genome.fa.s7.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  118  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36813384--36813503	26	4.5	26	76	7	107	40	19	10	29	1.85
36813384--36813503	53	2.3	53	82	2	143	40	19	10	29	1.85
36813384--36813503	27	4.5	27	78	7	129	40	19	10	29	1.85
36813514--36813739	27	8.4	27	87	0	326	30	21	7	39	1.82
36813610--36813858	27	9.2	27	82	5	128	35	23	7	33	1.83
36813718--36813830	54	2.1	54	84	0	145	43	23	5	28	1.75
36813610--36813795	81	2.3	81	83	1	221	34	23	6	34	1.82
36813842--36814278	27	16.2	27	86	2	558	35	19	19	25	1.96
36813788--36814278	54	9.1	54	85	2	576	35	19	18	25	1.95
36813788--36814278	81	6.1	82	80	5	534	35	19	18	25	1.95
36814285--36814350	27	2.4	27	76	0	69	18	19	24	37	1.93
36814507--36814585	27	3.0	27	80	7	90	21	21	18	37	1.94
36814676--36814734	22	2.7	22	81	0	64	20	25	22	32	1.98
36814899--36814972	27	2.8	27	81	6	80	17	22	21	37	1.94
36815090--36815282	6	31.8	6	75	15	175	19	16	14	49	1.80
36815090--36815277	85	2.2	85	92	3	308	19	16	14	48	1.80
36815173--36815303	36	3.9	34	75	19	116	19	16	14	49	1.79
36817252--36817425	53	3.3	53	83	5	201	40	20	10	29	1.85
36817252--36817425	27	6.5	27	81	8	187	40	20	10	29	1.85
36817438--36817661	27	8.3	27	86	0	286	31	21	7	39	1.81
36817436--36817661	54	4.2	54	91	0	344	31	21	7	39	1.80
36817532--36817752	27	8.2	26	80	3	84	35	23	6	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36817436--36817690	81	3.1	81	80	4	273	32	21	7	38	1.81
36817709--36817779	27	2.6	27	93	0	115	42	23	7	26	1.80
36817764--36818228	27	17.3	27	82	3	481	35	18	19	26	1.95
36817710--36818229	54	9.6	54	80	3	444	35	19	18	26	1.95
36817710--36818201	81	6.1	81	79	6	498	35	19	17	26	1.94
36818427--36818509	27	3.1	26	87	5	112	19	21	21	37	1.94
36818820--36818893	27	2.8	27	81	6	80	17	22	21	37	1.94
36819011--36819160	6	24.8	6	75	16	141	20	17	14	48	1.81
36819014--36819160	24	5.8	24	81	12	170	20	17	14	47	1.82
36820321--36820500	40	4.5	39	86	2	234	30	28	21	18	1.97
36820321--36820500	80	2.2	80	89	0	270	30	28	21	18	1.97
36822647--36822672	3	8.7	3	100	0	52	0	0	30	69	0.89
36829934--36829960	13	2.1	13	100	0	54	14	37	33	14	1.88
36830470--36830508	20	2.0	20	100	0	78	15	10	23	51	1.73
36836370--36836590	46	4.7	46	77	11	175	28	19	28	22	1.98
36836369--36836589	47	4.7	48	77	8	181	28	19	29	22	1.98
36836328--36836591	140	1.9	141	81	5	329	28	19	28	23	1.98
36842291--36842317	10	2.7	10	100	0	54	7	40	7	44	1.60
36861820--36861861	22	2.0	21	86	9	59	38	11	26	23	1.90
36862816--36862979	60	2.7	61	84	3	197	32	12	24	29	1.92
36863289--36863319	16	1.9	16	93	0	53	9	6	9	74	1.23
36864676--36864751	37	2.1	36	83	11	93	40	2	2	53	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36870454--36870554	50	2.0	50	100	0	202	42	11	7	37	1.71
36885362--36885407	19	2.4	19	96	0	83	13	28	30	28	1.94
36889762--36889845	42	2.0	42	90	0	132	23	28	21	26	1.99
36895400--36895489	42	2.1	41	86	8	119	27	25	18	27	1.98
36895306--36895519	90	2.4	90	78	3	225	29	25	17	27	1.98
36900481--36900512	16	2.0	16	100	0	64	50	6	6	37	1.53
36905498--36905685	42	4.4	43	76	11	181	28	23	19	28	1.98
36905519--36905718	85	2.4	85	90	0	310	28	25	20	26	1.99
36905519--36905722	43	4.8	43	75	12	170	28	25	20	25	1.99
36912402--36912469	20	3.3	20	66	18	59	35	26	7	30	1.84
36912390--36912474	41	2.1	41	100	0	170	36	27	7	29	1.83
36912928--36913148	43	5.2	43	75	4	189	29	25	19	25	1.99
36912953--36913151	85	2.3	85	91	0	308	29	26	21	23	1.99
36921786--36921923	55	2.5	55	80	4	145	24	20	28	26	1.99
36923601--36923642	22	2.0	21	85	4	57	9	40	28	21	1.84
