genome.fa.s7.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  115  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35840361--35840476	54	2.2	54	93	1	198	44	9	4	41	1.56
35842435--35842511	33	2.4	32	81	14	95	25	3	10	59	1.47
35842816--35842861	24	2.0	23	83	12	58	54	8	0	36	1.32
35843733--35843782	18	2.8	17	79	11	55	64	6	0	30	1.18
35844647--35844703	24	2.4	24	96	0	105	28	43	12	15	1.83
35853113--35853204	40	2.3	40	87	5	134	23	21	27	27	1.99
35861055--35861149	40	2.4	40	94	0	172	24	21	26	28	1.99
35863822--35863954	40	3.3	40	89	2	196	32	27	18	22	1.97
35866159--35866263	23	4.6	23	75	10	99	26	22	18	32	1.97
35866151--35866236	46	1.9	46	88	4	131	26	23	20	29	1.99
35869818--35869877	15	4.0	15	84	0	75	41	30	6	21	1.79
35870060--35870293	110	2.1	110	92	0	387	50	19	10	19	1.76
35870921--35871011	40	2.3	40	96	0	173	24	23	8	43	1.81
35871626--35871813	9	20.1	9	66	19	57	61	3	2	32	1.26
35871738--35871825	20	4.4	20	72	13	65	65	3	2	28	1.20
35871714--35871825	59	1.9	59	83	3	145	62	4	3	29	1.32
35873070--35873099	5	6.0	5	92	0	51	76	0	23	0	0.78
35888596--35888642	22	2.2	21	84	3	58	36	21	8	34	1.84
35888613--35888710	19	5.2	19	90	7	155	36	15	10	37	1.81
35888624--35888710	36	2.3	37	90	7	140	37	13	11	36	1.81
35888613--35888720	36	2.9	35	75	20	103	37	14	10	37	1.80
35889289--35890214	220	4.2	218	74	12	633	27	24	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35889284--35890214	88	10.6	87	74	11	643	27	24	17	30	1.97
35889289--35890126	132	6.3	132	93	0	1399	27	24	17	30	1.97
35891132--35891188	8	7.9	7	76	20	55	3	14	0	82	0.80
35891134--35891187	18	2.9	18	83	2	72	3	14	0	81	0.82
35891134--35891180	12	3.9	12	78	10	51	4	12	0	82	0.80
35891134--35891190	13	4.8	12	79	12	64	3	14	0	82	0.80
35896820--35896866	22	2.2	21	84	3	58	36	21	8	34	1.84
35896837--35896932	19	5.2	19	90	10	146	36	14	10	38	1.81
35896859--35896932	17	4.5	15	81	15	60	36	13	10	39	1.80
35897511--35898485	132	7.4	132	93	0	1637	27	24	17	30	1.97
35900459--35900505	22	2.2	21	84	3	58	36	21	8	34	1.84
35900476--35900554	19	4.2	19	88	9	117	36	15	10	37	1.81
35900476--35900548	36	2.0	38	91	5	123	36	13	10	38	1.80
35900498--35900535	17	2.5	15	87	12	51	34	15	10	39	1.82
35900477--35900564	36	2.4	35	83	14	108	36	14	10	38	1.80
35911153--35911193	15	2.6	16	84	7	57	34	0	2	63	1.08
35917788--35918021	43	5.4	43	78	1	209	25	17	30	25	1.97
35917821--35917980	86	1.9	85	86	3	232	24	18	32	25	1.97
35917818--35918021	85	2.4	85	80	4	241	24	18	32	24	1.97
35917788--35918021	128	1.8	130	83	1	301	25	17	30	25	1.97
35918096--35918161	31	2.1	31	88	0	96	50	21	10	18	1.77
35918408--35918454	21	2.2	21	92	7	78	4	44	17	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35918411--35918459	21	2.5	20	84	15	59	6	44	16	32	1.72
35923965--35924174	9	24.1	9	73	15	115	36	0	16	47	1.47
35923982--35924178	43	4.6	43	85	6	247	36	0	15	47	1.46
35923974--35924174	90	2.2	92	90	1	316	35	0	16	47	1.47
35924345--35924401	29	2.0	29	89	0	87	54	0	0	45	0.99
35924349--35924400	14	3.4	16	69	15	56	50	0	0	50	1.00
35924542--35924615	16	4.2	16	71	24	51	52	2	0	44	1.15
35924570--35924630	20	3.2	19	71	15	63	50	6	0	42	1.28
35924548--35924630	39	2.2	39	95	2	150	51	4	0	43	1.23
35924550--35924615	20	3.3	20	73	12	73	54	3	0	42	1.15
35924190--35924824	203	3.3	193	90	6	983	50	6	8	35	1.58
35924567--35924633	19	3.5	19	74	11	73	52	5	0	41	1.26
35924728--35924791	29	2.2	29	82	0	74	53	3	3	40	1.33
35924741--35924806	29	2.3	29	89	5	107	53	0	0	46	1.00
35924747--35924796	14	3.3	16	72	16	61	46	0	0	54	1.00
35924750--35924804	15	3.7	15	74	13	60	50	0	0	49	1.00
