Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  124  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38973931--38973974
21
2.1
21
82
0
52
22
34
31
11
1.90
38975720--38975916
35
5.3
37
77
13
190
26
27
20
24
1.99
38984066--38984232
40
4.2
40
82
3
201
29
27
20
22
1.98
38987759--38987784
12
2.2
12
100
0
52
7
15
30
46
1.74
38987839--38988057
41
5.4
41
88
1
289
37
24
20
17
1.93
38988926--38988974
6
7.7
6
84
8
53
73
2
0
24
0.94
38988936--38989052
8
15.4
8
91
4
120
68
0
0
30
0.96
38988931--38989052
16
8.1
16
89
6
143
68
0
0
30
0.95
38988936--38989052
24
5.1
24
90
6
156
68
0
0
30
0.96
38988935--38989062
7
17.1
7
82
9
87
64
0
0
34
0.99
38989142--38989230
20
4.6
20
72
13
87
73
1
4
21
1.08
38989160--38989208
25
2.0
24
84
11
64
75
2
4
18
1.06
38989136--38989247
57
2.0
55
93
6
190
73
1
4
20
1.10
38989140--38989237
29
3.4
29
70
23
98
74
1
4
20
1.04
38993043--38993083
19
2.2
19
86
4
57
21
2
4
70
1.18
39014560--39014665
40
2.6
41
92
2
180
22
22
28
26
1.99
39016982--39017020
17
2.3
17
95
0
69
48
38
7
5
1.54
39023898--39023931
17
1.9
18
94
5
61
64
0
5
29
1.17
39029219--39029257
21
2.0
21
85
10
55
46
20
12
20
1.83
39029228--39029267
21
1.9
21
85
10
55
45
22
15
17
1.85
39030790--39030817
7
4.0
7
100
0
56
28
14
0
57
1.38
39030804--39030867
31
2.1
31
87
0
92
26
23
14
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39031075--39031225
23
6.4
24
89
4
218
26
21
21
29
1.99
39031070--39031225
71
2.2
70
89
3
242
25
22
22
29
1.99
39031075--39031225
47
3.2
48
87
4
218
26
21
21
29
1.99
39031276--39031342
20
3.3
20
89
0
107
32
20
13
32
1.92
39034996--39035027
16
1.9
17
93
6
57
62
0
6
31
1.20
39038064--39038293
40
5.8
40
93
1
347
26
28
22
23
1.99
39038038--39038293
80
3.2
79
90
3
356
25
28
22
23
1.99
39042566--39042600
16
2.2
16
100
0
70
31
17
25
25
1.97
39056424--39056678
55
4.8
54
78
10
260
35
17
25
21
1.95
39056434--39056680
108
2.3
110
81
9
307
34
17
25
22
1.95
39058118--39058374
55
4.8
55
76
10
225
34
18
25
21
1.96
39058564--39058594
16
1.9
16
93
0
53
41
0
19
38
1.51
39059815--39060069
55
4.8
53
80
8
236
35
18
24
21
1.95
39060261--39060291
16
1.9
16
93
0
53
41
0
22
35
1.54
39076448--39076506
30
2.0
30
86
0
82
38
10
25
25
1.87
39076842--39077096
55
4.8
54
78
12
246
34
17
25
22
1.96
39076852--39077049
108
1.8
109
86
6
294
33
17
25
23
1.96
39078762--39078957
40
4.9
40
87
7
290
23
28
23
24
2.00
39078762--39078953
80
2.4
80
94
1
332
23
29
23
23
1.99
39085252--39085291
20
2.0
20
90
0
62
20
30
17
32
1.95
39086121--39086248
25
5.2
24
71
11
80
33
19
19
27
1.96
39086166--39086237
25
2.9
25
82
0
90
41
16
18
23
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39089036--39089443
45
9.1
45
88
2
565
29
27
18
24
1.98
39089123--39089196
25
3.2
25
61
18
59
28
28
18
24
1.98
39099354--39099574
40
5.6
40
86
6
281
22
22
28
27
1.99
39099354--39099574
80
2.8
79
90
2
320
22
22
28
27
1.99
39107542--39107762
40
5.6
40
86
6
281
22
22
28
27
1.99
39107542--39107762
80
2.8
79
89
2
313
22
22
28
27
1.99
39110278--39110358
25
3.2
25
89
0
126
37
17
20
24
1.94
39110232--39110358
25
5.1
25
77
9
118
33
18
21
26
1.97
39110272--39110380
50
2.2
51
80
11
127
36
17
21
24
1.94
39118762--39118841
37
2.2
37
84
4
108
27
30
17
25
1.97
39118960--39119341
47
8.1
47
91
1
577
29
29
8
32
1.88
39118975--39119341
143
2.6
141
90
1
572
28
30
8
31
1.88
39138544--39138619
38
2.0
38
97
0
143
51
7
1
39
1.39
39140463--39140531
20
3.5
20
72
7
77
65
2
14
17
1.39
39140505--39140539
18
1.9
18
88
0
52
80
0
5
14
0.89
39140602--39140646
21
2.1
21
84
8
56
37
