genome.fa.s7.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  131  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230615--41230826	40	5.3	40	80	3	239	27	27	20	24	1.99
41230615--41230827	80	2.7	80	88	1	311	27	27	20	24	1.99
41236037--41236116	41	2.0	40	82	7	99	53	3	1	41	1.27
41237669--41237720	24	2.2	24	92	0	86	34	17	7	40	1.78
41237669--41237729	24	2.5	24	86	5	70	37	16	6	39	1.75
41242729--41242773	22	2.0	22	83	8	56	40	4	2	53	1.33
41260135--41260176	18	2.4	17	81	18	50	28	4	0	66	1.12
41265515--41265549	18	1.9	18	88	0	52	54	5	8	31	1.54
41268994--41269025	16	2.0	16	93	0	55	71	3	0	25	1.00
41270551--41270644	49	1.9	49	95	0	170	23	24	8	43	1.81
41273885--41273925	21	2.0	21	85	0	55	41	2	21	34	1.67
41275146--41275232	43	2.0	43	86	0	120	19	21	3	55	1.58
41287507--41287557	6	8.5	6	75	16	52	78	5	1	13	1.02
41288957--41289015	28	2.3	28	83	13	74	57	10	15	16	1.64
41289436--41289464	12	2.3	13	94	5	51	68	0	31	0	0.89
41302903--41302947	22	2.0	22	100	0	90	62	4	13	20	1.48
41305890--41305971	34	2.4	34	80	9	105	25	23	21	29	1.99
41309156--41309210	28	2.0	28	92	0	92	25	27	1	45	1.64
41313275--41313347	34	2.1	34	82	5	85	26	27	20	26	1.99
41315651--41315821	46	3.7	44	81	14	168	26	17	30	25	1.97
41315651--41315864	46	4.6	44	75	15	146	26	17	29	25	1.98
41315836--41315968	50	2.7	50	92	0	221	30	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41320092--41320143	21	2.5	21	81	9	63	34	1	17	46	1.59
41321172--41321222	26	2.0	26	84	0	66	39	3	11	45	1.59
41330554--41330721	60	2.8	59	83	5	189	54	2	1	41	1.23
41330617--41330709	29	3.3	26	68	25	71	51	3	0	45	1.17
41339430--41339552	65	1.9	65	91	0	201	43	15	21	19	1.87
41347286--41347475	41	4.7	41	94	0	328	34	24	21	20	1.97
41347720--41347767	21	2.2	23	77	11	55	18	4	35	41	1.70
41347729--41347776	21	2.2	23	92	7	82	18	4	37	39	1.70
41348836--41348865	14	2.1	14	100	0	60	26	36	0	36	1.57
41351993--41352045	22	2.4	23	84	12	76	28	5	22	43	1.76
41352820--41353004	43	4.3	43	82	5	214	24	16	30	28	1.96
41352820--41353004	86	2.2	86	89	2	273	24	16	30	28	1.96
41353166--41353195	10	3.0	10	95	0	51	33	0	0	66	0.92
41355148--41355190	23	1.9	22	86	13	61	58	2	0	39	1.11
41358096--41358220	48	2.7	46	81	7	148	25	29	17	27	1.98
41358193--41358316	47	2.7	45	80	12	135	24	29	18	28	1.98
41359447--41359480	10	3.3	10	84	8	50	29	8	8	52	1.62
41364651--41364697	24	2.0	24	91	0	76	36	2	38	23	1.67
41366113--41366220	27	4.1	27	76	15	102	16	23	24	36	1.94
41368797--41368834	19	2.0	20	85	15	53	39	23	0	36	1.55
41375170--41375207	19	2.0	20	85	15	53	39	23	0	36	1.55
41375432--41375557	46	2.7	46	90	0	189	31	26	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41377447--41377477	12	2.6	12	94	0	53	6	38	19	35	1.77
41386075--41386106	16	1.9	17	93	6	57	34	18	28	18	1.95
41387029--41387305	43	6.6	43	75	10	245	32	27	13	26	1.94
41387029--41387306	86	3.3	83	79	9	273	32	27	13	26	1.94
41389496--41389527	14	2.3	14	100	0	64	37	0	12	50	1.41
41391219--41391292	8	8.9	8	73	14	60	32	1	4	62	1.22
41391927--41391973	21	2.2	21	88	0	67	44	34	4	17	1.68
41392024--41392048	4	6.2	4	100	0	50	24	0	0	76	0.80
41392327--41392381	22	2.5	22	76	8	67	32	45	0	21	1.52
41392369--41392480	14	7.9	14	68	13	77	47	33	0	19	1.50
41392369--41392476	7	15.3	7	73	9	67	47	33	0	19	1.50
41392369--41392476	21	5.1	21	68	10	76	47	33	0	19	1.50
41392787--41392970	40	4.6	40	82	4	208	28	25	18	28	1.98
41392787--41392970	81	2.3	80	81	4	226	28	25	18	28	1.98
41392941--41393119	75	2.4	75	88	0	259	31	22	17	28	1.96
41393153--41393190	18	2.1	18	100	0	76	26	23	18	31	1.97
