genome.fa.s7.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  105  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32480722--32480780	25	2.4	25	94	0	109	40	10	25	23	1.86
32480655--32480780	50	2.5	50	80	5	130	38	14	25	21	1.91
32486344--32486420	39	2.0	39	97	0	145	22	7	35	35	1.83
32489876--32489960	41	2.1	41	97	0	161	36	11	15	36	1.84
32490895--32490937	22	2.0	22	86	9	61	25	4	37	32	1.77
32492415--32492472	17	3.8	16	71	15	59	24	6	1	67	1.25
32495129--32495322	49	4.0	48	81	3	226	25	17	27	29	1.97
32495125--32495309	99	1.9	99	90	2	300	25	16	28	30	1.96
32497588--32497643	13	4.5	13	79	20	75	48	12	0	39	1.41
32504829--32504864	5	7.2	5	100	0	72	80	0	0	19	0.71
32505717--32505782	13	5.5	13	67	26	56	46	12	1	39	1.50
32505717--32505791	23	3.3	23	90	0	123	48	12	1	38	1.49
32507191--32508633	727	2.0	727	98	0	2771	32	13	25	28	1.94
32517098--32517131	5	6.6	5	86	6	50	17	2	0	79	0.86
32517098--32517131	16	2.2	15	89	5	50	17	2	0	79	0.86
32542701--32542839	48	2.9	48	87	0	197	28	25	20	25	1.99
32551623--32551673	25	2.0	25	92	0	84	27	13	17	41	1.87
32554120--32554275	43	3.6	42	80	9	172	30	28	17	23	1.97
32579935--32580133	44	4.6	44	81	4	199	31	24	18	25	1.98
32582282--32582344	30	2.1	30	84	0	81	36	12	20	30	1.90
32583302--32583376	33	2.3	33	90	0	123	49	17	13	20	1.79
32586418--32586554	48	2.9	47	87	4	202	34	27	20	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32591506--32591700	48	4.1	48	84	2	259	35	30	16	16	1.92
32601634--32601819	40	4.7	40	80	6	198	26	26	22	24	2.00
32612488--32612540	6	8.7	6	78	2	52	35	18	15	30	1.92
32613357--32613412	26	2.1	27	87	9	89	51	14	16	17	1.76
32613364--32613415	26	2.0	26	100	0	104	46	15	15	23	1.83
32619759--32619826	34	2.0	34	94	0	118	45	29	2	22	1.67
32621494--32621649	84	1.9	84	82	2	197	33	23	14	28	1.94
32640801--32640890	46	2.0	46	90	0	144	61	10	4	24	1.46
32641556--32641616	31	2.0	31	100	0	122	36	1	9	52	1.45
32641596--32641628	12	2.8	12	90	0	57	48	0	0	51	1.00
32642172--32642264	36	2.6	36	98	0	177	21	31	15	32	1.94
32646142--32646172	14	2.2	14	100	0	62	48	0	0	51	1.00
32646249--32646279	16	1.9	16	93	0	53	25	0	3	70	1.02
32646291--32646351	18	3.3	18	76	17	61	42	6	0	50	1.28
32647458--32647497	18	2.2	18	86	0	53	20	20	12	47	1.81
32651444--32651492	18	2.8	17	87	6	62	36	26	22	14	1.92
32652144--32652194	26	2.0	26	88	0	75	19	9	3	66	1.36
32653817--32653869	16	3.3	16	78	0	61	41	5	20	32	1.76
32653806--32653868	32	2.0	32	87	6	92	42	4	22	30	1.74
32661588--32661669	40	2.1	39	93	2	137	34	17	9	39	1.82
32662307--32662346	20	2.0	20	85	4	55	30	0	5	65	1.14
32662407--32662467	31	2.0	31	93	0	104	44	6	21	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32666638--32666728	19	4.9	19	90	8	152	36	14	10	38	1.81
32666631--32666728	35	2.7	37	87	12	150	35	15	10	38	1.81
32667574--32667603	12	2.5	12	94	0	51	70	13	0	16	1.18
32667620--32667696	20	4.2	18	73	14	59	55	2	1	40	1.22
32668365--32668408	17	2.6	16	82	10	52	75	0	2	22	0.92
32669084--32669115	15	2.2	15	94	5	57	25	0	0	75	0.81
32687920--32688020	33	3.1	33	98	0	193	27	15	18	37	1.92
32692002--32692029	13	2.2	13	100	0	56	53	0	0	46	1.00
32692341--32692380	21	2.0	20	85	5	53	25	5	2	67	1.23
32694176--32694243	35	1.9	35	90	0	109	32	10	11	45	1.74
32699128--32699158	14	2.2	14	94	0	53	25	16	48	9	1.76
32701171--32701409	3	76.3	3	66	17	60	28	10	2	58	1.42
32701608--32701875	125	2.1	125	82	5	310	30	14	18	36	1.91
32707984--32708132	40	3.7	40	88	5	169	25	20	26	27	1.99
32716109--32716295	40	4.7	40	89	2	225	28	19	22	28	1.98
32716109--32716341	80	2.9	80	85	3	274	27	20	24	28	1.99
