genome.fa.s7.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  32  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10440516--10440555	3	13.0	3	84	5	53	0	32	2	65	1.06
10445137--10445268	70	1.9	70	81	6	160	36	28	6	29	1.81
10446252--10446331	33	2.4	33	80	0	88	30	6	41	22	1.78
10446448--10446598	51	3.0	51	91	0	221	27	9	27	34	1.89
10448559--10448588	14	2.1	14	100	0	60	30	0	0	70	0.88
10449342--10449386	22	2.0	22	91	0	72	40	11	13	35	1.80
10449774--10449798	12	2.1	12	100	0	50	36	32	8	24	1.84
10450352--10450395	23	1.9	23	90	0	70	25	13	20	40	1.89
10453143--10453175	13	2.5	13	95	0	57	48	18	0	33	1.48
10454103--10454217	27	4.3	27	89	5	162	36	23	24	15	1.94
10455835--10455918	26	3.2	26	96	0	150	36	23	4	34	1.76
10456263--10456396	40	3.3	40	84	0	151	38	17	1	42	1.58
10457614--10457665	21	2.5	22	73	17	56	36	3	1	57	1.28
10459999--10460028	12	2.5	12	94	0	51	53	0	10	36	1.35
10467792--10467834	17	2.5	17	88	11	61	25	6	0	67	1.15
10467760--10467845	20	4.6	18	73	11	66	32	8	0	59	1.27
10470783--10470813	16	1.9	16	93	0	53	35	6	3	54	1.42
10482057--10482296	45	5.6	45	67	19	138	31	20	20	27	1.98
10482268--10482383	44	2.7	43	82	4	135	28	24	23	24	2.00
10484570--10484600	16	1.9	16	93	0	53	35	6	3	54	1.42
10502028--10502058	16	1.9	16	93	0	53	58	0	0	41	0.98
10502272--10502412	63	2.3	63	86	1	194	34	35	5	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507493--10507582	47	1.9	47	84	4	119	30	26	7	35	1.85
10515222--10515273	26	2.0	26	88	0	77	44	1	3	50	1.31
10516363--10516394	16	2.0	16	100	0	64	37	18	0	43	1.51
10517236--10517342	10	11.4	9	71	20	69	65	1	1	30	1.14
10517248--10517342	10	9.7	10	74	12	72	64	2	2	31	1.17
10517232--10517343	19	5.9	18	76	13	84	65	1	1	31	1.13
10517267--10517342	29	2.5	32	83	12	99	63	1	1	34	1.11
10517528--10517582	20	2.8	19	74	17	51	23	9	1	65	1.31
10517527--10517660	19	6.9	19	69	17	71	29	8	2	59	1.40
10518800--10518851	21	2.4	23	75	18	58	38	13	7	40	1.73
10527083--10527140	8	7.1	8	90	2	89	25	0	3	70	1.03
10531785--10531869	42	2.0	42	100	0	170	45	9	7	37	1.64
10533726--10533766	10	4.1	10	84	9	57	68	0	0	31	0.90
10537014--10537199	53	3.7	48	80	13	137	28	27	17	25	1.98
10537052--10537199	53	2.8	53	89	2	208	29	27	16	26	1.97
10542386--10542479	48	2.0	48	97	0	179	36	13	10	39	1.80
10544020--10544088	32	2.2	32	82	7	88	31	11	17	39	1.85
10545909--10545951	21	2.0	21	86	4	59	53	0	0	46	1.00
10546544--10546582	14	2.8	14	92	0	60	30	20	10	38	1.86
10547056--10547086	11	2.8	11	95	0	53	64	0	3	32	1.09
10547322--10547360	19	2.2	19	86	9	55	41	2	0	56	1.13
10547364--10547397	16	2.1	17	88	5	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10547820--10547892	25	3.0	25	86	6	87	71	4	10	13	1.28
10550981--10551023	20	2.0	22	86	8	63	48	0	20	30	1.50
10551718--10551811	33	2.9	33	87	4	120	38	11	19	30	1.87
10551757--10551912	33	4.8	33	79	3	127	32	14	24	29	1.94
10552506--10552620	30	3.8	30	86	2	135	27	46	4	20	1.69
10553174--10553333	25	6.1	25	69	16	74	32	6	3	56	1.43
10553172--10553277	27	4.0	27	70	18	78	33	6	1	58	1.35
10553184--10553239	14	3.7	15	80	17	55	32	3	0	64	1.11
10553184--10553237	17	3.4	16	80	16	51	33	3	0	62	1.12
10553254--10553344	23	3.9	24	75	11	73	32	6	5	54	1.49
10553461--10553509	16	3.0	17	79	8	57	30	2	2	65	1.15
10557320--10557385	10	6.4	10	77	17	55	83	6	7	3	0.90
10557331--10557386	10	5.3	10	76	19	60	83	7	5	3	0.88
10559503--10559785	75	3.7	76	88	3	410	32	18	18	31	1.94
10559503--10559785	151	1.9	151	88	2	435	32	18	18	31	1.94
10559916--10559957	19	2.2	19	95	0	75	16	26	28	28	1.97
