genome.fa.s7.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  213  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68940599--68940813	47	4.6	47	92	0	349	33	8	30	28	1.86
68942883--68942923	14	2.9	14	88	3	55	51	17	2	29	1.58
68945836--68945949	27	4.3	26	88	5	147	42	19	19	18	1.89
68945836--68946005	54	3.2	53	81	4	153	41	18	19	21	1.91
68945858--68946005	27	5.5	27	87	3	147	40	18	20	20	1.91
68947354--68947478	40	3.1	40	79	5	126	36	26	16	20	1.93
68948778--68948874	48	2.0	48	95	0	176	36	19	11	32	1.88
68950392--68950522	27	4.9	27	85	0	181	33	9	18	38	1.82
68956853--68956931	41	1.9	41	89	5	124	30	31	15	22	1.95
68960793--68961002	40	5.3	40	86	1	262	26	27	20	24	1.99
68961862--68961904	21	2.0	21	100	0	86	25	18	13	41	1.88
68966869--68967090	40	5.6	40	90	1	331	29	26	21	23	1.99
68970773--68971051	140	2.0	137	94	5	490	32	17	17	32	1.94
68978732--68978950	39	5.6	39	90	3	298	28	26	21	23	1.99
68978732--68978950	79	2.8	79	91	3	336	28	26	21	23	1.99
68987157--68987378	40	5.6	40	89	1	313	30	26	20	23	1.98
68990061--68990173	55	2.1	55	84	3	147	15	23	26	33	1.95
68994605--68994640	18	2.0	18	100	0	72	44	16	11	27	1.82
69000519--69000704	41	4.6	40	83	2	203	24	22	26	26	2.00
69000505--69000704	81	2.5	78	81	9	233	24	22	27	26	2.00
69000505--69000730	81	2.8	76	78	13	213	25	21	26	26	1.99
69002554--69002636	31	2.7	31	94	3	143	26	27	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69002849--69002900	25	2.1	25	89	3	79	26	19	23	30	1.98
69002860--69002925	25	2.6	25	90	0	96	21	22	28	27	1.99
69003128--69003299	27	6.4	27	80	6	161	26	19	18	36	1.94
69003252--69003403	81	1.9	80	87	1	223	28	7	22	41	1.80
69003254--69003582	27	12.3	27	80	2	182	32	8	22	36	1.85
69016109--69016144	17	2.1	19	85	15	51	69	2	8	19	1.27
69019676--69019716	18	2.3	18	95	4	75	26	19	9	43	1.82
69026438--69026472	16	2.2	16	89	0	52	25	11	5	57	1.56
69032468--69034774	778	2.9	779	85	3	3153	33	19	13	33	1.91
69034041--69036265	775	3.0	721	87	6	2938	32	19	14	33	1.92
69039304--69039515	27	7.9	27	90	0	298	24	14	18	42	1.87
69039869--69039946	18	4.3	18	79	6	86	24	19	12	43	1.86
69039865--69039946	36	2.3	36	85	4	112	24	19	13	42	1.87
69039903--69039952	18	2.8	18	76	11	57	20	18	12	50	1.78
69040908--69040940	16	2.0	17	94	5	59	0	33	48	18	1.48
69056172--69056254	42	2.0	42	82	0	103	26	24	16	32	1.96
69058963--69061511	786	3.2	782	88	2	3742	32	20	13	34	1.91
69060506--69060537	17	1.9	17	93	6	57	40	21	18	18	1.91
69063073--69063218	77	1.9	77	82	2	186	35	26	15	22	1.94
69068976--69069464	249	2.0	251	84	2	644	23	28	23	24	2.00
69073571--69073713	41	3.5	41	91	0	207	27	21	25	25	1.99
69073569--69073754	41	4.6	40	85	2	203	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69073569--69073754	81	2.3	81	84	5	225	24	22	26	26	2.00
69073555--69073780	81	2.8	76	77	12	211	24	21	27	26	1.99
69081112--69081190	31	2.6	31	94	4	135	15	21	35	27	1.93
69085994--69086026	12	2.6	13	85	9	50	9	45	0	45	1.35
69087890--69088034	40	3.6	40	85	4	193	25	24	26	23	2.00
69095954--69096138	40	4.6	39	81	6	194	24	22	27	26	2.00
69095954--69096136	79	2.3	81	82	7	214	24	22	26	26	2.00
69095991--69096171	79	2.3	78	77	12	190	27	20	25	26	1.99
69099366--69099397	16	2.0	16	93	0	55	34	18	0	46	1.49
69099597--69099991	50	7.9	50	77	4	391	30	25	16	26	1.97
69099601--69099992	151	2.6	151	92	0	658	31	25	16	26	1.97
69099600--69099991	101	3.9	100	77	5	335	31	25	17	26	1.97
69100340--69100386	19	2.3	20	82	10	60	48	14	0	36	1.44
69101703--69101838	48	2.8	48	85	0	173	27	23	22	26	1.99
69101617--69101838	91	2.4	95	83	5	265	27	21	22	28	1.99
