genome.fa.s7.2.7.7.80.10.50.1000.244.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  244  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79266308--79266341	18	1.9	18	88	5	52	14	0	23	61	1.33
79273713--79273843	68	1.9	68	98	0	253	35	23	14	26	1.93
79281613--79281660	24	2.0	24	100	0	96	25	25	33	16	1.96
79281621--79281672	24	2.2	24	85	0	68	23	23	36	17	1.95
79282305--79282347	21	2.0	21	83	16	54	37	4	11	46	1.61
79282817--79282964	40	3.7	40	85	0	170	22	14	26	35	1.93
79286499--79286548	23	2.2	23	81	0	55	58	0	4	38	1.17
79291716--79291762	25	1.9	24	91	4	76	68	6	0	25	1.13
79296062--79296094	13	2.5	13	100	0	66	42	33	6	18	1.75
79302129--79302227	36	2.8	36	68	11	94	29	18	18	34	1.94
79305047--79305174	39	3.3	39	89	0	202	31	21	26	21	1.98
79305046--79305200	78	2.0	76	83	5	195	30	21	26	20	1.98
79306844--79306869	13	2.0	13	100	0	52	69	7	7	15	1.35
79308026--79308059	11	3.0	11	87	8	50	41	26	0	32	1.56
79309660--79309795	51	2.7	51	80	0	173	40	5	13	40	1.68
79311480--79311769	96	3.0	96	92	0	463	36	18	33	11	1.87
79313382--79313517	51	2.7	51	80	0	173	41	5	12	40	1.67
79312465--79313876	709	2.0	707	98	0	2716	27	17	22	31	1.97
79314544--79314599	27	2.1	27	100	0	112	37	7	14	41	1.73
79322831--79322871	15	2.8	14	85	10	55	51	4	4	39	1.45
79339277--79339310	12	3.0	11	87	8	50	26	5	0	67	1.13
79339274--79339314	15	2.6	16	88	11	59	26	4	0	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79341355--79341528	46	3.8	45	75	13	174	30	16	25	27	1.97
79341356--79341567	94	2.3	92	81	4	246	31	16	25	25	1.97
79341587--79341704	49	2.4	49	85	2	157	27	18	28	24	1.98
79346578--79347962	696	2.0	696	98	0	2662	29	16	23	30	1.96
79349684--79349851	48	3.5	48	78	3	169	29	18	27	23	1.98
79349681--79349851	94	1.8	94	87	0	252	29	18	28	23	1.97
79349642--79349808	46	3.6	46	74	9	135	29	17	28	24	1.97
79350967--79350996	11	2.7	11	94	0	51	20	0	0	80	0.72
79376772--79376917	25	6.0	24	88	5	188	28	22	19	28	1.98
79376763--79376915	47	3.1	49	84	8	186	28	22	18	30	1.98
79376967--79377005	20	2.0	20	100	0	78	30	20	12	35	1.90
79376968--79377012	20	2.2	20	92	0	72	31	22	13	33	1.92
79381914--79382059	25	6.0	24	89	5	188	27	22	21	28	1.99
79382116--79382172	9	5.9	9	73	15	51	35	21	8	35	1.84
79382108--79382174	20	3.3	20	95	0	125	32	19	11	35	1.88
79382108--79382163	11	5.5	11	71	16	57	32	19	12	35	1.89
79382211--79382258	25	1.9	25	91	0	78	25	14	25	35	1.94
79384083--79384215	66	2.0	66	100	0	266	33	15	22	28	1.95
79389786--79389826	20	2.0	20	100	0	82	46	14	14	24	1.82
79390511--79390539	10	3.0	10	95	5	51	51	0	10	37	1.36
79390785--79390909	37	3.4	36	77	7	119	19	13	29	37	1.90
79391309--79391349	18	2.3	18	100	0	82	46	4	17	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79391892--79391958	33	2.0	33	100	0	134	17	29	8	43	1.80
79395805--79395833	15	2.0	15	93	6	51	55	20	13	10	1.68
79396512--79396540	15	1.9	15	100	0	58	55	13	17	13	1.70
79402015--79402074	13	4.6	13	78	14	52	35	6	20	38	1.79
79404106--79404365	72	3.7	72	89	2	366	55	13	5	26	1.59
79404790--79404859	18	3.9	18	92	0	113	38	12	14	34	1.84
79406287--79406326	10	3.8	10	86	6	53	22	17	0	60	1.37
79410548--79410609	31	2.0	31	93	0	106	38	19	25	16	1.92
79415776--79415834	28	2.1	28	96	0	109	37	18	10	33	1.85
79416946--79417247	45	6.8	45	85	3	398	28	18	14	39	1.90
79416952--79417247	89	3.3	90	87	4	429	27	18	14	39	1.90
79416946--79417247	133	2.3	134	87	6	443	28	18	14	39	1.90
79427705--79427739	3	11.7	3	93	0	61	65	0	2	31	1.07
79431223--79431247	13	1.9	13	100	0	50	88	0	0	12	0.53
79436539--79436605	34	2.0	34	85	11	93	43	1	11	43	1.50
79436568--79436639	22	3.0	24	84	10	94	37	0	18	44	1.50
