1.93
56561553--56561639	31	2.8	31	87	0	129	27	18	27	26	1.98
56561740--56561912	42	3.9	47	84	12	206	30	15	26	28	1.96
56564671--56564785	29	4.0	29	78	6	110	30	27	13	27	1.95
56565003--56565033	16	1.9	16	93	0	53	19	16	12	51	1.76
56572325--56572439	29	4.0	29	80	2	117	30	27	14	26	1.95
56572664--56572694	16	1.9	16	93	0	53	22	22	12	41	1.88
56588281--56588359	29	2.8	29	86	1	106	17	18	29	34	1.95
56593285--56593416	47	2.8	46	93	3	219	28	15	15	40	1.88
56596820--56596935	45	2.6	44	86	9	155	23	19	27	29	1.98
56602350--56602491	47	3.0	47	89	5	225	28	12	15	43	1.83
56607723--56607805	31	2.7	31	94	3	143	27	25	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56608031--56608094	25	2.6	25	89	0	92	23	25	23	28	2.00
56608297--56608540	27	9.0	27	82	2	265	23	20	19	36	1.95
56608306--56608540	54	4.4	54	86	1	301	23	21	19	35	1.96
56608532--56608591	26	2.3	26	82	5	77	33	11	16	38	1.85
56608544--56608750	27	7.7	27	81	3	130	33	8	21	36	1.84
56608646--56608804	54	2.9	52	82	5	156	40	8	20	31	1.81
56608619--56608818	81	2.5	81	78	0	202	36	7	20	35	1.81
56608674--56608804	27	4.9	27	88	3	183	42	8	19	29	1.80
56616277--56616379	44	2.3	44	91	0	170	33	17	20	29	1.95
56620087--56620200	40	2.8	39	81	11	106	34	25	12	28	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290