genome.fa.s7.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  98  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30024629--30024675	20	2.3	20	92	7	78	36	10	19	34	1.86
30024725--30024797	26	2.8	26	91	0	110	28	24	20	26	1.99
30024956--30024988	14	2.4	14	100	0	66	15	21	15	48	1.81
30024994--30025057	31	2.1	31	87	0	92	37	15	23	23	1.93
30035788--30035831	6	7.2	6	92	2	52	15	25	0	59	1.37
30035789--30035831	12	3.5	12	87	3	59	16	25	0	58	1.38
30035788--30035830	18	2.3	19	88	4	61	16	25	0	58	1.38
30038327--30038353	8	3.4	8	100	0	54	40	0	11	48	1.39
30039749--30039926	27	6.6	27	82	3	187	29	27	15	27	1.96
30039770--30039925	82	1.9	81	85	3	215	28	27	16	27	1.97
30047837--30048013	27	6.6	27	82	4	187	28	27	15	27	1.96
30047858--30048012	82	1.9	80	85	5	213	28	27	16	27	1.97
30066058--30066104	19	2.5	19	76	10	51	70	6	2	21	1.20
30071279--30071325	9	5.0	9	82	10	58	19	8	0	72	1.10
30072874--30072929	25	2.4	24	85	8	71	35	0	5	58	1.21
30075971--30076149	41	4.4	41	89	3	227	21	21	21	35	1.96
30080980--30081026	26	2.0	25	84	16	64	68	2	6	23	1.24
30083045--30083104	26	2.3	26	88	0	84	21	6	3	68	1.28
30085122--30085280	27	5.9	26	81	7	104	34	22	24	18	1.96
30085140--30085283	54	2.7	54	91	2	227	34	24	25	16	1.96
30092832--30092990	27	5.9	26	83	8	176	35	20	23	20	1.96
30092832--30092994	54	3.0	54	90	2	240	35	20	23	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30097597--30097653	10	5.7	10	75	8	53	84	3	7	5	0.87
30097608--30097653	19	2.4	19	85	7	58	84	0	8	6	0.77
30110998--30111076	35	2.2	37	84	13	112	37	10	15	36	1.81
30110998--30111069	18	3.9	19	85	10	114	37	11	13	37	1.81
30111048--30111092	23	2.0	22	82	4	54	40	4	17	37	1.70
30111358--30111393	17	2.1	17	90	10	56	33	0	0	66	0.92
30119501--30120075	78	7.4	78	87	1	803	33	18	23	25	1.97
30120041--30120204	89	1.9	88	82	7	208	31	17	23	28	1.97
30120236--30120530	78	3.8	78	86	1	403	32	18	23	26	1.97
30119782--30120646	454	1.9	452	86	3	1245	32	17	23	26	1.97
30120470--30120684	45	4.8	45	76	6	220	30	16	27	25	1.96
30120454--30120681	89	2.6	92	81	9	251	31	16	27	24	1.96
30120470--30120733	89	2.9	87	72	13	221	31	16	26	25	1.96
30120966--30121063	35	2.7	37	87	12	150	37	10	16	35	1.82
30120966--30121056	19	4.9	19	92	8	161	37	10	15	36	1.83
30120966--30121079	19	5.8	22	87	10	96	36	9	15	37	1.81
30121346--30121380	18	2.0	17	88	5	52	31	0	0	68	0.90
30138286--30138319	10	3.4	10	87	0	50	14	52	5	26	1.64
30139254--30139683	214	2.0	214	99	0	851	26	30	17	25	1.97
30140839--30140918	39	2.1	39	95	0	142	30	8	13	47	1.73
30149714--30150035	96	3.4	95	82	2	333	25	28	17	27	1.98
30149715--30150048	48	7.0	48	75	4	271	26	29	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30156316--30156398	17	4.9	17	74	0	67	34	7	16	40	1.76
30156404--30156467	17	3.8	17	74	0	56	29	6	10	53	1.60
30159823--30159882	30	2.0	30	100	0	120	33	6	6	53	1.53
30161756--30161795	21	1.9	21	100	0	80	27	20	42	10	1.83
30161742--30161802	21	3.0	21	85	2	79	27	21	39	11	1.88
30163018--30163248	48	4.8	48	81	2	248	26	30	17	25	1.97
30163004--30163235	96	2.4	96	85	2	295	27	29	17	26	1.97
30164965--30165002	19	2.0	19	85	10	51	55	21	2	21	1.56
30166520--30166837	100	3.2	99	77	6	300	30	20	15	33	1.93
30170827--30171057	52	4.6	51	77	10	208	33	23	16	26	1.96
30180790--30180834	20	2.1	22	88	8	67	73	4	0	22	1.01
30206354--30206524	93	1.8	93	93	2	299	28	27	21	22	1.99
30206346--30206521	46	3.8	46	77	14	200	29	27	21	22	1.99
30213196--30213245	26	1.9	26	95	0	91	32	28	18	22	1.97
30216502--30216566	29	2.2	29	94	0	112	18	32	29	20	1.96
30221973--30222013	20	2.0	20	90	4	64	17	2	9	70	1.25