69105628--69105728	48	2.1	48	85	3	132	28	20	24	25	1.99
69105952--69106011	27	2.2	28	96	3	113	36	15	15	33	1.88
69110510--69110682	46	3.7	46	79	10	199	22	20	27	29	1.99
69110507--69110677	93	1.8	93	92	0	288	22	21	28	28	1.99
69110879--69110916	19	2.0	20	85	15	53	36	0	23	39	1.55
69118018--69118190	46	3.7	46	79	10	208	21	20	27	29	1.98
69118015--69118185	93	1.8	93	93	0	297	21	21	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69118412--69118449	19	2.0	20	85	15	53	36	0	23	39	1.55
69120890--69120975	31	2.7	31	80	12	93	27	11	25	34	1.91
69123216--69123360	40	3.6	40	85	4	193	25	24	26	23	2.00
69131027--69131171	40	3.6	40	85	4	193	25	24	26	23	2.00
69133429--69133549	28	4.3	28	93	0	197	34	26	7	31	1.84
69139273--69139305	12	2.6	13	85	9	50	9	45	0	45	1.35
69140362--69140482	28	4.3	28	93	0	197	33	26	8	31	1.86
69140588--69140677	28	3.2	27	81	7	101	18	23	24	33	1.97
69140588--69140702	55	2.1	56	80	8	128	18	23	22	35	1.95
69142478--69142507	12	2.4	13	94	5	53	23	23	23	30	1.99
69142639--69142766	65	2.0	65	90	4	204	23	29	23	23	1.99
69150000--69150249	68	3.8	64	75	10	211	24	29	17	29	1.97
69151928--69151953	11	2.4	11	100	0	52	26	0	7	65	1.20
69156280--69156305	11	2.4	11	100	0	52	26	0	7	65	1.20
69158130--69158154	11	2.3	11	100	0	50	68	8	0	24	1.16
69158170--69158198	10	2.7	11	94	5	51	27	10	31	31	1.90
69159752--69159898	43	3.4	43	83	3	172	28	13	23	34	1.93
69163844--69164015	93	1.8	93	92	2	292	30	27	19	22	1.98
69163836--69164005	46	3.7	47	73	16	165	32	27	18	21	1.97
69171149--69171340	40	4.8	41	90	2	257	21	21	30	25	1.99
69179486--69179677	40	4.8	41	89	2	248	21	21	30	26	1.98
69186986--69187031	20	2.3	20	82	14	60	28	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69196958--69196996	18	2.2	18	100	0	78	23	33	20	23	1.97
69197602--69197700	48	2.0	49	96	1	182	29	24	4	42	1.73
69197801--69197922	50	2.5	49	81	5	133	27	21	14	36	1.92
69435467--69435530	28	2.3	28	89	2	94	32	26	7	32	1.85
69435636--69435724	28	3.2	28	84	7	94	21	23	22	32	1.98
69435649--69435724	28	2.7	28	91	2	116	23	23	19	32	1.97
69436186--69436224	19	2.1	19	85	0	51	15	5	7	71	1.26
69436803--69436836	10	3.3	10	84	8	50	29	8	8	52	1.62
69443322--69443382	28	2.2	28	90	0	95	32	26	8	32	1.86
69443492--69443582	28	3.2	28	82	4	112	19	23	23	34	1.97
69447026--69447122	6	15.8	6	70	16	65	47	14	18	19	1.83
69447035--69447145	31	3.5	31	87	1	141	50	11	18	19	1.77
69447281--69447374	27	3.5	26	84	5	107	35	19	25	20	1.96
69448032--69448199	27	6.3	27	83	6	189	26	20	19	34	1.96
69448050--69448199	81	1.9	81	86	8	216	25	19	20	35	1.95
69448232--69448628	27	14.7	26	76	10	217	31	8	20	40	1.82
69448244--69448617	81	4.6	81	81	4	281	31	8	19	40	1.82
69448292--69448628	27	12.5	27	83	1	388	31	8	19	40	1.81
69448317--69448628	54	5.8	54	89	0	446	31	8	20	40	1.81
69451569--69451618	26	1.9	26	83	0	64	28	20	20	32	1.97
69454008--69454054	8	5.9	8	82	9	51	29	2	25	42	1.67
69457980--69458067	42	2.1	42	86	0	122	14	23	32	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69459586--69459763	40	4.5	40	91	2	270	26	29	22	21	1.99
69466185--69466224	12	3.4	12	93	6	73	35	15	27	22	1.94
69469409--69469673	93	2.8	93	87	1	388	23	18	27	30	1.98
69469413--69469681	46	5.8	47	76	11	223	23	18	27	30	1.98
69495807--69495959	39	3.9	39	89	0	225	28	30	18	22	1.98
69495779--69495951	78	2.2	78	83	2	204	28	30	19	22	1.98
69506361--69506538	40	4.5	40	88	4	218	24	28	24	22	1.99
69514546--69514763	40	5.5	40	85	3	235	26	27	22	22	1.99
69537570--69537609	21	1.9	21	89	0	62	45	5	15	35	1.68
69539431--69539576	40	3.7	40	82	7	172	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290