genome.fa.s7.2.7.7.80.10.50.1000.277.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  277  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88735076--88735126	15	3.4	15	89	5	68	33	0	1	64	1.05
88735466--88735565	27	3.8	26	72	13	71	30	12	5	53	1.59
88735503--88735560	27	2.1	27	84	6	73	34	10	1	53	1.45
88741915--88742015	38	2.7	38	93	0	166	39	21	9	28	1.86
88755601--88755669	33	2.1	33	97	0	129	34	14	28	21	1.93
88758821--88758857	18	2.2	16	90	9	56	40	0	0	59	0.97
88759352--88759404	27	2.0	27	84	0	70	56	7	11	24	1.60
88760950--88761995	352	3.0	352	95	1	1869	34	18	15	31	1.93
88767888--88767920	9	3.7	9	91	0	57	24	12	24	39	1.89
88767886--88767920	18	1.9	18	100	0	70	28	11	22	37	1.89
88767972--88768008	9	4.1	9	85	0	56	45	16	8	29	1.76
88768310--88768381	19	3.6	19	82	14	99	19	40	0	40	1.52
88772299--88772353	24	2.2	26	90	9	87	54	0	7	38	1.28
88772372--88772403	14	2.1	16	88	11	50	56	3	6	34	1.40
88772481--88772522	22	1.9	22	85	9	59	66	4	4	23	1.30
88772490--88772536	22	2.1	22	84	7	60	68	4	4	23	1.26
88774027--88774945	177	5.2	176	87	3	1215	28	24	17	29	1.97
88774803--88774898	43	2.2	44	81	3	122	29	25	15	30	1.96
88774021--88774966	353	2.7	353	85	3	1273	27	24	17	30	1.97
88775146--88775337	64	3.0	64	89	0	312	37	15	16	30	1.90
88776400--88776455	10	4.7	12	80	17	55	8	7	1	82	0.92
88776414--88776462	10	4.6	10	85	14	71	10	2	2	85	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88776401--88776462	23	2.7	22	87	9	81	9	4	1	83	0.85
88776396--88776475	23	3.6	21	77	11	61	7	12	1	78	1.01
88776469--88776504	14	2.6	14	90	0	54	16	2	2	77	1.00
88777488--88777551	20	3.5	18	78	20	53	21	28	0	50	1.49
88777670--88777713	17	2.7	16	76	16	54	34	0	9	56	1.31
88783018--88783097	34	2.5	30	80	11	88	55	2	6	36	1.39
88783210--88783263	22	2.5	21	82	14	58	68	5	1	24	1.21
88784742--88784877	22	6.1	21	75	14	112	58	0	0	41	1.03
88784757--88784829	13	5.9	13	69	27	61	61	0	0	38	0.96
88784742--88784852	34	3.2	34	81	15	138	60	0	0	39	0.97
88784813--88784885	23	3.2	22	84	5	92	56	1	0	42	1.08
88784744--88784884	68	2.0	66	81	10	158	58	0	0	40	1.03
88785672--88785765	45	2.1	45	81	0	107	12	7	5	74	1.20
88785780--88785948	36	4.8	34	83	11	164	42	0	1	55	1.15
88785798--88785842	21	2.1	22	87	4	65	42	0	0	57	0.98
88785828--88785927	13	8.2	12	68	24	59	40	1	2	57	1.17
88785833--88785877	20	2.1	23	80	16	60	37	0	2	60	1.09
88785785--88785951	71	2.4	73	81	13	206	40	0	1	56	1.14
88785834--88785976	22	6.3	22	66	22	66	41	0	1	55	1.13
88785942--88786000	27	2.1	27	84	6	73	49	1	0	49	1.11
88785940--88785995	29	2.0	29	82	6	71	48	1	0	50	1.11
88785980--88786013	13	2.7	13	90	4	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88786108--88786139	13	2.4	14	85	15	50	46	0	0	53	1.00
88786214--88786272	31	1.9	30	83	10	75	55	5	3	35	1.38
88786377--88786429	20	2.6	21	82	11	65	58	0	1	39	1.09
88786394--88786418	13	1.9	13	100	0	50	60	0	0	40	0.97
88786398--88786500	36	2.9	36	79	9	115	53	1	1	42	1.23
88786424--88786448	13	1.9	13	100	0	50	56	4	0	40	1.18
88786535--88786653	9	13.1	9	68	11	55	75	3	5	15	1.11
88786530--88786572	13	3.2	13	86	3	50	76	4	0	18	0.95
88786528--88786584	23	2.5	24	83	11	66	75	3	1	19	1.04
88786565--88786632	29	2.4	27	78	9	73	73	2	5	17	1.16
88786542--88786650	16	7.3	15	71	17	57	75	2	5	16	1.11
88786595--88786651	16	3.3	17	83	9	62	77	1	8	12	1.07
88794237--88794294	23	2.6	21	79	12	62	51	0	1	46	1.11
88794243--88794294	11	4.6	11	75	13	52	51	0	1	46	1.12
88799879--88799909	12	2.5	12	94	5	53	45	3	0	51	1.17
88800575--88800599	7	3.6	7	100	0	50	16	12	0	72	1.13
