genome.fa.s7.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  113  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34954926--34955029	51	2.0	51	98	0	199	35	14	25	25	1.93
34956292--34956641	46	8.0	45	81	13	408	22	24	15	38	1.92
34956474--34956630	38	3.9	38	87	12	242	23	25	17	33	1.96
34956426--34956641	84	2.6	84	99	0	423	24	24	16	34	1.95
34959053--34959120	29	2.3	30	87	5	93	29	17	5	47	1.71
34961150--34961188	20	2.0	20	89	0	60	56	2	0	41	1.13
34965287--34965369	42	2.0	42	85	0	112	27	15	26	30	1.96
34980092--34980132	21	2.0	21	81	18	50	31	19	26	21	1.97
34984707--34984771	17	3.7	17	76	13	69	69	4	4	21	1.25
34984983--34985012	15	2.0	15	100	0	60	26	6	13	53	1.64
34986259--34986392	67	2.0	67	98	0	259	23	11	19	45	1.82
34987709--34987764	28	2.0	29	89	3	87	19	46	19	14	1.84
34990470--34990517	23	2.1	23	96	0	87	22	6	20	50	1.71
34991213--34991243	16	2.0	15	93	6	53	41	0	0	58	0.98
34991298--34991328	14	2.2	14	94	0	53	32	32	25	9	1.88
35003406--35003623	49	4.6	49	72	12	150	27	19	27	25	1.99
35003401--35003581	93	2.0	91	83	7	231	25	18	29	26	1.98
35017422--35017508	45	1.9	45	85	0	120	25	11	20	42	1.86
35024368--35024422	17	3.3	17	70	14	60	36	7	12	43	1.71
35024358--35024423	33	2.0	33	96	0	123	39	6	10	43	1.64
35025182--35025295	20	5.2	21	67	22	58	51	2	1	43	1.25
35033257--35033300	23	1.9	23	86	9	63	47	29	4	18	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35036807--35037121	47	6.7	49	76	11	225	22	28	19	29	1.98
35036944--35037117	94	1.9	94	90	0	276	21	28	19	31	1.97
35039998--35040037	18	2.3	18	86	4	55	25	0	0	75	0.81
35046944--35046972	14	2.1	14	100	0	58	51	6	0	41	1.28
35047022--35047060	11	3.5	11	86	13	62	74	0	25	0	0.82
35047022--35047061	16	2.4	17	83	4	55	75	0	25	0	0.81
35047289--35047345	30	2.0	28	83	13	71	38	1	21	38	1.64
35051371--35051588	46	4.7	46	74	13	153	24	30	17	27	1.97
35064132--35064381	49	5.2	48	72	12	149	25	30	18	26	1.98
35071847--35072014	49	3.6	46	80	10	171	28	31	16	23	1.96
35071847--35072063	93	2.3	95	80	6	226	26	29	18	24	1.98
35074802--35074841	21	2.0	21	95	5	73	52	10	32	5	1.56
35075720--35075765	20	2.3	20	88	0	65	50	0	13	36	1.41
35087930--35087973	21	2.3	18	88	11	61	36	0	6	56	1.26
35087979--35088026	20	2.4	20	85	0	60	31	4	0	64	1.12
35087883--35088028	9	15.2	9	64	22	57	35	1	3	59	1.23
35095044--35095070	13	2.1	13	100	0	54	22	14	33	29	1.94
35109238--35109346	55	2.0	55	96	0	200	27	21	18	33	1.96
35113815--35113868	24	2.2	24	93	0	90	29	25	12	31	1.93
35122862--35123029	6	28.0	6	100	0	336	50	16	0	33	1.46
35123900--35124009	47	2.3	47	85	1	139	43	11	14	30	1.81
35127224--35127257	16	2.2	15	89	5	50	41	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35135478--35135554	25	3.2	25	64	14	70	31	22	5	41	1.75
35135465--35135561	48	2.0	48	100	0	194	32	22	6	38	1.79
35142466--35142558	42	2.2	42	98	0	177	18	40	24	16	1.90
35143438--35143608	47	3.6	46	80	9	184	22	28	19	29	1.98
35147516--35147643	49	2.6	49	78	9	136	24	25	20	29	1.99
35147662--35147790	46	2.8	46	82	5	154	23	27	21	27	1.99
35164806--35164927	50	2.5	48	81	5	140	30	20	27	22	1.98
35166593--35166623	11	2.8	11	95	0	53	19	32	19	29	1.96
35167763--35167823	30	2.1	29	93	3	104	60	11	3	24	1.46
35168569--35168608	16	2.4	16	88	12	55	57	0	0	42	0.98
35168569--35168607	17	2.4	17	87	12	55	58	0	0	41	0.98
35176415--35176449	14	2.5	14	95	0	61	34	8	28	28	1.87
35186233--35186274	22	1.9	22	95	0	75	40	14	9	35	1.78
35187751--35187968	40	5.5	40	90	1	305	22	22	28	25	1.99
35195033--35195250	40	5.5	40	86	1	278	23	22	28	24	2.00
35199153--35199196	21	2.1	21	100	0	88	52	4	20	22	1.65
