genome.fa.s7.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  117  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36425667--36425929	68	3.9	68	83	0	292	24	20	16	38	1.92
36425679--36425929	136	1.8	136	82	0	322	24	19	15	39	1.91
36430327--36430379	26	2.0	26	82	7	63	20	16	20	41	1.90
36431632--36431726	12	7.9	12	65	9	50	21	37	6	34	1.79
36431628--36431733	24	4.4	23	90	7	149	18	37	5	37	1.75
36437841--36437893	26	2.0	26	82	7	63	22	16	20	39	1.92
36439142--36439247	24	4.4	24	86	5	142	18	38	5	36	1.75
36444915--36445026	56	2.0	56	85	3	154	31	25	15	28	1.95
36444999--36445058	31	1.9	32	89	3	95	25	28	18	28	1.98
36453180--36453241	22	2.7	23	87	7	90	59	3	4	32	1.34
36453386--36453440	29	1.9	28	85	3	74	61	0	7	30	1.23
36453589--36453627	19	2.0	18	85	14	51	61	0	2	35	1.10
36455346--36455761	45	9.3	45	73	6	301	31	19	20	28	1.97
36455343--36455762	89	4.7	89	73	6	298	32	19	20	28	1.96
36455338--36455740	134	3.0	133	88	1	592	32	19	19	29	1.96
36455780--36456036	44	5.8	43	71	11	110	25	25	19	29	1.98
36455824--36456261	132	3.3	132	87	1	592	24	24	20	30	1.98
36457521--36457589	9	6.8	10	83	11	79	18	0	2	78	0.88
36457532--36457577	11	4.0	12	77	8	51	19	0	2	78	0.86
36457521--36457589	21	3.4	20	81	15	79	18	0	2	78	0.88
36458056--36458100	9	4.8	9	86	5	54	4	8	2	84	0.84
36458058--36458110	26	2.0	27	81	3	63	7	9	3	79	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36462278--36462337	22	2.6	22	89	5	84	60	3	6	30	1.39
36462334--36462397	26	2.5	25	77	10	67	57	3	10	28	1.48
36462718--36462796	27	3.0	27	81	5	81	59	2	6	31	1.36
36472083--36472131	20	2.4	21	83	10	66	57	0	0	42	0.99
36472118--36472142	8	3.1	8	100	0	50	48	0	0	52	1.00
36472368--36472418	21	2.6	19	84	9	59	66	0	5	27	1.14
36472601--36472632	9	3.6	9	95	0	55	15	0	3	81	0.82
36485935--36486017	30	2.8	30	83	7	107	31	18	18	32	1.94
36488308--36488692	192	2.0	192	100	0	770	34	9	18	36	1.84
36489693--36489726	8	4.4	8	92	7	61	23	0	23	52	1.47
36491175--36491309	43	3.1	42	78	8	139	24	17	25	33	1.96
36499277--36499401	28	4.5	28	68	4	81	32	19	20	28	1.97
36504649--36504752	52	2.0	52	98	0	199	40	11	22	25	1.87
36518096--36518145	25	2.0	24	92	3	82	22	22	16	40	1.91
36518217--36518283	23	2.8	25	73	8	70	26	20	8	43	1.82
36520150--36520269	43	2.8	42	86	2	168	29	16	25	29	1.97
36521376--36521400	13	1.9	13	100	0	50	16	28	24	32	1.96
36522950--36523120	93	1.8	93	93	2	299	29	28	20	21	1.98
36522945--36523117	46	3.7	46	77	14	194	30	27	20	21	1.98
36529707--36529786	38	2.1	38	100	0	160	28	15	28	27	1.96
36537924--36538034	25	4.4	25	83	2	134	27	23	24	24	2.00
36544096--36544128	14	2.3	15	94	5	59	54	0	18	27	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36544391--36544430	21	1.9	21	84	0	53	40	17	22	20	1.92
36549456--36549549	45	2.1	45	97	0	179	26	19	2	52	1.57
36550415--36550605	55	3.5	54	83	6	235	22	24	18	35	1.96
36550590--36550711	47	2.6	47	93	0	208	25	24	14	35	1.94
36550711--36550800	47	1.9	47	81	4	110	21	25	23	30	1.99
36557073--36557262	55	3.5	53	80	6	204	24	24	16	34	1.95
36557248--36557358	47	2.4	47	95	0	195	27	23	14	35	1.93
36557371--36557460	47	1.9	47	84	4	119	23	23	18	34	1.96
36562286--36562331	16	2.9	16	90	3	67	50	17	23	8	1.74
36562580--36562644	28	2.3	28	89	5	96	33	27	7	30	1.85
36562749--36562838	28	3.2	28	84	7	121	18	23	23	34	1.96
36562749--36562863	27	4.1	28	83	5	128	18	23	21	36	1.95
36562749--36562863	55	2.1	56	87	8	164	18	23	21	36	1.95
36563916--36563949	10	3.3	10	84	8	50	29	8	8	52	1.62
36569310--36569369	24	2.5	25	76	13	63	3	35	0	61	1.12
36570885--36570984	39	2.6	38	81	10	114	27	29	20	24	1.99