88801674--88801712	19	2.1	19	100	0	78	28	20	15	35	1.93
88805009--88805176	43	4.0	42	75	4	158	27	15	23	32	1.95
88805388--88805447	29	2.1	29	100	0	120	26	3	25	45	1.69
88807206--88807276	15	4.9	14	73	19	56	26	7	1	64	1.27
88807206--88807276	29	2.5	28	75	22	67	26	7	1	64	1.27
88807501--88807605	3	35.7	3	74	9	74	27	5	1	64	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88808645--88808673	6	4.8	6	100	0	58	17	17	0	65	1.27
88815211--88815255	13	3.8	12	82	11	58	13	11	0	75	1.05
88825296--88825352	10	5.4	10	78	15	53	77	0	21	1	0.86
88825287--88825365	22	3.6	23	75	17	71	77	0	18	3	0.92
88825298--88825341	13	3.2	13	80	6	52	77	0	20	2	0.88
88825485--88825537	24	2.3	23	93	3	88	64	9	26	0	1.24
88826120--88826167	17	2.8	17	76	23	55	31	16	10	41	1.82
88826288--88826336	24	2.0	24	88	0	71	42	4	6	46	1.47
88826320--88826353	17	2.0	17	100	0	68	47	5	5	41	1.52
88826356--88826485	18	7.3	18	75	11	90	34	13	10	42	1.77
88826406--88826483	19	4.2	19	83	8	88	37	14	8	39	1.77
88826406--88826483	20	4.1	20	79	18	87	37	14	8	39	1.77
88826419--88826501	38	2.2	38	84	4	105	36	12	9	42	1.75
88839797--88839852	11	4.7	12	74	14	53	73	0	25	1	0.93
88839794--88839863	31	2.3	31	82	7	81	74	0	24	1	0.90
88839797--88839843	22	2.1	23	88	4	69	76	0	23	0	0.78
88839860--88839893	8	4.1	8	88	3	50	82	2	2	11	0.89
88839994--88840048	24	2.3	24	90	9	94	63	10	25	0	1.27
88840630--88840677	17	2.8	17	76	23	55	31	16	10	41	1.82
88840741--88840805	17	3.8	17	72	11	60	36	15	12	35	1.85
88840765--88840819	17	2.9	19	70	15	51	38	12	10	38	1.79
88840797--88840844	24	2.0	24	87	0	69	39	4	6	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88840797--88840844	25	2.0	24	91	4	78	39	4	6	50	1.47
88840913--88840990	19	4.2	19	83	8	88	37	14	8	39	1.77
88840913--88840990	20	4.1	20	79	18	87	37	14	8	39	1.77
88840926--88841008	38	2.2	38	84	4	105	36	12	9	42	1.75
88840829--88840992	17	9.4	17	75	13	86	35	12	9	42	1.75
88843384--88843418	16	2.1	17	94	5	63	40	0	0	60	0.97
88843384--88843419	17	2.1	17	94	0	63	41	0	0	58	0.98
88843388--88843426	17	2.2	17	86	4	51	43	0	0	56	0.99
88849004--88849057	26	2.2	26	83	6	67	44	3	1	50	1.30
88849040--88849089	20	2.6	19	85	14	68	36	0	2	62	1.07
88849047--88849097	20	2.5	20	83	6	66	37	0	1	60	1.08
88853973--88854010	16	2.4	16	82	4	51	36	0	0	63	0.95
88855355--88855389	16	2.2	16	100	0	70	54	8	20	17	1.68
88868189--88868406	46	5.0	45	81	10	236	21	23	15	38	1.92
88868321--88868396	38	2.0	38	100	0	152	23	23	18	34	1.96
88870541--88870612	27	2.6	28	73	20	80	56	4	1	37	1.27
88873197--88873221	11	2.3	11	100	0	50	28	8	24	40	1.83
88873331--88873365	18	2.0	18	88	5	54	42	20	0	37	1.52
88874794--88874912	45	2.6	45	97	0	220	15	35	10	38	1.82
88875164--88875287	54	2.3	54	87	0	185	21	30	26	20	1.98
88887344--88887389	22	2.1	22	100	0	92	39	13	0	47	1.42
88889665--88889799	35	3.7	37	77	10	143	33	23	11	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88897759--88897787	12	2.3	13	94	5	51	24	0	0	75	0.80
88897887--88897918	8	4.0	8	95	0	55	46	0	0	53	1.00
88897885--88897919	17	2.1	17	88	0	52	48	0	0	51	1.00
88897910--88897958	21	2.3	22	86	10	66	46	0	0	53	1.00
88906599--88906644	13	3.6	13	77	11	51	32	6	0	60	1.22
88911476--88911525	20	2.5	21	87	6	68	44	0	0	56	0.99
88911480--88911525	21	2.2	20	88	7	65	45	0	0	54	0.99
88920223--88920290	32	2.1	32	97	0	127	50	0	7	42	1.30
88920561--88920595	12	2.9	12	87	12	54	42	0	0	57	0.99
88922988--88923246	126	2.0	127	87	1	376	39	18	14	27	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290