36925562--36925621	17	3.4	16	76	17	57	43	1	5	50	1.34
36927587--36927646	27	2.3	26	82	2	66	38	20	20	21	1.94
36928329--36928382	27	2.0	27	85	3	74	35	20	22	22	1.96
36928383--36928555	81	2.1	81	84	0	220	24	19	20	35	1.96
36928383--36928555	27	6.4	27	84	0	193	24	19	20	35	1.96
36932652--36932862	43	4.9	43	75	12	166	30	15	22	31	1.95
36939244--36939301	25	2.4	23	82	8	62	20	5	1	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36951515--36951614	51	2.0	51	86	4	139	32	27	17	24	1.96
36951586--36951698	43	2.7	43	81	1	147	31	30	16	20	1.95
36955628--36955736	57	1.9	57	90	0	173	43	15	11	29	1.83
36957223--36957258	16	2.1	18	90	10	58	38	0	0	61	0.96
36957399--36957437	19	2.1	19	100	0	78	43	15	5	35	1.69
36959145--36959177	2	16.5	2	100	0	66	0	51	0	48	1.00
36962007--36962031	11	2.3	11	100	0	50	92	8	0	0	0.40
36962346--36962370	11	2.3	11	100	0	50	44	36	0	20	1.52
36964865--36965019	59	2.6	59	84	8	192	43	1	3	51	1.29
36964880--36965022	29	5.0	26	70	20	81	44	1	3	51	1.27
36965181--36965247	32	2.1	32	85	0	89	28	17	2	50	1.61
36965190--36965247	16	3.6	16	72	9	55	27	17	1	53	1.53
36965767--36965873	57	1.9	53	85	10	144	52	2	0	44	1.15
36970941--36970999	21	2.8	22	82	7	61	23	1	6	67	1.24
36970954--36970999	22	2.2	22	84	7	60	26	0	4	69	1.07
36970973--36971030	25	2.3	26	80	11	68	27	0	3	68	1.05
36971508--36971571	29	2.1	31	83	11	80	35	0	3	60	1.12
36971549--36971573	8	3.1	8	100	0	50	24	0	0	76	0.80
36974604--36974836	45	5.2	45	92	0	367	19	18	20	41	1.90
36974826--36974890	6	10.7	6	74	9	60	18	15	18	47	1.82
36974839--36974888	25	2.0	25	84	7	66	20	18	18	44	1.88
36975685--36975722	19	2.0	19	100	0	76	52	10	15	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36976694--36976718	8	3.1	8	100	0	50	24	0	0	76	0.80
36976666--36976719	21	2.7	21	74	5	58	29	0	1	68	1.00
36978815--36978849	5	7.0	5	100	0	70	80	0	0	20	0.72
36982701--36982739	18	2.2	18	85	0	51	61	0	0	38	0.96
36992190--36992223	17	2.0	17	94	0	59	35	8	23	32	1.86
36995004--36995106	48	2.1	48	81	5	116	41	2	2	52	1.31
36995312--36995362	25	2.0	26	84	3	68	37	11	9	41	1.75
37000885--37000921	19	1.9	19	94	0	65	24	35	27	13	1.93
37001371--37001561	58	3.3	58	67	16	169	45	23	2	29	1.64
37001362--37001592	116	2.0	116	98	0	444	45	23	2	29	1.65
37010241--37010350	42	2.6	42	77	7	116	29	22	21	26	1.99
37010241--37010345	43	2.5	43	78	7	108	28	23	21	25	1.99
37025693--37025787	47	2.0	47	87	4	138	28	24	11	35	1.90
37032397--37032439	18	2.4	18	80	0	50	72	0	2	25	0.97
37036817--37036895	28	2.8	28	84	0	95	34	10	25	30	1.89
37037007--37037136	44	3.0	44	81	7	149	24	19	29	26	1.98
37039235--37039481	40	6.2	40	79	12	235	23	23	28	25	2.00
37039235--37039458	119	1.9	120	86	2	326	22	23	28	25	1.99
37039275--37039481	79	2.6	79	85	3	265	23	23	28	25	2.00
37057180--37057246	20	3.3	20	89	0	107	32	11	22	32	1.90
37057295--37057511	24	9.0	24	92	1	310	29	22	21	27	1.99
37064806--37064864	20	3.0	20	100	0	118	35	13	20	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37064914--37065130	24	9.0	24	93	1	337	29	23	20	26	1.99
37067988--37068054	20	3.3	20	74	15	75	17	25	19	37	1.94
37067978--37068092	40	2.8	40	85	5	142	20	26	19	33	1.96
37071378--37071443	30	2.2	30	86	0	87	19	28	31	19	1.97
37076116--37076492	207	1.8	207	95	0	682	34	16	18	29	1.94
37077813--37078032	119	1.8	119	81	1	271	27	22	11	38	1.89
37085841--37086009	61	2.8	60	73	16	159	32	11	26	30	1.91
37091046--37091214	43	4.0	42	72	10	137	24	15	27	32	1.95
37093281--37093349	33	2.1	33	97	0	129	34	11	13	40	1.80
37099057--37099112	21	2.7	21	83	2	69	23	30	30	16	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290