genome.fa.s7.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  282  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90271557--90271604	14	3.4	14	82	2	60	47	25	2	25	1.62
90272016--90272378	41	8.9	41	87	2	462	21	25	21	31	1.98
90272550--90272651	51	2.0	51	98	1	197	38	15	14	31	1.88
90276480--90276534	14	4.2	13	77	11	51	52	1	1	43	1.22
90276525--90276582	18	3.2	19	73	9	50	65	3	1	29	1.19
90276800--90276871	16	4.8	16	72	16	64	62	4	2	30	1.28
90276792--90276891	14	7.1	13	72	19	69	62	3	4	31	1.29
90276968--90277031	26	2.6	24	78	14	67	48	0	4	46	1.23
90276977--90277034	24	2.6	23	74	15	59	51	0	5	43	1.24
90278474--90278958	87	5.5	88	67	15	279	28	20	18	32	1.96
90278519--90278974	175	2.6	176	92	0	763	27	19	19	33	1.96
90287068--90287100	14	2.2	16	89	10	52	45	12	21	21	1.84
90290903--90290957	14	4.2	13	77	11	51	52	1	1	43	1.22
90291205--90291304	14	7.1	13	72	19	60	62	3	5	30	1.32
90291344--90291405	26	2.3	26	81	13	72	51	0	3	45	1.17
90291344--90291423	26	3.1	25	78	16	67	50	0	5	45	1.23
90291362--90291426	26	2.6	25	79	13	71	47	0	4	47	1.22
90291362--90291429	24	2.8	24	78	12	61	47	0	5	47	1.26
90294233--90294257	12	2.1	12	100	0	50	84	0	16	0	0.63
90294221--90294264	21	2.0	22	86	8	63	75	4	20	0	0.98
90324321--90324396	39	1.9	40	86	2	109	39	2	30	27	1.70
90325897--90326070	46	3.8	45	75	13	183	28	29	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90325904--90326074	93	1.8	93	91	0	279	28	29	21	20	1.98
90332263--90332339	27	2.9	26	72	11	75	49	11	10	28	1.72
90338585--90338636	25	2.1	25	100	0	104	25	32	3	38	1.74
90357779--90357898	38	3.1	38	81	4	143	22	22	24	30	1.99
90364097--90364233	38	3.6	37	80	5	139	21	20	24	34	1.97
90374862--90374999	68	2.0	71	86	11	196	39	4	4	51	1.42
90382161--90382279	40	3.1	39	71	18	104	37	15	19	27	1.91
90382096--90382499	77	5.2	76	81	5	339	39	16	18	24	1.91
90382281--90382402	37	3.2	37	65	19	97	39	20	18	22	1.93
90382097--90382499	154	2.6	153	79	3	425	39	16	18	24	1.91
90384977--90385025	23	2.1	23	85	7	64	34	24	4	36	1.75
90388104--90388150	24	1.9	25	91	4	78	34	25	14	25	1.94
90388187--90388249	20	3.2	20	93	0	108	36	12	20	30	1.90
90388303--90388399	24	4.0	24	84	11	126	30	19	21	27	1.98
90388303--90388399	49	1.9	50	87	8	144	30	19	21	27	1.98
90396146--90396193	25	1.9	26	83	8	64	35	22	16	25	1.95
90396230--90396292	20	3.2	20	93	0	108	36	12	20	30	1.90
90396345--90396397	25	2.1	25	96	3	97	35	18	18	26	1.95
90399947--90399978	17	1.9	17	93	6	57	65	0	6	28	1.16
90400982--90401010	3	10.0	3	92	7	51	31	0	0	68	0.89
90402267--90402305	6	6.5	6	90	0	60	23	17	10	48	1.78
90402267--90402311	12	3.8	12	90	0	72	24	20	8	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90402267--90402311	18	2.5	18	85	0	63	24	20	8	46	1.78
90402419--90402457	17	2.2	17	86	4	51	33	17	12	35	1.88
90404481--90404801	105	3.0	107	90	3	495	22	24	28	24	1.99
90405710--90405756	24	2.0	24	95	0	85	17	17	12	53	1.73
90410995--90411057	21	3.4	17	80	14	56	66	0	1	31	1.01
90410995--90411057	10	6.8	9	70	25	51	66	0	1	31	1.01
90411654--90411783	30	4.3	30	72	17	92	33	6	3	56	1.42
90411765--90411801	18	2.1	18	89	0	56	29	8	0	62	1.24
90412131--90412174	16	2.9	15	83	6	61	47	0	2	50	1.13
90414834--90414867	14	2.5	14	95	4	61	26	8	5	58	1.51
90418190--90418232	20	2.2	20	82	0	50	37	0	2	60	1.10
90418842--90418881	19	2.1	19	90	0	62	32	15	15	37	1.88
90423084--90423108	11	2.3	11	100	0	50	76	0	0	24	0.80
90423072--90423122	20	2.5	20	81	9	59	62	1	0	35	1.06
90426350--90426394	19	2.3	20	85	14	67	64	0	0	35	0.94
90427581--90427622	22	1.9	22	95	0	75	54	7	11	26	1.62
