genome.fa.s7.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  149  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47633339--47633417	20	4.0	20	68	6	61	13	25	17	43	1.86
47647309--47647359	26	2.0	26	84	0	66	41	17	3	37	1.68
47648150--47648193	13	3.6	13	82	17	58	40	47	2	9	1.48
47648218--47648264	6	7.5	6	86	9	58	76	6	0	17	0.98
47648284--47648342	9	6.6	9	84	0	82	27	8	18	45	1.78
47652695--47652727	16	2.0	17	88	5	50	24	3	3	69	1.16
47652956--47653011	9	6.9	9	76	17	52	58	0	3	37	1.15
47652940--47653007	31	2.2	31	94	2	118	60	0	7	32	1.24
47654059--47654165	43	2.5	43	95	0	187	26	19	30	23	1.98
47654059--47654192	43	3.1	41	82	8	144	27	20	27	24	1.99
47654244--47654326	31	2.6	31	80	3	85	61	19	3	15	1.48
47657924--47657993	28	2.5	28	88	9	99	31	27	14	27	1.95
47664179--47664284	40	2.7	40	74	14	101	26	26	22	24	2.00
47672201--47672306	40	2.7	40	76	8	108	26	27	22	23	2.00
47676302--47676371	28	2.5	28	88	9	99	31	27	14	27	1.95
47681586--47681749	9	17.6	9	72	12	89	39	0	12	47	1.46
47681586--47681780	70	2.8	70	88	2	275	38	1	12	47	1.48
47681854--47681909	15	3.8	15	78	21	73	53	0	0	46	1.00
47682086--47682153	24	2.8	24	89	8	111	44	7	20	27	1.78
47682245--47683146	369	2.4	368	98	1	1736	38	10	14	36	1.81
47687368--47687399	15	2.1	15	94	0	55	31	9	0	59	1.29
47687819--47687868	18	2.7	18	87	3	73	48	2	2	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47688181--47688411	41	5.6	41	91	2	374	25	29	20	23	1.99
47688397--47688506	41	2.7	41	82	2	132	23	22	20	32	1.98
47693755--47693779	13	1.9	13	100	0	50	8	12	16	64	1.49
47698159--47698263	53	2.0	53	86	0	147	21	24	15	38	1.92
47698171--47698354	55	3.4	53	80	2	170	21	23	17	36	1.94
47698358--47698429	36	2.0	36	97	0	135	27	25	9	37	1.87
47716555--47716582	13	2.2	13	100	0	56	14	14	7	64	1.48
47719811--47719855	17	2.7	18	80	13	60	51	13	8	26	1.70
47721671--47721750	39	2.1	39	82	0	97	30	16	17	36	1.92
47728055--47728106	13	3.9	13	76	14	61	32	7	23	36	1.83
47728761--47728822	13	4.8	13	76	7	63	40	24	4	30	1.76
47731161--47731204	21	2.1	21	100	0	88	38	0	18	43	1.50
47734750--47734808	30	1.9	30	86	3	82	47	3	20	28	1.66
47741268--47741294	7	3.9	7	100	0	54	44	0	11	44	1.39
47741683--47741780	22	4.2	25	81	11	93	19	22	17	40	1.91
47748192--47748348	43	3.7	43	74	9	133	26	22	25	25	2.00
47748192--47748340	42	3.5	43	73	14	119	27	22	24	25	2.00
47748189--47748348	85	1.9	86	84	3	216	26	22	25	25	2.00
47751850--47751895	20	2.3	20	81	3	58	26	17	28	28	1.98
47764982--47765144	46	3.5	46	91	1	238	21	28	19	30	1.98
47774451--47774944	47	10.4	47	89	3	665	26	29	9	34	1.88
47774472--47774944	190	2.5	190	91	2	781	26	29	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47778425--47778732	40	7.7	40	89	0	447	25	28	21	23	1.99
47778786--47778860	38	2.0	38	86	5	107	24	26	18	30	1.98
47781287--47781822	47	11.3	47	90	3	758	26	29	9	33	1.89
47781308--47781821	190	2.7	190	94	1	890	26	29	10	33	1.90
47784538--47784700	47	3.5	47	72	11	172	31	30	17	20	1.96
47784492--47784756	93	2.8	93	88	1	397	29	28	19	22	1.98
47784484--47784752	46	5.8	46	71	12	219	30	28	19	22	1.98
47790017--47790075	27	2.2	26	81	3	73	30	8	33	27	1.86
47791773--47791830	30	2.0	29	86	3	80	44	15	8	31	1.76
47792665--47792699	15	2.3	15	95	0	61	25	11	25	37	1.90
47814090--47814183	31	3.0	31	93	0	170	30	14	17	37	1.90
47814525--47814635	23	4.8	23	77	11	102	36	14	21	27	1.92
47817305--47817479	46	3.8	46	78	13	196	29	29	20	20	1.97
47817314--47817483	93	1.8	93	93	0	295	28	30	20	20	1.98
47823105--47823270	46	3.6	46	75	13	169	30	29	19	20	1.97
47823113--47823282	93	1.8	93	89	0	268	28	30	20	20	1.98
