Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  177  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57419449--57419549
37
2.7
37
95
0
175
22
32
20
23
1.98
57419692--57419789
48
2.0
48
90
0
151
28
29
8
33
1.86
57425149--57425260
27
4.2
26
83
7
134
16
24
22
36
1.94
57425153--57425259
54
2.0
54
88
3
162
17
24
20
37
1.94
57428560--57428695
70
1.9
70
95
0
245
27
25
11
35
1.90
57430590--57430634
21
2.3
18
85
11
54
17
26
0
55
1.42
57430743--57430774
15
2.1
16
94
5
57
6
21
0
71
1.07
57431628--57431670
17
2.5
17
85
11
52
16
11
4
67
1.38
57431730--57431786
13
4.7
12
85
8
71
10
1
5
82
0.90
57431730--57431786
25
2.3
24
90
3
87
10
1
5
82
0.90
57432930--57433066
70
2.0
70
95
0
247
27
25
12
35
1.92
57434039--57434078
20
2.0
20
85
5
53
20
10
27
42
1.83
57436028--57436058
14
2.2
14
94
0
53
9
29
3
58
1.46
57437757--57437908
27
5.8
27
75
11
120
39
21
10
28
1.86
57437748--57437920
54
3.3
53
76
8
174
39
20
9
29
1.85
57437806--57438084
27
10.3
27
77
11
79
35
20
7
36
1.80
57437900--57438198
27
11.1
27
86
1
393
31
20
6
41
1.78
57442851--57442887
16
2.2
17
90
4
58
83
0
10
5
0.79
57446517--57446613
30
3.2
30
76
2
106
27
16
27
27
1.97
57448716--57448798
30
2.7
30
81
9
89
13
21
1
63
1.35
57448749--57448804
18
3.1
18
76
5
51
7
19
1
71
1.18
57448774--57448798
12
2.1
12
100
0
50
8
16
0
76
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57448867--57448923
5
11.0
5
75
20
55
3
17
1
77
1.00
57448867--57448923
16
3.7
14
82
15
60
3
17
1
77
1.00
57448867--57448934
21
3.2
21
76
15
61
2
17
2
76
1.04
57449844--57449882
18
2.2
17
90
4
60
12
7
2
76
1.09
57449844--57449882
17
2.3
17
83
12
53
12
7
2
76
1.09
57449861--57449904
12
3.6
12
84
3
52
15
9
4
70
1.30
57451624--57451722
30
3.3
30
75
8
103
28
16
28
27
1.97
57453265--57453289
13
1.9
13
100
0
50
64
8
0
28
1.22
57453514--57453562
21
2.4
21
89
3
73
40
20
22
16
1.91
57457218--57457270
23
2.4
22
76
20
56
9
18
1
69
1.25
57462079--57462132
27
2.0
27
100
0
108
18
25
18
37
1.94
57464182--57464249
21
3.2
20
80
12
66
76
4
17
1
1.03
57464193--57464249
5
11.0
5
77
17
55
77
3
17
1
1.00
57464193--57464249
16
3.7
14
80
17
60
77
3
17
1
1.00
57464319--57464400
30
2.7
31
81
5
105
63
2
23
10
1.39
57466611--57466709
30
3.3
30
70
8
85
27
28
16
28
1.97
57468160--57468186
10
2.7
10
100
0
54
14
0
0
85
0.61
57474551--57474592
13
3.1
13
86
10
57
71
2
21
4
1.16
57474564--57474607
17
2.9
15
81
15
54
70
4
20
4
1.23
57474701--57474743
12
3.6
12
93
0
68
62
0
23
13
1.31
57476421--57476475
20
2.8
20
88
0
83
29
16
29
25
1.97
57477763--57477787
13
1.9
13
100
0
50
64
8
0
28
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57480019--57480155
68
2.0
68
85
0
184
24
18
16
40
1.90
57482490--57482529
18
2.3
17
91
4
62
45
5
10
40
1.60
57485974--57485998
13
1.9
13
100
0
50
64
8
0
28
1.22
57488326--57488389
30
2.2
29
83
8
76
14
25
1
59
1.44
57488380--57488420
19
2.1
20
90
4
66
2
24
2
70
1.11
57490577--57490601
13
1.9
13
100
0
50
64
8
0
28
1.22
57491158--57491254
30
3.2
30
70
8
81
28
28
13
28
1.94
57493509--57493605
30
3.2
31
73
5
101
27
28
15
27
1.96
57495425--57495480
15
3.6
14
84
15
67
75
1
19
3
1.05
57495549--57495630
30
2.7
31
83
5
105
67
1
20
10
1.28
57497557--57497604
15
3.3
15
73
5
53
29
0
27
43
1.55
57497551--57497610
29
2.1
29
90
0
93
30
0
28
41
1.56
57498588--57498632
14
3.3
14
78
6
56
48
15
0
35
1.45
57500018--57500200
67
2.7
66
89
6
244
33
14
28
23
1.94
57500044--57500200
67
2.3
68
95
1
280
31
14
29
24
1.95
57507511--57507728
68
3.3
66
83
9
232
34
15
