genome.fa.s7.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  116  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36102879--36103049	93	1.8	93	91	0	279	28	28	21	22	1.99
36103469--36103528	30	2.0	30	86	0	84	30	25	6	38	1.81
36109292--36109356	28	2.3	28	91	0	103	32	27	7	32	1.85
36109462--36109552	28	3.2	28	85	4	121	23	24	20	31	1.98
36110006--36110046	18	2.3	18	86	0	55	24	2	4	68	1.22
36111679--36111728	15	2.9	17	72	21	59	46	0	2	52	1.12
36117598--36117823	48	4.7	48	82	0	281	27	18	27	26	1.98
36117586--36117822	96	2.5	96	92	1	377	27	17	27	27	1.98
36125294--36125498	27	7.6	27	86	3	259	26	15	27	30	1.96
36125295--36125498	109	1.9	108	89	3	320	26	15	27	30	1.96
36133258--36133462	27	7.6	27	86	3	259	26	15	27	30	1.96
36133259--36133462	109	1.9	108	89	3	320	26	15	27	30	1.96
36135820--36136047	40	5.7	40	91	0	350	29	28	21	20	1.98
36143276--36143455	48	3.8	47	73	14	145	27	30	17	25	1.98
36143470--36143637	46	3.6	46	75	6	142	23	27	19	29	1.98
36150834--36151064	48	4.8	48	68	11	159	25	29	18	26	1.98
36150943--36151206	46	5.6	47	73	15	197	23	31	18	26	1.97
36153113--36153180	22	3.1	21	81	10	75	42	1	0	55	1.08
36153179--36153253	22	3.4	21	82	10	87	42	0	1	56	1.08
36153168--36153253	45	1.9	45	86	6	122	46	0	1	52	1.08
36153196--36153253	23	2.6	22	89	10	91	44	0	0	55	0.99
36153196--36153253	22	2.6	23	91	8	93	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36153206--36153266	14	4.6	14	70	27	53	44	0	1	54	1.10
36153228--36153269	14	3.0	14	86	10	59	42	0	2	54	1.13
36153408--36153473	20	3.3	20	80	15	84	56	4	0	39	1.20
36153445--36153480	16	2.2	17	90	5	56	63	0	0	36	0.94
36153521--36153579	21	2.8	21	77	15	59	52	0	0	47	1.00
36153548--36153586	13	2.9	13	88	3	60	56	0	0	43	0.99
36154981--36155013	16	2.2	15	89	10	50	39	0	3	57	1.14
36155054--36155193	43	3.3	43	82	7	185	24	17	30	27	1.97
36155010--36155195	86	2.2	85	88	2	266	23	16	29	31	1.96
36159026--36159068	22	2.0	22	95	0	77	39	4	11	44	1.62
36164068--36164136	18	4.1	17	75	12	54	20	2	2	73	1.09
36168183--36168246	3	22.7	3	75	12	55	25	3	1	70	1.11
36169847--36169927	26	3.3	26	79	16	75	19	8	3	67	1.32
36174400--36174584	40	4.6	40	94	1	309	27	28	22	21	1.99
36176725--36176767	22	2.0	22	95	0	77	39	4	11	44	1.62
36176742--36176802	30	2.0	30	100	0	122	42	3	18	36	1.66
36181635--36181780	68	2.2	64	81	10	161	26	27	15	30	1.96
36182245--36182305	30	2.0	30	83	0	77	31	22	8	37	1.84
36186181--36186210	11	2.7	11	100	0	60	26	0	0	73	0.84
36187346--36187565	46	4.6	51	75	15	179	28	18	30	22	1.97
36187435--36187616	99	1.9	95	82	10	224	28	19	30	21	1.98
36190872--36191416	140	3.9	140	82	3	580	32	24	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36190872--36191354	70	6.9	69	78	4	439	32	25	16	25	1.96
36190884--36191416	70	7.6	70	77	5	380	32	24	16	25	1.96
36196666--36196701	19	1.9	18	88	5	54	83	0	13	2	0.76
36197306--36197347	19	2.2	20	86	4	59	40	11	23	23	1.88
36198324--36198352	14	2.1	14	100	0	58	20	6	20	51	1.70
36205849--36205891	17	2.5	17	88	11	61	16	0	0	83	0.64
36205849--36205886	12	3.1	13	88	7	53	15	0	0	84	0.63
36219624--36219869	49	5.0	49	82	3	294	30	27	17	24	1.97
36219638--36219869	100	2.3	98	87	4	331	30	27	17	24	1.97
36220517--36220576	30	2.0	30	83	6	77	30	25	8	36	1.85
36224216--36224315	42	2.4	42	87	0	146	20	22	32	26	1.98
36228418--36228460	19	2.2	20	91	4	70	48	0	6	44	1.29
36228684--36228719	18	2.0	18	100	0	72	16	5	16	61	1.53
36231390--36231489	42	2.3	43	86	1	139	34	20	20	26	1.96
36231783--36231830	21	2.3	21	96	0	87	0	58	20	20	1.40
36235509--36235534	12	2.2	12	100	0	52	30	26	7	34	1.85
