Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  151  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48378741--48378854
40
2.8
39
80
5
120
27
14
23
34
1.94
48381746--48381930
79
2.3
82
83
7
229
24
27
22
24
2.00
48381727--48381930
40
5.1
40
81
8
229
24
27
22
25
2.00
48389045--48389229
79
2.3
82
83
7
229
24
27
22
24
2.00
48389026--48389229
40
5.1
40
81
8
229
24
27
22
25
2.00
48397477--48397647
45
3.8
45
90
6
260
23
21
26
28
1.99
48407266--48407520
55
4.8
54
81
9
287
36
18
24
20
1.95
48407273--48407473
108
1.8
110
90
4
327
34
18
24
22
1.96
48410208--48410434
48
4.7
48
89
0
337
29
26
19
25
1.98
48410396--48410494
37
2.7
37
79
6
103
26
27
19
27
1.99
48412099--48412414
46
6.7
47
75
11
211
28
19
30
21
1.98
48412141--48412417
146
1.9
140
83
7
351
28
20
29
21
1.98
48421878--48421922
20
2.2
20
88
0
63
48
2
13
35
1.54
48425629--48426314
47
14.6
47
92
0
1111
29
28
8
33
1.87
48434425--48434813
39
9.9
39
82
2
384
28
27
21
22
1.99
48434405--48434813
79
5.2
78
79
5
340
28
26
21
22
1.99
48434393--48434791
158
2.5
158
83
2
453
29
26
21
22
1.99
48434405--48434813
119
3.5
116
80
6
417
28
26
21
22
1.99
48436936--48437102
27
6.2
26
84
6
199
35
22
24
16
1.95
48436936--48437102
54
3.1
54
89
1
246
35
22
24
16
1.95
48443293--48443494
40
5.1
40
85
5
250
22
23
29
25
1.99
48452278--48452315
19
2.0
19
94
0
67
42
2
26
28
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48453830--48454057
47
4.8
46
74
12
187
25
21
31
21
1.98
48453834--48454057
94
2.4
95
84
2
292
25
21
31
21
1.98
48463157--48463291
58
2.3
57
82
5
155
45
2
2
49
1.29
48464921--48465167
88
2.8
90
83
4
288
31
17
10
39
1.84
48465217--48465375
9
17.2
9
69
17
78
64
3
3
28
1.26
48465269--48465349
19
4.3
19
77
13
87
66
3
1
28
1.16
48465247--48465362
10
12.1
10
73
15
77
61
2
2
33
1.23
48465230--48465407
57
3.1
57
77
8
159
61
3
3
30
1.32
48466033--48466141
56
1.9
56
84
0
146
51
12
13
22
1.75
48470531--48470564
17
2.0
17
88
0
50
35
8
20
35
1.84
48473960--48474004
12
3.7
12
88
5
63
75
4
4
15
1.12
48473960--48474004
13
3.5
13
93
3
74
75
4
4
15
1.12
48474049--48474117
30
2.3
30
80
11
88
75
2
11
10
1.15
48475003--48475041
15
2.4
15
87
12
51
66
2
20
10
1.33
48478381--48478458
6
13.5
6
75
12
74
15
1
6
76
1.04
48478381--48478457
17
4.5
17
81
15
72
15
1
6
76
1.05
48478398--48478458
24
2.7
23
87
5
88
14
1
4
78
0.99
48478398--48478482
12
6.9
12
69
21
52
18
1
4
75
1.04
48483409--48483476
33
2.1
33
94
0
118
36
22
14
26
1.93
48485566--48485605
20
2.0
20
90
0
62
25
27
32
15
1.95
48485610--48485682
21
3.5
21
100
0
146
16
24
42
16
1.88
48490251--48490285
16
2.1
17
89
5
54
45
0
11
42
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48492013--48492145
20
6.8
20
74
6
76
40
6
10
42
1.66
48491977--48492085
20
5.6
19
70
7
67
38
8
13
39
1.75
48491977--48492085
39
2.8
39
81
4
132
38
8
13
39
1.75
48496611--48496666
21
2.7
21
94
0
94
46
19
23
10
1.81
48497216--48497248
16
1.9
18
88
11
52
51
6
0
42
1.26
48498591--48498658
9
7.6
9
90
6
111
45
19
10
25
1.81
48498743--48498767
13
1.9
13
100
0
50
12
0
48
40
1.40
48498871--48498905
18
1.9
18
94
0
61
20
14
17
48
1.81
48504957--48505015
22
2.6
23
79
12
68
74
3
3
18
1.10
48504960--48504993
14
2.4
14
80
0
50
82
0
2
14
0.79
48505813--48505878
13
5.5
13
69
20
63
46
13
0
39
1.43
48505813--48505887
23
3.3
23
92
0
114
48
13
0
38
1.43
48506675--48506745
14
5.0
15
70
13
60
32
19
15
32
1.93
48506675--48506792
28
4.2
28
82
4
130
33
19
14
32
1.92
48506663--48506792
56
2.3
56
79
6
156
34
19
14
31
1.92
48507786--48507876
