genome.fa.s7.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  143  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45538498--45538541	22	1.9	24	86	9	65	61	0	2	36	1.09
45538494--45538546	24	2.2	25	78	18	60	62	0	1	35	1.06
45538496--45538548	20	2.5	21	84	12	72	62	0	1	35	1.06
45538641--45538684	19	2.2	20	88	11	65	68	0	6	25	1.14
45540357--45541041	119	5.7	119	92	0	965	30	18	17	33	1.94
45553117--45553176	21	2.8	20	74	18	57	58	1	6	33	1.34
45553196--45553310	18	5.8	21	70	16	77	60	0	6	33	1.28
45553358--45553394	19	1.9	19	94	0	65	62	2	5	29	1.31
45557318--45558766	775	1.8	787	89	6	2279	40	6	10	42	1.65
45558481--45558539	31	1.9	31	83	13	77	30	3	3	62	1.28
45565308--45565351	23	1.9	23	85	0	61	34	27	13	25	1.93
45567683--45567752	28	2.5	28	79	4	70	30	24	15	30	1.96
45569851--45569924	29	2.6	29	86	4	96	25	31	16	27	1.96
45577995--45578068	29	2.6	29	86	4	96	25	31	16	27	1.96
45583139--45583224	43	2.0	43	95	0	154	22	19	31	26	1.98
45588844--45588916	15	4.9	15	79	3	76	12	13	16	57	1.65
45594871--45594902	7	4.6	7	100	0	64	40	43	0	15	1.47
45595718--45595774	24	2.4	25	85	5	82	43	0	1	54	1.10
45611734--45612320	44	13.3	44	93	1	946	32	15	25	25	1.96
45613895--45613937	18	2.4	17	84	7	59	30	2	0	67	1.03
45615907--45615948	22	1.9	22	85	9	59	42	19	16	21	1.89
45635957--45636009	26	2.0	26	100	0	106	37	30	7	24	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45642135--45642343	46	4.5	45	74	9	154	23	29	20	27	1.99
45647412--45647634	119	1.9	120	85	6	319	26	27	22	24	2.00
45647391--45647634	40	6.1	40	83	6	282	25	27	22	24	2.00
45648012--45648068	25	2.5	23	81	15	66	8	19	1	70	1.23
45651231--45651277	23	2.0	23	100	0	94	25	29	29	14	1.95
45654603--45654818	119	1.8	120	85	7	305	26	26	21	25	1.99
45654627--45654825	79	2.5	80	80	9	219	26	26	21	25	2.00
45654582--45654825	40	6.1	40	82	6	264	26	27	21	25	2.00
45655203--45655260	25	2.5	24	81	13	68	8	18	1	70	1.21
45657674--45657800	23	5.4	24	89	7	190	29	20	19	29	1.97
45657849--45657915	20	3.3	20	93	0	116	32	20	11	34	1.90
45657849--45657904	11	5.5	11	71	16	57	32	19	12	35	1.89
45657952--45657999	25	1.9	25	86	0	69	25	16	25	33	1.96
45659923--45660010	45	1.9	46	83	2	115	44	7	18	29	1.78
45665972--45666005	17	1.9	18	94	5	61	76	0	17	5	0.98
45673166--45673199	17	1.9	18	88	5	52	76	0	14	8	1.01
45677359--45677411	26	2.0	26	92	0	88	28	28	7	35	1.84
45678388--45678416	3	9.7	3	100	0	58	0	31	0	68	0.89
45679656--45679727	5	14.4	5	76	5	74	37	20	4	37	1.72
45681910--45681940	16	1.9	16	93	0	53	25	16	6	51	1.68
45687541--45687641	26	4.2	26	76	17	108	35	25	7	30	1.85
45687551--45687636	45	1.9	45	92	0	145	34	26	5	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45689073--45689205	7	19.7	7	73	11	82	30	25	3	41	1.70
45689175--45689247	7	10.4	7	89	5	96	39	27	0	32	1.57
45689126--45689240	14	8.4	14	78	13	89	34	26	2	36	1.70
45689279--45689316	20	1.9	20	84	10	51	21	10	2	65	1.35
45700790--45700829	13	3.1	13	88	0	62	7	12	42	37	1.71
45701983--45702024	18	2.2	20	84	16	54	61	4	2	30	1.29
45706962--45707072	55	2.0	55	84	3	143	27	27	26	19	1.99
45707475--45707507	15	2.2	15	100	0	66	12	0	0	87	0.53
45711654--45711800	40	3.7	40	83	5	120	25	27	21	25	2.00
45711700--45711880	80	2.3	80	83	9	219	27	27	20	23	1.99
45711697--45711880	40	4.6	40	81	7	196	28	27	20	23	1.99
45719164--45719270	40	2.7	40	84	5	119	25	27	20	27	1.99
45719170--45719390	80	2.8	80	79	7	193	27	27	20	25	1.99
45719210--45719390	80	2.3	80	83	9	219	27	27	20	23	1.99
45719207--45719390	40	4.6	40	81	7	196	28	27	20	23	1.99