79436547--79436717	88	1.9	91	87	3	258	38	0	17	43	1.54
79436611--79436816	34	6.5	33	73	20	176	36	1	18	42	1.60
79436656--79436717	25	2.5	25	82	10	74	35	1	19	43	1.61
79436631--79436815	59	3.1	59	85	11	250	36	1	18	43	1.60
79436563--79436784	88	2.5	85	79	14	229	37	0	18	43	1.56
79436611--79436860	64	3.9	64	82	10	282	35	1	20	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79436924--79437424	126	4.0	126	88	1	718	37	16	17	28	1.92
79436924--79437424	253	2.0	252	88	3	749	37	16	17	28	1.92
79440880--79440917	18	2.1	18	90	0	58	42	10	23	23	1.85
79442498--79442565	19	3.6	18	69	20	57	63	4	1	30	1.23
79442496--79442571	39	1.9	39	97	0	143	64	6	1	27	1.26
79442726--79442766	21	2.0	21	85	0	55	46	2	24	26	1.65
79444315--79444429	54	2.1	54	82	6	135	36	12	18	33	1.88
79444339--79444521	94	1.9	92	81	8	217	39	15	15	28	1.89
79444433--79444851	54	7.8	53	78	2	358	40	15	16	26	1.89
79444433--79444851	108	3.9	108	81	3	407	40	15	16	26	1.89
79444461--79444850	162	2.4	161	82	0	492	41	14	16	26	1.88
79450172--79450211	21	2.0	21	90	5	64	52	0	0	47	1.00
79450914--79450962	21	2.3	21	85	0	62	46	22	2	28	1.63
79452137--79452412	90	3.1	90	84	2	313	31	14	26	28	1.94
79452466--79452525	19	3.4	19	63	32	51	45	13	11	30	1.79
79452467--79452558	34	2.7	33	81	9	89	43	13	11	31	1.80
79458733--79458769	18	2.0	19	89	5	58	67	0	10	21	1.21
79459512--79459546	14	2.4	15	85	9	54	42	0	8	48	1.33
79460400--79461445	522	2.0	522	88	1	1560	35	19	12	31	1.90
79464135--79464168	17	2.0	17	100	0	68	47	17	11	23	1.81
79469262--79469486	79	2.8	80	80	11	246	26	21	26	25	1.99
79469262--79469486	40	5.7	40	84	7	239	26	21	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79469262--79469486	119	1.9	120	81	9	282	26	21	26	25	1.99
79469315--79469519	79	2.6	79	79	10	181	28	20	26	24	1.99
79474749--79474795	24	2.0	24	100	0	94	36	17	17	29	1.92
79480998--79481024	6	4.5	6	100	0	54	55	14	14	14	1.70
79485258--79485298	21	2.0	21	85	9	57	31	19	31	17	1.95
79488148--79488253	53	2.0	53	90	0	167	36	16	15	32	1.89
79492893--79492952	24	2.5	24	91	5	95	48	0	30	21	1.51
79493876--79494014	37	3.8	37	97	0	242	25	30	18	24	1.98
79494200--79494964	49	16.0	42	93	2	504	29	29	8	32	1.87
79494133--79494976	47	17.6	47	92	2	1274	29	29	8	33	1.87
79494133--79494976	96	8.8	96	92	2	1358	29	29	8	33	1.87
79498868--79499087	78	2.8	79	80	8	270	26	26	21	25	2.00
79498868--79499087	38	5.6	39	83	6	241	26	26	21	25	2.00
79506750--79506918	39	4.3	39	90	3	234	28	27	20	23	1.99
79506750--79506934	79	2.3	78	83	7	248	28	26	20	24	1.99
79509333--79509825	39	12.6	39	88	8	700	25	28	21	23	1.99
79511712--79511872	39	4.3	39	84	9	185	28	27	20	22	1.99
79511737--79511878	39	3.8	38	87	10	195	29	28	18	23	1.98
79511712--79511888	73	2.3	76	80	12	213	28	27	20	24	1.99
79514299--79514791	40	12.6	40	91	4	796	25	29	22	22	1.99
79514299--79514791	119	4.2	120	91	5	796	25	29	22	22	1.99
79516059--79516195	37	3.7	37	95	0	231	25	31	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79516314--79517106	47	16.6	47	94	1	1253	29	29	8	32	1.87
79516314--79517106	96	8.3	96	94	1	1301	29	29	8	32	1.87
79516626--79516701	22	3.3	22	66	16	64	26	30	10	32	1.90
79527386--79527441	27	2.1	27	100	0	112	32	21	12	33	1.91
79530000--79530040	15	2.8	15	88	3	57	58	14	14	12	1.63
79543439--79543564	43	2.9	43	82	6	139	31	26	17	23	1.97
79548954--79549267	47	6.7	47	96	0	556	29	30	8	31	1.86
79548954--79549435	141	3.5	141	89	8	767	29	29	7	32	1.86
79549237--79549291	16	3.4	16	77	22	69	36	27	0	36	1.57
79549234--79549300	8	8.1	8	72	27	52	35	26	0	37	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290