30224537--30224703	86	1.9	86	91	2	273	40	4	16	38	1.67
30226104--30226133	2	15.0	2	100	0	60	50	50	0	0	1.00
30226417--30226475	30	1.9	31	82	3	75	45	23	0	30	1.53
30227367--30227409	3	14.3	3	100	0	86	0	32	0	67	0.91
30227930--30227975	21	2.2	21	84	0	56	58	21	10	8	1.58
30242484--30242778	154	1.9	150	84	11	397	41	4	10	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30242484--30242778	153	1.9	148	85	10	400	41	4	10	43	1.59
30244434--30244493	17	3.6	16	77	18	61	61	0	1	36	1.06
30244804--30244844	17	2.4	18	76	15	52	58	0	4	36	1.20
30256302--30256432	39	3.4	39	89	0	190	29	20	26	23	1.99
30256304--30256459	78	2.0	77	82	3	188	29	21	26	22	1.99
30259793--30259860	35	1.9	35	84	0	91	25	22	11	41	1.87
30261393--30261770	187	2.0	187	98	0	738	35	21	5	36	1.78
30261877--30262035	43	3.7	43	77	7	155	28	27	18	25	1.98
30261877--30262046	86	2.0	85	84	7	220	30	27	17	25	1.97
30264258--30264373	43	2.7	43	78	6	137	28	23	18	30	1.97
30264392--30264488	40	2.4	41	87	1	142	32	27	15	23	1.95
30267090--30267137	20	2.2	22	75	21	55	52	0	2	45	1.12
30267099--30267143	20	2.2	21	92	4	74	53	2	2	42	1.25
30270045--30270098	27	2.0	27	100	0	108	51	18	7	22	1.70
30271205--30271281	39	2.0	39	84	0	100	45	12	5	36	1.65
30271270--30271317	20	2.4	20	86	6	62	54	16	0	29	1.43
30271231--30271326	19	4.9	18	74	13	75	50	12	2	35	1.52
30271408--30271469	28	2.2	28	82	2	72	67	4	8	19	1.34
30271828--30271892	21	3.2	20	82	8	69	38	32	6	23	1.79
30271853--30271907	26	2.1	26	89	0	83	38	32	5	23	1.78
30271828--30271905	21	3.8	20	78	11	61	38	33	6	21	1.79
30276384--30276772	114	3.5	109	80	9	353	26	2	14	55	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30279731--30279780	25	2.0	25	84	0	64	40	14	20	26	1.90
30283873--30283960	27	3.0	29	70	18	76	44	1	1	53	1.15
30297656--30298002	177	2.0	177	90	0	550	34	17	8	38	1.81
30303278--30303453	47	3.7	46	79	8	185	23	27	18	30	1.98
30303377--30303497	47	2.6	46	81	13	140	24	26	18	30	1.98
30306113--30306160	19	2.4	19	86	13	62	79	0	20	0	0.74
30306112--30306161	7	6.9	7	80	19	50	78	0	22	0	0.76
30306113--30306161	25	1.9	26	87	4	73	79	0	20	0	0.73
30306113--30306153	13	3.2	12	83	10	55	78	0	21	0	0.76
30306487--30306534	22	2.1	22	85	11	62	45	0	25	29	1.53
30321410--30321628	47	4.7	47	80	7	216	28	17	27	25	1.98
30321410--30321628	93	2.3	93	82	4	253	28	17	27	25	1.98
30333669--30333710	18	2.4	17	85	14	59	33	2	0	64	1.07
30333918--30333942	9	2.8	9	100	0	50	88	0	0	12	0.53
30339730--30339770	21	2.0	21	90	0	64	24	12	7	56	1.61
30340008--30340048	20	2.0	21	86	13	59	51	0	26	21	1.48
30351882--30352000	20	5.9	20	68	3	78	36	23	20	19	1.95
30352070--30352152	38	2.2	38	82	6	107	44	12	19	24	1.84
30357973--30358052	40	2.0	40	85	9	110	46	3	7	42	1.50
30358205--30358248	20	2.2	20	91	0	70	40	0	0	59	0.98
30359997--30360062	26	2.6	25	81	13	66	65	3	9	22	1.36
30360487--30360774	3	97.3	3	70	10	130	60	1	8	29	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30360600--30360749	59	2.5	59	80	7	171	63	1	7	28	1.29
30362220--30362272	28	1.9	28	85	11	74	49	1	7	41	1.42
30374912--30374976	10	6.5	10	77	13	71	58	0	4	36	1.19
30374912--30374979	30	2.3	30	84	5	93	60	0	4	35	1.17
30383926--30384081	47	3.3	47	83	4	201	33	9	29	27	1.89
30384152--30384236	40	2.2	40	86	2	118	17	21	31	29	1.96
30387667--30387751	37	2.3	36	84	9	102	44	1	3	50	1.26
30390979--30391018	19	2.1	19	95	0	71	45	5	7	42	1.54
30392467--30392517	18	2.7	20	79	17	63	25	1	3	68	1.17
30392467--30392526	20	3.1	19	78	9	59	30	1	3	65	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290