32716128--32716345	40	5.4	40	88	3	217	25	19	25	29	1.98
32720115--32720222	26	4.2	26	95	0	189	31	5	25	37	1.79
32723632--32723869	117	2.0	118	82	4	293	46	9	15	28	1.77
32723957--32724050	46	2.1	45	80	13	104	61	4	7	26	1.41
32724094--32724135	22	1.9	22	85	9	59	64	7	0	28	1.20
32724247--32724291	22	2.1	22	87	4	65	57	0	4	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32725780--32726076	89	3.4	87	70	7	249	30	21	22	25	1.98
32725682--32725933	133	1.9	133	89	3	391	31	21	21	26	1.98
32725682--32725987	133	2.3	133	81	4	314	31	20	21	26	1.98
32725778--32726142	177	2.1	177	90	2	572	29	21	21	26	1.99
32726270--32726653	45	8.6	45	72	8	155	29	19	21	29	1.98
32725691--32726653	44	21.8	45	68	6	349	30	20	21	27	1.98
32726315--32726524	89	2.3	90	77	8	205	30	19	22	28	1.98
32726672--32726711	20	2.0	20	100	0	80	45	15	5	35	1.68
32727247--32727602	3	115.7	3	67	17	90	28	9	2	59	1.40
32727244--32727355	20	5.6	20	66	16	61	27	7	0	65	1.19
32727276--32727328	23	2.3	23	83	0	61	35	7	0	56	1.28
32727798--32728066	125	2.2	125	79	5	285	31	14	18	36	1.90
32734362--32734400	13	2.9	13	84	3	51	20	0	33	46	1.51
32735293--32735366	37	2.0	37	97	0	139	44	8	8	39	1.64
32750691--32750738	24	2.0	24	100	0	96	29	16	20	33	1.95
32757043--32757322	3	94.3	3	75	9	184	62	2	6	28	1.32
32761647--32761987	174	2.0	175	98	0	666	31	8	18	41	1.79
32763962--32764000	16	2.5	16	87	4	53	61	2	10	25	1.41
32779727--32779788	31	2.0	31	93	0	106	37	14	17	30	1.90
32779796--32779836	20	2.2	20	86	8	59	24	14	0	60	1.34
32790276--32790308	6	5.5	6	100	0	66	30	0	0	69	0.88
32792408--32792461	21	2.6	21	93	0	90	29	7	33	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32795927--32795967	20	2.0	20	90	0	64	12	26	39	21	1.89
32810048--32810153	37	2.8	38	91	2	162	24	33	18	23	1.97
32810296--32810585	48	6.0	48	93	0	490	31	26	5	36	1.80
32813993--32814041	22	2.2	23	88	3	73	22	44	14	18	1.85
32822167--32822352	39	4.8	39	82	6	148	29	29	20	20	1.98
32822199--32822354	78	2.0	77	81	6	181	26	30	21	21	1.98
32822247--32822354	39	2.8	39	95	0	189	26	31	20	21	1.98
32828780--32828972	39	5.0	40	86	4	159	27	29	22	20	1.98
32828809--32828972	78	2.1	78	84	5	208	26	29	22	21	1.99
32828847--32828972	39	3.2	39	95	0	216	26	30	21	21	1.98
32838931--32839103	84	2.1	83	95	1	310	34	17	15	32	1.91
32843493--32843646	43	3.6	43	75	5	132	29	23	16	29	1.96
32851263--32851365	43	2.4	43	81	4	136	33	23	14	28	1.94
32852606--32852631	13	2.0	13	100	0	52	15	23	30	30	1.95
32853056--32853098	10	4.1	10	80	11	50	53	27	2	16	1.55
32853820--32853974	43	3.6	43	75	13	140	30	24	18	25	1.98
32858407--32858485	40	2.0	40	94	0	140	21	20	18	39	1.93
32860855--32860977	42	2.9	42	80	0	129	44	18	17	19	1.87
32861133--32861309	43	4.2	43	73	10	150	39	26	14	19	1.90
32861162--32861343	85	2.2	85	82	6	228	40	24	13	21	1.90
32864486--32864626	72	2.0	72	84	2	185	41	21	17	19	1.90
32864822--32864851	15	2.0	15	93	0	51	36	13	3	46	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32868566--32868693	35	3.6	35	84	1	130	42	32	8	16	1.78
32869983--32870162	35	5.1	35	80	6	186	36	3	28	31	1.75
32869983--32870198	70	3.1	70	83	1	227	35	4	29	31	1.76
32870099--32870197	35	2.8	35	81	0	117	33	5	31	30	1.79
32873014--32873092	37	2.1	37	90	0	122	25	31	18	24	1.98
32873211--32873717	47	10.7	47	95	1	863	28	29	8	32	1.87
32873211--32873696	190	2.6	190	95	0	859	29	29	8	32	1.87
32873266--32873717	237	1.9	235	96	0	798	29	28	8	32	1.87
32877540--32877811	40	6.8	40	89	0	418	26	25	20	27	1.99
32877731--32877797	23	3.2	23	60	24	56	23	25	23	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290