27
22
1.95
57507571--57507784
68
3.3
63
82
9
195
32
16
28
22
1.95
57509637--57509663
10
2.7
10
100
0
54
18
11
29
40
1.85
57509996--57510049
20
2.7
20
82
0
63
24
20
18
37
1.94
57509996--57510069
30
2.5
30
86
8
98
21
20
18
39
1.93
57509996--57510060
20
3.2
20
71
16
53
23
21
16
38
1.93
57511710--57511748
11
3.7
10
87
12
60
84
0
12
2
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57511710--57511754
22
2.1
21
91
4
72
82
0
13
4
0.82
57512765--57512859
6
15.7
6
68
9
50
70
3
18
7
1.24
57512765--57512815
18
2.9
18
82
2
68
72
5
15
5
1.24
57512819--57512857
14
2.9
14
85
14
55
71
0
20
7
1.10
57512874--57512936
33
1.9
33
84
12
85
53
6
26
12
1.62
57514710--57514763
20
2.7
20
82
0
63
24
20
18
37
1.94
57514710--57514783
30
2.5
30
86
8
98
21
20
18
39
1.93
57514710--57514774
20
3.2
20
71
16
53
23
21
16
38
1.93
57519528--57519579
23
2.3
22
75
21
54
9
23
1
65
1.32
57532962--57533058
30
3.2
31
73
5
101
27
28
15
27
1.96
57533543--57533567
13
1.9
13
100
0
50
16
32
16
36
1.90
57539481--57539534
11
4.6
11
84
11
63
74
5
3
16
1.16
57539481--57539534
25
2.2
24
83
6
65
74
5
3
16
1.16
57540449--57540502
11
5.1
11
70
17
51
77
1
16
3
1.00
57540457--57540502
16
3.1
14
82
14
56
76
2
17
4
1.06
57540446--57540502
21
2.8
20
81
7
69
77
3
15
3
1.05
57542162--57542239
21
3.4
23
74
8
70
26
2
30
39
1.70
57542198--57542264
21
3.1
21
82
4
80
29
2
32
34
1.73
57546509--57546564
17
3.2
17
74
18
51
8
12
3
75
1.17
57548703--57548729
1
27.0
1
100
0
54
0
0
0
100
0.00
57548772--57548813
14
3.0
14
86
13
68
14
4
0
80
0.86
57548775--57548814
15
2.7
15
96
3
73
10
2
0
87
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57548775--57548834
17
3.8
16
86
6
86
11
3
1
83
0.84
57549095--57549172
21
3.4
23
74
8
70
26
2
30
39
1.70
57549131--57549197
21
3.1
21
82
4
80
29
2
32
34
1.73
57554636--57554680
21
2.1
21
87
4
63
33
2
4
60
1.29
57554703--57554728
13
2.0
13
100
0
52
30
0
7
61
1.24
57557094--57557135
17
2.5
17
88
11
61
73
0
19
7
1.05
57560189--57560220
15
2.1
16
94
5
57
31
0
0
68
0.90
57565169--57565345
40
4.4
40
82
4
207
24
21
27
27
1.99
57565169--57565345
80
2.2
80
87
5
243
24
21
27
27
1.99
57569126--57569173
20
2.4
20
78
0
60
31
14
29
25
1.95
57571917--57571971
20
2.8
20
88
0
83
29
16
29
25
1.97
57572962--57573058
42
2.3
42
89
1
142
56
4
23
15
1.56
57573068--57573099
6
5.3
6
96
0
55
34
0
46
18
1.49
57573091--57573160
18
3.9
18
69
0
50
55
0
28
15
1.41
57573085--57573135
24
2.1
24
88
0
75
50
0
31
17
1.46
57573092--57573156
24
2.7
24
78
0
58
55
0
29
15
1.41
57573053--57573150
36
2.7
36
72
0
97
53
0
31
15
1.42
57573153--57573191
18
2.1
19
85
4
53
66
2
23
7
1.30
57577262--57577299
18
2.1
19
85
9
53
34
2
31
31
1.72
57578176--57578207
15
2.1
16
94
5
57
68
0
0
31
0.90
57578426--57578473
21
2.3
21
85
3
62
45
20
18
14
1.85
57579546--57579597
21
2.4
22
87
6
70
5
21
0
73
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57581620--57581680
30
2.0
30
100
0
122
44
19
19
16
1.87
57586449--57586624
46
3.8
46
79
12
216
20
21
29
28
1.98
57586446--57586617
93
1.8
93
96
0
317
20
21
29
27
1.98
57589184--57589228
10
4.4
10
83
5
54
48
22
15
13
1.79
57589184--57589231
21
2.3
20
85
3
60
50
22
14
12
1.77
57590560--57590785
114
2.0
114
83
3
285
29
23
13
33
1.93
57594521--57594696
46
3.8
46
76
12
171
31
28
19
21
1.97
57594528--57594697
93
1.8
93
89
0
268
30
28
19
21
1.98
57598327--57598386
30
2.0
30
90
0
93
28
25
8
38
1.84
57603627--57603692
33
2.0
34
85
8
91
27
24
16
31
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290