35926123--35926166	16	2.7	16	85	3	52	86	4	6	2	0.77
35926124--35926168	22	2.0	22	86	0	63	84	4	8	2	0.84
35927514--35927547	16	2.1	16	88	0	50	55	11	17	14	1.68
35927876--35927925	19	2.6	19	90	0	82	42	12	40	6	1.67
35928085--35928130	21	2.1	22	84	4	58	43	2	36	17	1.61
35928298--35928575	115	2.4	117	79	8	304	36	20	15	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35928503--35928662	73	2.2	74	86	1	223	35	20	13	31	1.91
35929042--35929203	7	22.6	7	67	12	71	21	2	34	41	1.67
35930456--35930539	41	2.0	41	88	4	125	9	22	17	50	1.75
35932720--35932773	25	2.1	25	83	16	67	62	3	7	25	1.38
35932966--35933023	26	2.3	25	85	11	82	63	0	3	32	1.11
35935143--35935184	19	2.1	21	91	8	70	23	11	9	54	1.66
35937191--35937747	192	2.9	191	85	1	704	23	28	19	28	1.98
35937146--35937760	144	4.3	143	78	5	589	24	28	19	28	1.98
35937146--35937761	48	12.9	47	77	6	506	24	28	18	28	1.98
35954394--35954418	12	2.1	12	100	0	50	16	44	16	24	1.86
35955395--35955758	48	7.6	48	75	5	333	21	27	21	29	1.99
35955395--35955761	96	3.8	96	85	4	447	21	27	21	29	1.99
35959108--35959153	22	2.1	22	100	0	92	26	21	21	30	1.99
35977968--35978000	11	3.1	11	82	8	50	3	6	9	81	0.95
35978072--35978120	23	2.3	21	83	13	64	14	2	14	69	1.28
35978084--35978121	11	3.4	11	80	20	51	10	2	13	73	1.19
35985265--35985302	18	2.1	18	100	0	76	36	0	39	23	1.55
35987546--35987586	14	2.7	16	81	11	50	53	0	0	46	1.00
35992425--35992488	20	3.3	20	75	20	82	56	6	14	23	1.61
35992424--35992497	37	2.0	37	100	0	148	54	8	13	24	1.66
35995728--35995841	39	2.9	39	89	0	165	21	19	30	28	1.97
35995732--35995878	39	3.8	39	83	3	143	20	21	31	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36002874--36003033	39	4.1	39	82	1	178	21	20	28	29	1.98
36011797--36012003	53	3.8	53	75	5	191	37	16	25	20	1.93
36014333--36014413	39	2.0	40	97	2	155	27	32	7	33	1.84
36025733--36025828	42	2.3	42	81	3	113	22	32	20	23	1.98
36025753--36025834	42	2.0	42	90	4	130	20	29	23	26	1.99
36031553--36031777	40	5.6	40	85	5	292	23	22	28	26	1.99
36031557--36031777	83	2.7	80	85	6	286	22	22	28	25	1.99
36051149--36051267	43	2.8	42	80	7	150	31	15	25	27	1.95
36054178--36054214	14	2.5	15	83	16	51	21	40	0	37	1.54
36059428--36059465	20	1.9	20	84	10	51	42	13	23	21	1.88
36061350--36061669	46	7.0	46	90	0	471	38	14	24	23	1.92
36062272--36062308	18	2.1	18	100	0	74	32	32	5	29	1.80
36065820--36065930	40	2.8	40	83	5	118	25	28	20	25	1.99
36065867--36065997	40	3.3	40	81	2	156	29	26	19	24	1.99
36065870--36066050	80	2.3	80	79	10	192	27	27	20	24	1.99
36070252--36070427	98	1.8	97	81	3	219	26	28	18	26	1.98
36070247--36070428	49	3.7	49	76	5	172	25	28	19	26	1.99
36070448--36070568	46	2.6	46	84	2	152	23	30	15	29	1.96
36077000--36077266	49	5.7	49	73	13	174	25	26	19	28	1.99
36076956--36077229	141	1.9	145	81	10	332	25	27	18	28	1.98
36085981--36086018	19	2.0	20	84	5	51	21	10	15	52	1.72
36087720--36087860	27	5.2	27	74	11	128	33	21	24	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36087720--36087863	54	2.7	54	91	2	227	33	22	24	20	1.97
36089474--36089581	26	4.2	26	91	0	180	36	24	7	32	1.83
36090861--36090901	21	2.0	21	85	0	55	29	0	31	39	1.57
36092164--36092203	20	2.0	20	90	0	62	40	5	15	40	1.68
36092319--36092372	22	2.3	23	84	6	65	50	0	9	40	1.35
36092932--36092968	17	2.2	17	100	0	74	62	10	10	16	1.55
36094438--36094716	95	2.9	93	83	3	342	27	18	18	34	1.95
36098664--36098728	28	2.3	28	89	0	94	33	26	7	32	1.85
36099350--36099390	18	2.3	18	86	0	55	24	2	4	68	1.22
36102874--36103045	46	3.7	46	77	13	181	28	27	21	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290