genome.fa.s7.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  190  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61031300--61031807	47	11.1	47	86	10	714	31	9	30	28	1.88
61031624--61031693	35	2.0	35	91	5	115	30	14	30	25	1.95
61031582--61031738	81	1.9	81	93	5	273	30	11	30	27	1.92
61032814--61032864	24	2.1	24	100	0	102	27	3	27	41	1.73
61036983--61037121	1	139.0	1	98	0	269	99	0	0	0	0.06
61044318--61044362	15	3.1	15	83	3	56	6	86	0	6	0.70
61044320--61044369	10	4.9	10	80	14	50	10	86	0	4	0.71
61044318--61044363	12	3.5	13	88	8	67	6	86	0	6	0.69
61044320--61044354	17	2.1	16	94	5	61	5	91	0	2	0.50
61045259--61045314	28	2.0	28	89	3	87	30	23	7	39	1.81
61052256--61052429	94	1.8	96	90	4	282	28	25	22	24	1.99
61052344--61052675	40	8.4	40	86	3	458	26	26	21	25	2.00
61052352--61052671	119	2.7	117	85	4	444	27	26	21	24	2.00
61054912--61055315	47	8.6	47	88	5	584	28	29	8	32	1.87
61054912--61055316	189	2.1	189	87	5	588	28	30	8	32	1.87
61059264--61059417	67	2.3	67	82	7	179	22	29	14	33	1.94
61060128--61060188	30	2.0	30	83	0	77	31	22	8	37	1.84
61061836--61061923	7	12.1	7	77	10	61	57	5	2	34	1.34
61061809--61061923	7	14.8	8	73	15	57	58	6	1	33	1.33
61061851--61061905	22	2.5	22	77	8	60	63	7	1	27	1.31
61067678--61067749	35	2.1	35	82	10	85	38	0	2	58	1.13
61069043--61069172	47	2.8	46	79	5	136	20	28	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61074595--61074769	46	3.8	45	76	10	192	29	29	19	21	1.97
61074602--61074774	93	1.9	93	92	2	294	28	30	19	21	1.98
61078377--61078615	120	2.0	120	91	0	388	29	25	21	23	1.99
61078363--61078608	40	6.2	40	90	3	347	28	26	21	23	1.99
61080018--61080045	13	2.2	13	100	0	56	57	14	0	28	1.38
61086436--61086638	39	5.2	40	91	5	317	28	26	21	23	1.99
61088051--61088078	13	2.2	13	100	0	56	57	14	0	28	1.38
61090595--61090812	47	4.7	45	77	9	217	22	29	19	27	1.98
61090540--61090813	94	2.9	92	73	12	281	22	28	19	29	1.98
61091137--61091194	30	1.9	30	89	0	89	31	24	12	32	1.91
61092469--61092536	26	2.6	26	95	4	120	14	29	27	27	1.95
61096180--61096641	48	9.6	48	94	0	798	34	8	27	29	1.86
61096814--61096916	37	2.8	37	95	0	179	23	19	32	25	1.98
61100766--61100979	46	4.6	47	80	8	156	23	30	17	28	1.97
61100821--61101027	46	4.4	47	78	11	185	22	29	19	28	1.98
61105914--61106049	40	3.4	40	81	5	159	27	25	15	31	1.96
61106456--61106521	29	2.3	29	81	5	71	30	25	1	42	1.64
61107839--61107889	27	1.9	26	84	4	66	25	21	19	33	1.97
61110346--61111322	488	2.0	488	99	0	1945	36	11	16	36	1.85
61112404--61112556	42	3.6	42	85	4	193	32	12	23	32	1.92
61115663--61115709	19	2.5	19	100	0	94	27	27	25	19	1.99
61117153--61117216	31	2.1	31	100	0	128	15	20	34	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61118227--61118258	13	2.4	14	85	15	50	28	6	0	65	1.16
61119944--61120098	39	4.0	40	87	4	192	19	21	27	31	1.97
61131201--61131285	30	2.8	29	75	3	80	41	24	14	20	1.89
61131400--61131537	52	2.7	53	86	4	192	23	24	14	36	1.93
61140553--61140658	27	3.9	27	82	3	124	30	24	11	33	1.90
61140699--61141038	27	12.9	27	74	8	225	25	21	16	36	1.94
61140770--61140819	26	1.9	26	87	0	73	26	12	14	48	1.78
61140736--61140942	80	2.6	81	77	6	215	25	20	15	38	1.92
61140700--61140910	107	2.0	107	80	0	242	23	22	16	37	1.93
61140894--61141034	75	1.9	76	86	7	207	29	21	15	34	1.94
61141751--61141790	14	2.9	14	89	10	57	42	10	17	30	1.82
61148414--61148490	24	3.2	24	88	1	109	48	2	11	37	1.54
61148943--61148999	20	2.8	20	86	0	69	22	33	26	17	1.96
61153764--61153924	51	3.2	51	95	0	268	29	23	14	32	1.94
61154025--61154075	25	2.0	25	96	0	93	50	7	0	41	1.31
61157876--61157906	8	3.9	8	100	0	62	74	0	0	25	0.82