90427588--90427627	11	3.6	11	79	0	53	57	7	15	20	1.61
90427915--90427947	6	5.8	6	86	13	52	63	0	0	36	0.95
90427914--90427975	12	5.5	11	76	17	56	56	1	0	41	1.09
90427923--90427994	29	2.5	30	78	17	80	52	1	0	45	1.09
90428951--90428977	7	3.9	7	100	0	54	88	0	0	11	0.50
90433115--90433161	23	2.0	23	100	0	94	17	12	8	61	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90434093--90434129	16	2.3	17	81	13	51	35	0	2	62	1.10
90441104--90441128	13	1.9	13	100	0	50	16	0	4	80	0.87
90442091--90442139	10	4.9	10	82	9	64	18	8	4	69	1.30
90443458--90443496	19	2.1	18	86	13	53	35	41	5	17	1.72
90444585--90444715	3	44.0	3	71	10	72	29	8	3	58	1.46
90444588--90444698	41	2.7	41	79	10	104	29	9	4	56	1.50
90444684--90444721	18	2.1	18	90	0	58	28	10	0	60	1.30
90444777--90444836	7	8.3	7	76	12	59	28	0	3	68	1.05
90445036--90445077	3	14.0	3	100	0	84	33	0	0	66	0.92
90445579--90445645	33	2.0	33	100	0	134	29	19	20	29	1.97
90446405--90446446	20	2.0	21	90	4	68	45	9	16	28	1.79
90449453--90449497	23	1.9	24	82	13	58	17	11	6	64	1.46
90453409--90453447	19	2.1	19	85	0	51	69	5	20	5	1.28
90454151--90454233	44	1.9	44	85	7	116	27	26	19	26	1.99
90454286--90454536	86	2.9	85	85	5	301	23	21	24	30	1.99
90454294--90455454	44	26.7	44	69	10	571	25	23	21	29	1.99
90454428--90455456	130	7.9	130	90	1	1601	25	24	21	29	1.99
90454509--90455454	86	10.9	85	70	10	484	25	24	20	29	1.99
90454428--90455456	262	3.9	260	92	0	1619	25	24	21	29	1.99
90461210--90461249	21	1.9	21	85	10	55	57	17	5	20	1.58
90463025--90463097	32	2.3	32	82	0	92	36	8	2	52	1.46
90464455--90464510	29	2.0	28	82	10	69	64	0	5	30	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90473355--90473433	37	2.1	37	90	0	122	25	31	18	24	1.98
90473552--90473888	47	7.1	47	91	2	530	28	30	8	32	1.88
90473552--90473888	143	2.4	141	90	3	530	28	30	8	32	1.88
90473552--90473885	96	3.5	96	94	0	564	28	30	8	31	1.88
90475735--90475768	16	2.1	17	88	5	52	55	8	11	23	1.63
90476462--90476545	20	4.3	20	73	19	63	63	0	5	30	1.19
90478134--90478401	83	3.2	83	90	2	403	26	20	19	33	1.96
90478325--90478639	119	2.6	119	90	2	499	29	19	17	34	1.94
90478242--90478960	321	2.2	321	94	0	1267	28	19	17	34	1.95
90478444--90478817	202	1.9	202	92	0	631	28	18	18	34	1.95
90478563--90478721	83	1.9	83	89	0	246	25	20	19	33	1.96
90478646--90479118	119	4.0	119	93	1	752	29	19	17	34	1.94
90488914--90488964	23	2.3	22	79	3	57	49	1	5	43	1.38
90489575--90489641	31	2.2	32	94	5	120	40	11	16	31	1.85
90490320--90490349	14	2.1	14	100	0	60	43	6	20	30	1.77
90492124--90492161	13	3.1	12	85	14	51	73	0	18	7	1.06
90501923--90501970	20	2.3	21	92	3	80	33	14	12	39	1.84
90503182--90503228	17	2.9	16	78	15	51	72	4	0	23	1.02
90503182--90503231	16	3.1	16	80	13	57	70	6	0	24	1.10
90508239--90508288	6	8.0	6	82	8	64	24	0	0	76	0.80
90508243--90508287	20	2.3	20	92	3	74	24	0	0	75	0.80
90508239--90508300	26	2.4	26	86	0	79	24	1	0	74	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90508239--90508274	14	2.7	14	91	8	58	19	0	0	80	0.71
90508243--90508299	20	2.9	20	87	7	64	26	1	0	71	0.95
90508239--90508300	14	4.8	13	82	11	56	24	1	0	74	0.91
90509817--90509852	18	2.0	18	94	0	63	25	11	36	27	1.90
90510086--90510238	53	2.9	52	80	4	155	43	3	30	22	1.69
90511228--90511283	25	2.2	25	78	12	62	55	10	5	28	1.56
90512486--90512583	20	4.6	20	65	22	56	42	6	3	47	1.43
90512507--90512608	30	3.2	30	65	20	80	44	6	2	46	1.45
90512481--90512615	66	2.0	66	100	0	270	43	8	2	45	1.48
90516749--90516812	20	3.2	19	78	10	74	75	1	4	18	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290