45722711--45722885	52	3.5	51	82	4	203	30	29	14	26	1.95
45722711--45722885	51	3.5	51	82	4	196	30	29	14	26	1.95
45728944--45729049	42	2.5	42	79	0	131	33	16	21	29	1.95
45734007--45734097	45	2.0	45	95	0	164	36	23	14	26	1.93
45736493--45736593	44	2.3	44	82	3	114	34	24	13	26	1.93
45746675--45746710	18	1.9	19	88	5	56	41	0	5	52	1.24
45766419--45766533	29	4.0	29	80	5	135	28	12	31	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45770925--45771009	29	3.0	28	77	1	89	30	15	30	23	1.95
45772045--45772079	18	2.0	18	88	5	54	37	20	14	28	1.91
45775373--45775447	37	2.0	37	94	0	132	41	21	16	21	1.90
45777147--45777288	31	4.5	31	72	11	101	50	3	6	39	1.45
45777686--45777732	19	2.5	19	80	16	53	36	8	4	51	1.52
45777727--45777777	21	2.6	21	87	12	65	33	0	0	66	0.92
45778069--45778118	23	2.2	23	85	0	64	30	0	6	64	1.18
45778793--45778829	3	12.3	3	91	0	56	70	2	0	27	1.01
45778799--45778853	18	3.1	18	84	10	60	67	5	0	27	1.12
45778907--45778954	19	2.5	19	80	10	53	35	2	0	62	1.07
45779345--45779386	15	3.0	14	86	10	59	61	7	0	30	1.22
45780711--45780750	19	2.1	19	85	0	53	42	12	10	35	1.76
45782386--45782471	35	2.5	35	81	9	106	45	0	4	50	1.22
45782413--45782473	24	2.5	23	80	15	61	45	0	4	49	1.23
45783839--45783949	45	2.5	45	88	2	170	21	17	18	42	1.89
45783932--45783972	6	6.7	6	83	5	55	17	19	17	46	1.85
45785417--45785531	29	4.0	28	75	5	113	26	28	14	30	1.95
45785419--45785531	58	2.0	57	83	1	145	25	28	15	30	1.95
45785604--45785640	19	2.0	18	89	5	56	18	37	16	27	1.92
45785613--45785649	19	1.9	19	88	0	56	16	37	18	27	1.92
45785751--45785804	16	3.4	16	81	0	72	12	22	16	48	1.80
45785752--45785804	8	6.6	8	75	0	52	13	22	15	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45789181--45789210	15	1.9	16	93	6	53	50	6	0	43	1.28
45790362--45790422	27	2.1	28	85	11	79	27	0	3	68	1.05
45790374--45790449	28	2.5	30	80	14	86	32	0	3	63	1.13
45790374--45790429	26	2.1	28	86	6	80	28	0	3	67	1.07
45790390--45790445	26	2.2	26	83	6	69	35	0	1	62	1.06
45790391--45790450	25	2.3	26	80	8	61	36	0	3	60	1.14
45793561--45793629	28	2.4	28	85	7	93	33	2	2	60	1.26
45798272--45798392	44	2.8	43	78	9	131	21	16	26	35	1.94
45804024--45804221	43	4.6	43	86	3	256	30	29	16	23	1.96
45804024--45804221	85	2.3	86	83	4	258	30	29	16	23	1.96
45805669--45805699	15	2.0	16	93	6	55	38	6	3	51	1.44
45808054--45808320	43	6.2	43	85	3	349	33	22	20	23	1.97
45808054--45808320	85	3.1	86	87	2	367	33	22	20	23	1.97
45809016--45809044	13	2.1	14	93	6	51	58	0	0	41	0.98
45814186--45814352	9	17.6	9	76	10	154	31	0	21	46	1.56
45814190--45814352	39	4.2	40	86	9	168	30	0	21	47	1.56
45814201--45814340	39	3.4	44	87	10	183	30	0	22	45	1.58
45814186--45814352	57	2.9	57	81	7	196	31	0	21	46	1.56
45814186--45814341	48	3.2	48	80	3	188	31	0	22	45	1.57
45814911--45814960	23	2.2	23	100	0	100	34	16	16	34	1.90
45816913--45816939	7	3.9	7	100	0	54	59	0	0	40	0.98
45817484--45817535	19	2.7	19	90	3	77	32	3	38	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45818616--45818651	15	2.5	15	90	4	56	27	2	25	44	1.68
45818823--45818880	29	2.0	29	89	0	89	20	6	39	32	1.79
45819800--45819938	27	5.1	27	86	6	165	37	22	23	17	1.94
45824231--45824448	40	5.5	40	91	2	325	23	22	27	25	2.00
45828355--45828464	27	4.1	27	81	10	127	38	22	23	15	1.92
45828355--45828464	54	2.0	54	85	3	150	38	22	23	15	1.92
45830932--45831128	41	4.8	41	90	1	279	20	21	21	36	1.95
45832736--45832787	7	7.0	7	85	10	59	28	0	0	71	0.87
45832732--45832788	23	2.5	22	86	5	87	28	0	0	71	0.86
45832744--45832787	16	2.8	16	86	10	56	29	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290