10560200--10560234	14	2.5	14	90	0	52	14	17	5	62	1.49
10560125--10561075	89	10.7	87	74	12	630	26	16	19	36	1.94
10560072--10560895	268	3.1	251	69	13	644	26	17	20	35	1.95
10560379--10560426	14	3.4	14	91	0	78	18	14	6	60	1.55
10560290--10560502	104	2.1	103	86	7	299	27	14	17	40	1.88
10560407--10560566	75	2.1	76	89	1	241	30	15	21	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10560125--10560982	176	4.8	177	78	12	775	26	17	20	36	1.94
10561189--10561270	37	2.2	37	93	0	137	45	21	20	12	1.84
10561739--10561911	30	5.8	30	84	2	213	26	46	4	23	1.70
10562388--10562515	23	5.5	22	70	17	82	35	3	1	59	1.25
10562388--10562519	48	2.8	45	77	10	124	35	3	1	59	1.25
10562538--10562629	25	3.9	25	80	6	86	31	8	5	54	1.54
10562545--10562634	23	3.9	24	75	12	73	33	6	5	54	1.50
10562756--10562803	16	3.1	15	90	6	69	31	2	2	64	1.16
10562756--10562807	8	6.5	8	82	8	61	30	1	1	65	1.14
10588486--10588594	42	2.6	42	86	1	148	12	19	14	53	1.73
10592911--10593118	102	2.0	102	97	0	389	44	13	11	31	1.79
10596229--10596316	22	4.0	22	91	7	128	43	3	4	48	1.40
10600293--10600407	58	2.0	58	96	0	212	32	20	23	24	1.98
10606325--10606361	10	3.8	10	89	3	58	16	8	0	75	1.02
10606322--10606361	15	2.8	14	81	7	53	17	7	0	75	1.03
10610086--10610159	37	2.0	37	94	0	130	17	31	6	44	1.75
10610751--10610804	23	2.4	24	78	12	60	33	0	3	62	1.12
10615562--10615622	17	3.7	16	78	8	59	24	18	22	34	1.96
10616271--10616333	26	2.4	26	100	0	126	20	12	6	60	1.54
10616271--10616333	13	4.8	13	84	0	90	20	12	6	60	1.54
10618137--10618172	18	1.9	19	88	5	56	69	8	13	8	1.36
10618158--10618203	16	2.8	16	83	3	56	67	4	26	2	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10618448--10618486	16	2.5	17	80	19	50	48	17	0	33	1.48
10619136--10619220	16	5.2	16	68	18	50	3	24	3	68	1.22
10626205--10626230	13	2.0	13	100	0	52	23	15	23	38	1.92
10629679--10629723	24	1.9	23	86	13	65	46	11	0	42	1.39
10640498--10640545	25	1.9	25	83	8	62	37	12	45	4	1.61
10644307--10644355	24	2.0	26	88	8	75	30	4	0	65	1.11
10644307--10644367	26	2.5	23	84	10	68	29	3	0	67	1.07
10648000--10648037	20	1.9	20	84	10	51	42	13	23	21	1.88
10649886--10650071	46	4.0	46	88	1	239	38	13	24	23	1.91
10655993--10656034	20	2.1	20	100	0	84	52	9	28	9	1.65
10657337--10657373	14	2.6	14	95	0	65	54	0	35	10	1.36
10664910--10664941	15	2.1	15	94	0	55	62	0	3	34	1.11
10667231--10667282	23	2.3	22	75	21	54	9	23	1	65	1.32
10667240--10667294	12	4.6	12	73	15	51	12	23	0	63	1.29
10667276--10667313	17	2.2	18	85	4	51	10	23	2	63	1.39
10674640--10674693	24	2.3	22	84	12	72	27	1	1	68	1.10
10674888--10674985	29	3.4	29	79	9	85	47	15	15	21	1.81
10674884--10674957	29	2.5	29	81	12	89	50	13	12	24	1.76
10674933--10674999	28	2.4	28	89	2	107	44	16	17	20	1.86
10674933--10675012	28	2.8	28	84	5	99	43	16	16	23	1.87
10676250--10676307	29	2.0	30	86	6	84	43	6	13	36	1.71
10677049--10677094	22	2.1	22	100	0	92	23	8	4	63	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10684359--10684388	3	10.0	3	92	0	51	63	0	3	33	1.11
10694672--10694698	2	13.5	2	100	0	54	0	0	48	51	1.00
10700547--10700582	14	2.6	14	95	4	65	52	0	0	47	1.00
10702795--10702909	60	1.9	61	85	8	164	33	17	10	38	1.84
10702972--10703118	60	2.4	59	85	7	197	38	11	21	28	1.88
10706282--10706350	30	2.3	29	78	9	77	40	2	1	55	1.24
10706307--10706352	21	2.1	21	84	11	58	43	4	0	52	1.21
10708149--10708210	29	2.1	30	93	3	108	64	3	4	27	1.29
10712296--10712434	59	2.3	60	81	1	154	38	8	11	41	1.72
10724767--10725085	46	7.0	46	90	0	424	21	24	15	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290