34
2.8
31
79
14
94
46
1
1
51
1.15
48507802--48507837
18
1.9
18
88
5
54
44
0
0
55
0.99
48507952--48507994
13
3.2
13
83
9
52
53
0
2
44
1.13
48509496--48509529
10
3.3
10
95
4
59
11
20
17
50
1.77
48516764--48516797
16
2.1
16
94
0
59
23
38
20
17
1.93
48524827--48524886
10
6.0
10
81
11
61
21
8
3
66
1.33
48525571--48525646
39
1.9
39
86
5
109
31
9
1
57
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48527055--48527180
40
3.2
40
90
1
200
27
26
22
23
1.99
48528595--48528622
13
2.2
13
100
0
56
57
14
0
28
1.38
48533767--48533840
31
2.4
31
83
0
103
45
8
8
37
1.63
48535112--48535186
31
2.4
32
84
4
100
34
6
9
49
1.61
48538480--48538531
25
2.1
25
88
0
77
40
15
7
36
1.76
48541732--48541790
23
2.6
23
88
0
73
15
37
20
27
1.92
48545124--48545193
15
4.7
14
75
10
68
58
0
1
40
1.07
48545133--48545211
29
2.7
29
88
5
106
58
1
1
39
1.14
48545143--48545194
15
3.5
15
81
5
70
61
0
1
36
1.07
48545124--48545211
15
5.9
14
72
16
61
59
1
1
38
1.13
48547961--48547997
15
2.5
15
90
0
56
29
56
5
8
1.51
48554471--48555534
158
6.7
157
90
3
1525
36
1
19
42
1.60
48555351--48555399
23
2.1
23
85
7
64
26
0
20
53
1.46
48555560--48556117
125
4.5
126
92
0
888
37
15
19
27
1.92
48555560--48556117
251
2.2
251
91
0
886
37
15
19
27
1.92
48559134--48559165
9
3.4
9
91
8
55
62
0
0
37
0.95
48560360--48560392
14
2.4
14
94
0
57
60
9
0
30
1.27
48570866--48570930
23
2.7
24
81
13
71
36
6
1
55
1.34
48573154--48573211
30
1.9
30
85
0
80
32
8
25
32
1.86
48573554--48573768
46
4.6
45
76
10
168
26
19
29
24
1.98
48574089--48574133
21
2.1
21
100
0
90
24
20
8
46
1.78
48580816--48580873
30
1.9
30
85
0
80
34
12
24
29
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48599505--48599531
3
9.0
3
100
0
54
66
0
0
33
0.92
48599523--48599561
19
2.0
20
90
5
62
53
2
0
43
1.14
48599932--48599993
30
2.1
27
85
11
79
45
1
1
51
1.20
48599967--48600007
20
2.0
21
85
4
57
46
0
0
53
1.00
48602438--48602484
21
2.2
22
84
3
60
51
4
0
44
1.21
48602696--48602885
95
2.0
95
86
2
265
34
11
12
42
1.77
48603106--48603147
19
2.2
19
86
0
57
50
0
0
50
1.00
48603403--48603452
25
2.0
25
92
3
84
60
6
8
26
1.48
48613749--48613796
19
2.4
20
77
19
55
6
12
8
72
1.26
48621468--48621515
3
16.0
3
82
0
60
62
2
4
31
1.26
48621445--48621511
12
5.5
12
74
10
55
62
7
2
26
1.36
48621600--48621644
20
2.2
21
84
11
58
62
2
4
31
1.27
48623528--48624043
44
11.8
44
73
7
302
29
20
17
31
1.96
48623538--48623952
133
3.2
133
78
5
400
30
20
17
31
1.96
48623825--48624043
45
4.9
44
79
5
217
31
22
15
30
1.95
48623824--48624026
89
2.3
89
87
5
277
31
24
14
30
1.94
48627538--48627581
19
2.3
19
81
14
54
61
4
0
34
1.16
48627518--48627584
20
3.5
20
80
8
68
58
2
2
35
1.29
48627518--48627584
10
6.8
10
78
14
61
58
2
2
35
1.29
48627984--48628184
9
21.7
9
71
15
99
35
2
2
58
1.28
48627984--48628054
28
2.5
28
84
6
90
30
2
1
64
1.16
48627984--48628196
19
11.4
19
68
19
85
35
3
2
58
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48628107--48628183
37
2.1
38
85
7
104
29
1
3
64
1.19
48629899--48630017
19
6.2
19
79
1
112
31
27
21
19
1.97
48629899--48630017
38
3.1
38
82
1
130
31
27
21
19
1.97
48632575--48632632
27
2.1
27
100
0
116
51
10
10
27
1.68
48633038--48633062
6
4.2
6
100
0
50
32
52
0
16
1.44
48637271--48637383
20
5.4
20
77
9
111
18
11
16
53
1.73
48637271--48637372
42
2.4
43
80
8
120
17
9
17
54
1.69
48651889--48651937
24
2.0
25
84
8
64
53
6
0
40
1.26
48656259--48656289
6
5.0
6
96
4
53
0
16
0
83
0.64
48657813--48657874
28
2.2
28
82
5
72
35
4
8
51
1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290