61169192--61169255	31	2.0	32	96	3	121	31	4	25	39	1.76
61170734--61170786	26	2.0	26	85	7	72	37	22	15	24	1.92
61175883--61176037	24	6.4	24	79	14	151	25	23	18	32	1.97
61175883--61176062	72	2.5	72	79	11	188	26	23	18	31	1.97
61176207--61176270	19	3.3	19	78	4	74	26	6	26	40	1.79
61177430--61177462	16	2.0	17	94	5	59	42	0	24	33	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61178410--61178445	18	2.0	19	89	10	58	36	13	27	22	1.92
61180300--61180343	19	2.4	19	85	7	56	50	0	9	40	1.34
61187310--61187355	23	1.9	25	91	8	78	26	23	17	32	1.97
61187310--61187368	23	2.4	23	86	8	73	25	22	22	30	1.99
61190695--61190760	18	3.7	18	74	11	64	34	18	25	21	1.96
61191019--61191062	23	2.0	22	86	13	63	40	18	15	25	1.90
61191102--61191164	27	2.3	27	91	0	99	22	20	17	39	1.92
61191156--61191283	27	4.7	27	85	0	166	37	14	14	33	1.87
61195106--61195327	27	8.3	27	79	4	198	27	21	13	37	1.91
61195100--61195327	54	4.2	54	83	4	237	28	21	13	36	1.91
61198720--61198760	19	2.2	19	90	0	64	56	2	12	29	1.49
61208561--61208964	47	8.6	47	93	1	657	32	8	29	29	1.87
61211092--61211166	38	2.0	38	86	5	107	30	18	26	24	1.98
61211220--61211561	40	8.6	40	90	0	533	25	21	27	25	2.00
61211546--61211577	16	2.0	16	100	0	64	25	31	25	18	1.98
61215502--61215811	50	6.3	49	84	12	397	31	7	29	32	1.85
61215502--61215807	145	2.1	147	86	10	421	31	7	28	32	1.85
61215508--61215811	47	6.2	49	82	13	328	31	7	29	31	1.85
61215502--61215867	101	3.7	97	82	10	374	31	8	29	30	1.87
61217981--61218055	38	2.0	38	86	5	107	30	18	26	24	1.98
61218107--61218298	39	4.9	40	90	5	281	23	22	27	26	2.00
61218107--61218320	79	2.8	79	88	9	304	23	21	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61218231--61218411	90	2.0	91	87	11	266	24	22	25	27	2.00
61218321--61218496	40	4.6	40	82	12	215	25	20	27	26	1.99
61218321--61218496	79	2.3	76	85	5	221	25	20	27	26	1.99
61222079--61222437	47	7.6	47	92	2	549	32	8	29	29	1.87
61229684--61230171	27	18.1	27	85	5	594	28	22	8	40	1.83
61229685--61230181	108	4.6	108	89	1	721	28	22	8	40	1.84
61230183--61230315	27	4.9	27	85	0	167	36	16	20	27	1.94
61230517--61230598	27	3.1	26	89	5	119	19	23	20	36	1.95
61230911--61230983	27	2.7	27	83	6	78	19	24	19	36	1.94
61231123--61231265	6	23.8	6	79	11	159	20	16	13	48	1.80
61231098--61231265	30	5.4	30	84	9	219	20	16	14	48	1.80
61231123--61231242	36	3.5	36	83	13	180	20	16	14	48	1.81
61231098--61231286	30	6.1	30	81	9	191	20	16	14	48	1.81
61233274--61233705	27	16.0	27	85	3	512	27	21	9	41	1.84
61233714--61233908	27	7.2	27	83	3	216	35	16	20	27	1.94
61233714--61233895	54	3.4	54	84	3	249	34	17	19	28	1.95
61234109--61234190	27	3.1	26	87	5	110	20	23	19	36	1.95
61234501--61234574	27	2.8	25	76	17	69	17	22	20	39	1.92
61234690--61234900	6	34.8	6	74	14	175	20	17	14	47	1.82
61234690--61234900	109	1.9	109	92	1	352	20	17	14	47	1.82
61234690--61234900	30	7.4	30	79	13	248	20	17	14	47	1.82
61244006--61244274	46	5.6	50	77	13	212	24	29	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61244589--61244614	13	2.0	13	100	0	52	30	0	7	61	1.24
61246134--61246419	40	7.2	40	95	0	484	23	21	27	27	1.99
61255093--61255150	29	2.0	30	83	10	75	29	3	5	62	1.33
61255535--61255746	106	2.0	106	82	2	255	38	7	11	41	1.70
61257228--61257288	32	1.9	31	83	12	79	37	0	0	62	0.96
61257223--61257286	33	1.9	34	81	15	80	35	0	0	64	0.94
61257957--61258004	15	3.0	17	77	20	50	41	0	0	58	0.98
61257975--61258016	22	1.9	22	85	9	59	38	0	0	61	0.96
61258393--61258422	13	2.3	13	100	0	60	40	0	16	43	1.48
61258431--61258465	13	2.7	13	86	0	52	25	11	25	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290