41393440--41393495	28	2.0	28	92	0	94	14	17	17	50	1.79
41397197--41397238	19	2.2	19	95	0	75	40	23	4	30	1.75
41403189--41403373	40	4.6	40	83	3	237	22	27	24	24	2.00
41407742--41407955	39	5.7	39	83	10	207	27	28	20	24	1.99
41407963--41408040	40	1.9	41	82	10	97	26	28	21	23	1.99
41415712--41415896	40	4.6	40	80	3	210	23	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41420390--41420419	15	1.9	16	93	6	53	10	36	0	53	1.35
41420390--41420419	8	3.9	8	91	8	53	10	36	0	53	1.35
41422099--41422170	19	3.8	19	81	5	83	19	1	2	76	0.99
41422100--41422170	6	11.3	6	76	8	70	18	1	2	77	0.97
41425161--41425224	23	2.6	23	82	9	74	43	7	17	31	1.77
41427951--41427991	18	2.3	17	84	12	55	21	41	0	36	1.54
41436546--41436631	41	2.1	41	85	6	113	26	13	23	36	1.93
41436991--41437029	15	2.6	15	91	0	69	17	0	41	41	1.50
41437064--41437147	15	5.6	15	77	8	66	23	1	41	33	1.62
41437075--41437147	7	10.0	7	76	8	74	24	0	42	32	1.55
41437075--41437147	22	3.3	22	84	5	94	24	0	42	32	1.55
41437306--41437345	14	2.9	14	96	0	71	12	0	47	40	1.41
41437306--41437352	14	3.3	15	88	11	64	12	0	46	40	1.42
41437299--41437352	21	2.6	21	82	11	74	14	0	46	38	1.45
41437468--41437556	26	3.4	26	87	4	135	42	7	4	44	1.53
41439146--41439196	25	2.0	25	100	0	102	43	15	7	33	1.76
41440511--41440599	44	2.0	44	97	0	169	44	17	8	28	1.79
41441494--41441554	28	2.2	28	93	0	104	39	1	4	54	1.32
41441516--41441576	24	2.5	24	76	5	61	42	0	3	54	1.17
41441543--41441603	15	4.2	15	73	21	58	47	0	1	50	1.10
41441518--41441581	20	3.2	20	68	4	67	39	0	3	57	1.14
41441543--41441610	29	2.3	28	82	9	82	44	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41441878--41441946	9	7.7	9	86	0	102	44	21	2	30	1.67
41446847--41446875	14	2.1	14	93	6	51	34	0	10	55	1.34
41447585--41447650	31	2.1	31	94	0	114	15	10	22	51	1.73
41447783--41447830	25	1.9	25	86	0	69	16	31	10	41	1.82
41463309--41463337	9	3.3	9	90	9	51	34	24	0	41	1.55
41466533--41466596	33	1.9	33	90	6	103	35	10	35	17	1.85
41470963--41471135	46	3.7	46	81	10	226	21	20	27	29	1.98
41470960--41471130	93	1.8	93	96	0	315	21	21	28	28	1.98
41476211--41476421	46	4.5	46	73	10	160	29	19	28	21	1.98
41476252--41476472	47	4.7	47	76	7	191	30	19	28	21	1.98
41482037--41482072	17	2.1	17	100	0	72	16	27	22	33	1.95
41486942--41487156	47	4.6	46	80	10	217	28	20	30	20	1.98
41486947--41487199	139	1.8	139	82	5	323	29	19	29	21	1.98
41493249--41493392	55	2.6	54	83	3	171	16	29	29	24	1.97
41507463--41507522	30	2.0	30	86	0	84	30	23	8	38	1.84
41509444--41509661	95	2.3	96	82	5	246	29	16	18	35	1.93
41509494--41509844	45	7.6	45	75	8	283	28	20	18	33	1.96
41509494--41509844	141	2.5	140	89	1	508	28	20	18	33	1.96
41509631--41509808	96	1.9	96	85	0	248	26	20	18	33	1.96
41514315--41514484	46	3.7	46	77	10	184	22	20	27	30	1.98
41514309--41514479	93	1.8	93	89	0	270	22	20	27	29	1.98
41514709--41514746	19	2.0	20	85	15	53	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41517032--41517069	20	1.9	20	100	0	76	42	18	10	28	1.83
41520368--41520489	22	5.3	22	62	21	61	25	29	11	33	1.91
41520340--41520828	47	10.3	47	92	2	689	27	29	9	33	1.89
41520715--41520944	116	2.0	116	99	0	451	30	26	8	33	1.87
41520764--41520895	67	2.0	67	96	0	246	31	25	9	34	1.87
41520831--41520958	49	2.7	49	95	2	224	30	26	7	35	1.85
41533453--41533680	48	4.9	48	73	7	216	28	22	21	27	1.99
41547937--41548000	31	2.1	30	85	2	83	28	20	14	37	1.91
41548215--41548425	23	9.1	23	91	2	343	31	22	20	25	1.98
41548476--41548542	20	3.3	20	91	0	107	32	22	11	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290