0
2
60
1.09
39141963--39142039
30
2.5
30
81
6
84
50
9
1
38
1.42
39149191--39149225
17
2.0
18
88
5
54
65
5
2
25
1.28
39162493--39162685
53
3.9
48
79
13
169
31
30
15
23
1.95
39162549--39162702
52
2.9
52
87
2
193
31
28
16
23
1.96
39165698--39165724
13
2.1
13
100
0
54
25
14
22
37
1.93
39168559--39168666
26
4.2
26
96
0
198
30
5
26
37
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39173318--39173380
15
4.1
15
78
15
74
28
0
4
66
1.12
39179169--39179214
23
2.0
24
82
4
58
4
8
13
73
1.21
39182456--39182543
45
2.0
45
93
4
151
38
22
11
27
1.88
39186075--39186140
25
2.6
25
82
0
78
30
19
21
28
1.98
39192890--39193066
39
4.5
39
93
0
300
46
22
3
28
1.68
39192971--39193037
17
3.7
17
71
19
55
47
23
1
26
1.60
39193099--39193146
22
2.2
22
100
0
96
39
14
20
25
1.91
39201018--39201468
47
9.4
47
90
3
704
33
10
28
27
1.90
39202827--39203052
40
5.7
40
87
5
262
26
26
21
26
1.99
39204686--39204787
47
2.2
47
92
0
168
37
11
25
25
1.90
39204712--39204787
22
3.3
22
66
28
59
35
13
27
23
1.92
39206333--39206816
40
12.1
40
86
0
655
25
20
27
26
1.99
39206978--39207030
25
2.1
25
82
6
63
35
13
30
20
1.91
39210004--39210081
22
3.4
22
67
16
68
37
14
25
23
1.92
39209587--39210129
47
11.6
47
94
0
843
34
11
27
26
1.90
39209556--39210163
47
12.9
47
91
0
829
34
10
28
26
1.90
39210143--39210233
46
2.0
46
88
0
137
35
6
30
27
1.82
39212003--39212051
23
2.1
23
100
0
98
40
34
4
20
1.71
39219525--39219555
10
3.1
10
100
0
62
29
19
29
22
1.98
39220347--39220414
34
2.0
34
85
0
91
48
17
8
25
1.76
39227934--39227966
16
2.1
16
100
0
66
48
27
6
18
1.71
39229402--39229509
29
3.8
29
78
6
103
28
14
32
24
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39232375--39232407
16
2.1
16
94
0
57
48
30
6
15
1.69
39236752--39236776
2
12.5
2
100
0
50
52
0
0
48
1.00
39241761--39242099
51
6.6
51
83
0
390
39
20
10
29
1.86
39241801--39242080
27
10.9
27
66
18
143
39
21
10
28
1.86
39241818--39242062
24
9.7
25
65
18
98
38
22
11
27
1.88
39241761--39242107
153
2.3
153
86
2
473
38
20
10
29
1.86
39245665--39245709
21
2.1
21
95
0
81
33
6
4
55
1.46
39250131--39250172
21
1.9
23
85
9
61
57
14
4
23
1.56
39255625--39255651
14
1.9
14
100
0
54
51
0
7
40
1.30
39265195--39265545
47
7.5
47
93
0
540
31
9
30
28
1.88
39269506--39269619
43
2.7
42
78
5
131
27
16
26
29
1.97
39270869--39270928
10
6.0
10
75
14
61
66
1
10
21
1.30
39270945--39270969
13
1.9
13
100
0
50
40
16
0
44
1.47
39271535--39271576
7
5.7
7
83
10
57
16
0
0
83
0.65
39271535--39271576
8
5.5
8
80
8
52
16
0
0
83
0.65
39271535--39271577
15
2.9
15
92
0
68
18
0
0
81
0.69
39271568--39271751
96
1.9
97
89
1
289
31
28
14
25
1.95
39275868--39275926
29
2.0
29
100
0
118
33
13
6
45
1.70
39279228--39279277
10
5.0
10
85
0
73
74
2
2
22
1.03
39283218--39283267
3
16.7
3
100
0
100
0
34
0
66
0.92
39284317--39284375
16
3.9
15
70
14
50
50
1
5
42
1.34
39284314--39284374
29
2.1
29
84
3
79
52
1
4
40
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39292728--39292765
16
2.5
16
87
8
53
76
5
7
10
1.15
39296872--39296929
29
2.0
29
96
0
107
32
13
18
34
1.91
39300572--39300618
15
2.8
17
78
18
53
63
0
2
34
1.06
39300584--39300626
22
2.0
22
90
0
68
58
0
4
37
1.19
39311815--39311957
40
3.6
40
88
5
209
25
27
23
23
2.00
39311783--39311957
80
2.2
80
85
7
232
25
26
22
25
2.00
39317148--39317219
16
4.6
16
87
1
101
27
23
6
41
1.80
39326555--39326600
23
2.0
23
100
0
92
52
8
0
39
1.33
39331963--39332004
21
2.0
22
86
13
61
64
4
0
30
1.14
39350518--39350547
12
2.5
12
100
0
60
43
0
10
46
1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290