47823205--47823290	46	1.9	45	83	4	111	31	30	17	20	1.96
47824626--47824699	22	3.2	22	70	10	76	40	21	9	28	1.84
47824611--47824707	47	2.1	47	98	0	185	40	20	8	30	1.82
47825563--47825786	43	5.4	43	81	10	261	29	20	18	31	1.96
47825622--47825688	33	2.0	33	91	0	107	32	17	17	31	1.94
47825580--47825737	76	2.1	76	90	0	244	31	17	17	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47835420--47835588	55	3.1	55	79	8	168	21	25	17	36	1.94
47842117--47842196	27	3.0	27	84	0	88	32	18	20	28	1.96
47842190--47842239	26	1.9	26	95	0	91	38	18	10	34	1.84
47842188--47842441	54	4.7	54	74	7	203	41	17	8	33	1.79
47842188--47842522	27	12.4	27	73	9	175	40	17	8	33	1.81
47842760--47842925	41	4.0	41	88	0	251	21	21	30	27	1.98
47843313--47843358	22	2.1	22	91	0	74	10	17	28	43	1.82
47846044--47846108	27	2.4	27	78	0	85	35	16	20	27	1.94
47846090--47846486	27	14.7	27	76	6	225	39	20	9	30	1.84
47846090--47846458	54	6.8	54	78	5	284	40	20	9	30	1.83
47846116--47846376	107	2.4	108	81	6	280	39	21	9	29	1.86
47846142--47846483	134	2.5	136	76	7	322	39	20	9	30	1.84
47846724--47846846	41	3.0	41	84	0	174	21	21	29	27	1.99
47847833--47847879	17	2.8	17	81	9	51	44	6	12	36	1.68
47849327--47849544	27	8.1	27	76	11	92	38	22	11	27	1.89
47849392--47849544	81	1.9	81	86	2	218	41	22	7	28	1.80
47849417--47849809	27	14.6	27	80	6	287	40	19	10	29	1.84
47850056--47850256	41	4.9	41	90	0	294	21	22	29	26	1.99
47850401--47850451	22	2.3	23	83	10	70	23	25	19	31	1.98
47850401--47850459	22	2.6	22	79	12	59	20	23	22	33	1.97
47850588--47850634	22	2.1	22	84	7	60	8	21	31	38	1.83
47853307--47853537	55	4.4	54	76	12	203	22	24	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47864501--47864537	19	1.9	19	94	0	65	48	0	18	32	1.49
47873502--47873601	47	2.1	47	90	0	155	24	19	29	28	1.98
47879107--47879229	47	2.6	47	85	0	174	21	21	28	28	1.99
47882652--47882739	24	3.6	24	76	11	81	25	21	17	36	1.94
47882728--47882804	23	3.4	23	82	5	86	27	22	19	31	1.98
47887815--47887999	79	2.3	82	83	7	229	24	27	22	24	2.00
47887796--47887999	40	5.1	40	81	8	229	24	27	22	25	2.00
47895729--47895913	79	2.3	82	83	7	229	24	27	22	24	2.00
47895710--47895913	40	5.1	40	81	8	229	24	27	22	25	2.00
47898371--47898400	11	2.7	11	89	0	51	43	20	10	26	1.83
47910334--47910518	79	2.3	81	83	7	227	24	22	27	24	2.00
47910335--47910518	40	4.6	40	82	9	207	25	22	27	24	2.00
47910387--47910551	79	2.1	79	83	6	201	26	21	27	24	1.99
47915241--47915503	40	6.6	40	87	3	316	24	20	28	26	1.99
47915280--47915538	80	3.3	80	84	3	238	25	20	28	25	1.99
47921426--47921609	40	4.6	39	83	6	203	25	22	27	25	2.00
47921426--47921609	78	2.3	80	81	9	207	25	22	27	25	2.00
47925131--47925298	16	10.7	15	67	24	80	26	4	1	67	1.19
47925133--47925276	8	15.7	9	67	24	54	27	4	0	68	1.13
47925207--47925296	27	3.4	27	92	1	146	23	3	3	70	1.18
47925178--47925298	54	2.3	54	84	4	156	25	3	2	68	1.17
47925123--47925268	39	3.5	42	76	20	123	28	4	0	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47925131--47925298	10	17.0	10	69	22	99	26	4	1	67	1.19
47925131--47925276	23	6.9	20	71	17	91	27	4	0	67	1.13
47925195--47925296	6	16.0	6	70	18	64	23	2	2	70	1.15
47932338--47932362	12	2.1	12	100	0	50	48	8	0	44	1.32
47932440--47932499	21	2.9	21	97	2	113	33	10	26	30	1.89
47933306--47933384	5	14.2	6	75	19	57	46	16	2	34	1.60
47933302--47933347	20	2.2	21	88	7	76	45	19	0	34	1.51
47933640--47933668	14	2.1	14	100	0	58	27	13	6	51	1.66
47935163--47935190	13	2.2	13	100	0	56	46	0	7	46	1.30
47935358--47935401	19	2.2	21	88	8	65	34	2	0	63	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290