35199156--35199204	21	2.3	21	92	0	80	51	6	14	28	1.66
35201280--35201400	46	2.6	46	85	5	154	23	28	19	28	1.98
35208924--35209044	47	2.6	46	80	8	138	28	16	29	24	1.97
35209020--35209107	46	1.9	46	83	4	115	31	14	26	27	1.95
35212320--35212454	38	3.4	38	72	15	119	40	15	0	43	1.52
35215631--35215672	22	2.0	22	90	4	68	71	2	4	21	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35215618--35215680	28	2.2	28	94	0	108	73	1	4	20	1.11
35215655--35215699	19	2.4	19	88	3	65	73	2	0	24	0.95
35215618--35215694	28	2.9	28	88	5	106	72	2	3	20	1.12
35220223--35220286	27	2.2	29	76	15	71	39	1	4	54	1.31
35220258--35220304	23	2.0	24	87	4	69	34	2	4	59	1.29
35220995--35221021	12	2.2	12	100	0	54	48	0	7	44	1.31
35223723--35223768	22	2.1	21	84	4	56	60	2	0	36	1.09
35223982--35224061	9	8.5	10	70	15	55	30	1	2	66	1.13
35224033--35224095	26	2.3	28	81	8	76	33	1	0	65	1.03
35224127--35224165	16	2.3	18	83	16	57	28	0	0	71	0.86
35228196--35228225	9	3.3	9	90	0	51	46	13	10	30	1.75
35228525--35228555	16	1.9	16	93	0	53	38	6	6	48	1.55
35237955--35238031	40	1.9	40	91	0	127	25	14	32	27	1.94
35240788--35240822	17	2.0	18	88	5	54	60	11	0	28	1.32
35240943--35241053	43	2.6	43	86	1	143	23	35	24	17	1.95
35242237--35242460	42	5.5	41	83	7	217	32	27	15	24	1.95
35242323--35242458	40	3.4	40	79	7	134	30	27	15	25	1.96
35242267--35242462	81	2.4	82	82	9	233	33	27	14	24	1.94
35243532--35243557	12	2.2	12	100	0	52	50	19	0	30	1.48
35245450--35245674	40	5.7	40	83	6	242	25	28	20	25	1.99
35245606--35245683	40	1.9	41	82	10	97	26	28	20	24	1.99
35253378--35253602	40	5.7	40	82	6	233	25	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35253534--35253611	40	1.9	41	82	10	97	26	28	20	24	1.99
35262188--35262363	46	3.8	46	77	15	191	21	21	28	28	1.98
35262184--35262355	93	1.8	93	93	0	299	20	21	29	27	1.98
35265314--35265382	15	4.6	15	83	0	84	11	17	13	57	1.64
35265305--35265392	30	3.0	30	81	8	99	10	17	15	56	1.66
35267729--35267902	45	3.8	47	77	19	188	20	21	29	27	1.98
35267734--35267907	46	3.8	45	79	13	203	20	21	29	28	1.98
35284150--35284176	14	1.9	14	100	0	54	55	7	14	22	1.64
35300485--35300771	40	7.2	40	91	1	371	29	27	20	22	1.98
35303463--35303553	31	3.0	30	77	4	94	42	15	10	30	1.81
35305174--35305235	20	3.1	20	68	9	54	17	27	19	35	1.94
35305330--35305401	20	3.6	21	70	7	60	20	29	13	36	1.92
35305148--35305424	79	3.5	78	83	3	322	17	27	18	36	1.93
35305148--35305407	40	6.6	39	84	2	313	17	26	18	37	1.93
35305959--35306030	20	3.7	20	74	9	76	13	29	20	36	1.92
35309588--35309851	40	6.6	40	87	5	365	28	25	21	24	1.99
35311729--35311786	29	2.0	29	96	0	107	46	3	0	50	1.18
35322620--35322686	21	3.2	21	64	16	57	25	8	13	52	1.69
35322614--35322700	42	2.1	42	100	0	174	26	9	11	52	1.67
35324086--35324142	30	1.9	30	96	0	105	21	36	24	17	1.94
35326608--35326660	20	2.6	20	96	3	97	15	15	13	56	1.67
35329065--35329182	45	2.7	43	78	6	148	26	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35329452--35329649	76	2.6	76	86	1	254	22	21	25	30	1.99
35329479--35329649	38	4.5	38	89	1	236	21	21	25	31	1.98
35329642--35329810	45	3.8	44	82	6	189	23	23	27	24	2.00
35341521--35341636	56	2.1	57	95	1	207	37	10	6	44	1.65
35341996--35342049	20	2.7	21	77	8	58	20	9	0	70	1.14
35342001--35342060	25	2.4	24	73	13	59	23	6	0	70	1.11
35342042--35342072	15	2.1	15	93	0	53	32	3	0	64	1.09
35343051--35343105	27	2.0	27	100	0	110	43	10	25	20	1.84
35366092--35366157	31	2.1	31	100	0	132	18	27	30	24	1.98
35378290--35378409	56	2.1	56	98	0	231	45	9	23	22	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290