36236865--36236945	40	2.0	40	95	0	144	25	27	9	37	1.88
36237407--36237534	9	13.6	9	75	9	112	31	1	21	46	1.61
36237407--36237534	57	2.2	57	84	0	166	31	1	21	46	1.61
36238223--36238251	10	2.9	10	100	0	58	31	20	0	48	1.50
36238441--36239506	183	5.8	183	96	0	1970	42	14	15	27	1.85
36238441--36239506	367	2.9	366	96	0	1979	42	14	15	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36240515--36240814	151	2.0	148	95	1	537	35	15	14	35	1.88
36243672--36243712	14	2.9	14	88	0	55	43	46	0	9	1.36
36243647--36243714	35	1.9	35	87	0	100	45	39	0	14	1.45
36243963--36244035	14	5.4	14	72	18	64	45	23	1	30	1.61
36244206--36244299	41	2.3	40	92	1	152	23	25	19	31	1.98
36244197--36244363	40	4.1	40	82	3	165	19	20	20	38	1.94
36246202--36246244	22	2.0	22	90	0	68	30	4	11	53	1.57
36252004--36252055	18	3.0	18	86	5	72	36	1	13	48	1.54
36256016--36256299	38	7.3	39	88	5	355	23	20	27	28	1.99
36256020--36256295	77	3.6	76	84	7	322	23	19	28	28	1.98
36264490--36264780	40	7.3	40	90	2	372	23	19	27	30	1.98
36266080--36266230	74	2.0	75	98	1	295	27	21	24	26	2.00
36267498--36267638	65	2.2	65	83	2	176	26	26	25	21	1.99
36268739--36268848	44	2.5	44	82	7	127	35	24	17	22	1.95
36280898--36281002	7	13.9	7	71	14	57	71	1	1	24	1.06
36280885--36280960	31	2.6	28	80	13	91	72	1	2	23	1.05
36280894--36280960	14	4.6	14	77	12	73	74	1	1	22	0.98
36282965--36283094	55	2.4	56	75	8	140	16	25	28	29	1.97
36291198--36291468	49	5.6	49	72	11	211	22	28	20	28	1.99
36291243--36291413	93	1.8	92	83	7	229	22	28	20	28	1.98
36291198--36291462	142	1.9	142	88	3	408	22	28	20	28	1.99
36291145--36291474	142	2.3	142	83	6	405	23	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36297436--36297496	30	2.0	30	87	0	86	31	22	6	39	1.80
36300451--36300522	25	3.2	25	59	25	59	36	8	23	31	1.85
36300454--36300540	43	2.0	43	100	0	174	37	6	20	34	1.80
36325655--36325831	50	3.6	51	80	11	167	22	32	20	25	1.98
36325697--36325832	50	2.7	51	85	7	174	22	31	20	25	1.98
36329446--36329566	61	2.0	61	82	6	149	50	5	2	41	1.40
36332624--36332663	21	1.9	21	85	10	55	52	10	0	37	1.35
36340731--36340782	12	4.2	12	76	13	52	53	0	1	44	1.11
36340739--36340825	11	8.1	11	68	24	53	54	1	2	42	1.20
36340740--36340838	48	2.0	51	86	11	143	53	3	2	41	1.28
36340700--36340841	68	2.0	71	80	8	157	52	3	2	40	1.33
36342351--36342380	16	1.9	15	93	6	51	53	20	20	6	1.67
36342620--36342683	28	2.3	28	91	5	103	32	29	7	29	1.86
36342789--36342843	28	2.0	28	89	7	85	23	23	21	30	1.99
36353092--36353161	28	2.5	28	79	9	81	28	12	25	32	1.93
36360372--36360435	28	2.3	28	91	5	103	32	29	7	29	1.86
36360551--36360630	27	2.9	28	83	5	108	20	25	22	32	1.98
36360551--36360641	27	3.2	28	81	4	94	20	26	20	31	1.98
36360551--36360655	55	1.9	56	82	5	133	19	24	20	35	1.96
36365654--36365813	80	2.0	80	98	0	311	41	22	8	28	1.82
36371848--36371939	43	2.1	43	91	0	148	15	28	30	26	1.96
36372910--36373121	46	4.6	46	78	8	198	26	19	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36372910--36373165	46	5.6	46	77	9	139	26	18	28	25	1.98
36386531--36386598	29	2.4	29	80	7	77	32	25	20	22	1.98
36387954--36388266	46	6.8	46	90	2	423	21	25	15	38	1.92
36390413--36390464	11	4.7	11	76	9	52	63	3	0	32	1.12
36392515--36392622	41	2.6	40	77	11	110	23	19	25	31	1.98
36395099--36395199	29	3.5	29	89	1	141	29	27	14	27	1.96
36402275--36402314	20	2.0	20	85	9	55	75	0	2	22	0.93
36419126--36419434	47	6.6	46	75	16	246	29	19	28	22	1.98
36421256--36421338	43	1.9	43	95	0	148	20	20	30	28	1.98
36424115--36424193	38	2.1	38	95	0	140	39	35	6	18	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290