36607402--36607426	13	1.9	13	100	0	50	88	4	8	0	0.64
36609179--36609333	27	5.7	27	78	7	154	28	27	17	26	1.98
36609158--36609334	55	3.3	55	77	10	177	28	28	16	26	1.97
36609179--36609333	82	1.9	80	84	5	204	28	27	17	26	1.98
36621396--36621441	20	2.2	21	85	11	60	17	6	0	76	1.00
36623764--36623797	17	1.9	18	94	5	61	17	5	2	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36623747--36623814	17	4.0	16	77	11	55	20	5	2	70	1.21
36624480--36624558	40	2.0	40	97	0	149	44	11	18	25	1.83
36627191--36627303	43	2.6	45	84	8	144	25	19	27	27	1.99
36638575--36638621	18	2.6	19	76	10	53	23	6	0	70	1.10
36643018--36643247	116	2.0	116	96	0	424	30	13	12	43	1.81
36648482--36648531	26	1.9	26	84	8	66	58	4	0	38	1.17
36677760--36677873	29	4.0	29	85	6	135	28	28	14	28	1.96
36678093--36678125	15	2.2	15	94	0	57	9	24	21	45	1.80
36690350--36690448	49	2.0	49	96	0	180	24	17	15	43	1.87
36691694--36691727	9	3.8	9	88	0	50	47	0	0	52	1.00
36693762--36693798	18	2.1	17	90	5	56	56	2	0	40	1.13
36695327--36695398	22	3.3	22	76	7	74	37	19	8	34	1.82
36695316--36695421	44	2.4	44	88	0	149	37	19	7	34	1.80
36695343--36695421	22	3.6	22	73	0	77	39	20	6	34	1.78
36697033--36697161	46	2.8	46	95	0	222	29	29	21	19	1.98
36697041--36697180	46	3.0	45	88	4	140	28	29	21	20	1.98
36704513--36704641	46	2.8	46	95	0	222	29	29	21	19	1.98
36704521--36704660	46	3.0	45	88	4	140	28	29	21	20	1.98
36723952--36724011	14	4.3	14	70	8	50	28	5	23	43	1.74
36724269--36724427	53	3.0	53	83	0	201	35	14	22	28	1.93
36732499--36732549	25	2.0	25	100	0	102	41	11	19	27	1.86
36737327--36737378	16	3.2	16	94	0	86	28	0	36	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36737359--36737453	45	2.1	44	88	1	136	34	5	27	32	1.79
36737534--36737764	124	1.8	127	92	4	396	45	3	3	47	1.36
36737739--36737773	18	2.0	17	88	5	52	54	0	0	45	0.99
36737547--36737932	124	3.0	125	82	8	390	47	4	2	44	1.38
36737868--36737902	18	2.0	17	88	5	52	60	0	0	40	0.97
36737943--36737989	17	2.9	16	78	18	53	46	2	6	44	1.40
36737962--36737995	17	2.0	17	94	0	59	50	0	5	44	1.26
36738028--36738221	92	2.1	91	88	5	284	46	4	4	44	1.41
36742579--36742681	44	2.3	45	83	3	118	31	21	12	34	1.91
36755223--36755274	21	2.5	20	81	12	59	59	25	5	9	1.51
36757904--36757942	19	2.1	19	85	0	51	38	2	15	43	1.60
36760006--36760131	46	2.8	45	89	4	182	29	19	30	21	1.97
36761501--36761540	21	2.0	20	90	5	62	10	37	30	22	1.87
36764230--36764262	16	2.0	17	94	5	59	84	0	9	6	0.76
36767324--36767485	77	2.1	78	88	1	236	24	21	28	25	1.99
36767324--36767485	39	4.2	39	88	4	220	24	21	28	25	1.99
36774984--36775026	22	2.0	22	100	0	86	39	9	9	41	1.69
36775432--36775592	39	4.2	39	85	1	198	24	20	28	26	1.99
36777101--36777191	46	2.0	46	93	2	157	28	6	26	38	1.81
36780115--36780275	57	2.8	57	88	1	234	24	24	16	34	1.95
36780160--36780247	29	3.1	28	68	4	86	25	23	20	30	1.98
36780427--36780585	53	3.0	53	82	0	194	27	23	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36782677--36782849	46	3.7	47	82	10	189	22	30	19	27	1.98
36782678--36782898	94	2.4	91	82	10	243	21	30	19	28	1.98
36787533--36787595	26	2.4	26	84	7	74	36	25	9	28	1.87
36787701--36787811	27	4.1	27	79	7	109	18	24	22	34	1.96
36787701--36787811	54	2.1	54	84	3	143	18	24	22	34	1.96
36795579--36795673	27	3.5	27	80	12	88	18	27	22	31	1.97
36800597--36800720	47	2.6	48	83	6	157	29	31	12	26	1.93
36800595--36800805	47	4.5	47	72	12	148	26	31	16	25	1.96
36800728--36800885	79	2.0	79	98	0	307	20	32	22	24	1.98
36800815--36800943	47	2.8	45	79	12	136	21	30	20	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290