Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  285  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91189620--91189714
40
2.3
40
78
5
102
24
15
15
44
1.86
91190540--91190579
15
2.7
15
88
0
62
17
20
27
35
1.95
91191184--91191208
11
2.3
11
100
0
50
60
0
24
16
1.36
91191255--91191311
29
1.9
30
85
3
80
17
28
35
19
1.94
91196653--91196760
26
4.2
26
90
0
171
32
8
23
36
1.84
91199853--91199960
54
2.0
54
100
0
216
48
9
16
25
1.76
91200127--91200197
26
2.7
26
91
0
115
30
4
2
61
1.29
91203607--91203707
30
3.4
30
94
0
175
27
49
3
18
1.65
91203607--91203751
30
4.8
29
83
5
164
26
47
4
21
1.69
91204305--91204418
25
4.5
25
71
12
90
32
5
3
58
1.37
91204280--91204391
29
4.0
29
74
14
85
33
4
2
58
1.32
91204346--91204413
26
2.6
26
77
9
75
32
5
5
55
1.48
91204399--91204477
23
3.8
20
75
11
61
31
7
6
54
1.54
91204587--91204634
16
3.1
15
90
6
69
31
2
2
64
1.16
91204587--91204638
8
6.5
8
82
8
61
30
1
1
65
1.14
91212926--91213098
69
2.5
67
83
6
188
28
15
22
32
1.95
91212988--91213487
132
3.9
124
77
9
445
28
15
21
35
1.93
91213375--91213600
77
2.9
76
82
4
285
29
16
21
32
1.95
91213714--91213851
71
1.9
71
95
0
249
34
16
17
31
1.92
91213629--91214011
158
2.4
158
83
7
463
30
16
19
33
1.94
91213858--91214095
75
3.2
72
86
5
325
27
16
21
35
1.94
91214075--91214125
14
3.6
14
77
12
50
21
11
1
64
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91214089--91214122
16
2.1
16
94
0
59
20
8
0
70
1.13
91214197--91214448
77
3.3
76
90
3
382
24
19
22
34
1.96
91215120--91215294
30
5.8
30
89
1
219
26
48
4
20
1.69
91215775--91215904
23
5.5
23
68
19
81
34
3
2
59
1.28
91215841--91215988
25
5.9
25
73
11
97
33
6
4
56
1.45
91215868--91215915
14
3.4
14
75
16
53
33
2
0
64
1.05
91215875--91215936
30
2.1
29
84
3
79
33
4
3
58
1.36
91215969--91216024
19
2.8
20
75
8
60
32
7
5
55
1.50
91216132--91216187
8
7.0
8
82
17
55
30
0
1
67
1.01
91216142--91216183
16
2.6
16
88
11
68
30
0
2
66
1.04
91216132--91216187
24
2.3
24
84
6
78
30
0
1
67
1.01
91217149--91217176
3
9.3
3
100
0
56
32
0
0
67
0.91
91225183--91225230
19
2.5
19
93
0
78
29
22
29
18
1.98
91227115--91227198
41
2.0
41
93
4
143
33
17
2
46
1.61
91231898--91231942
20
2.3
20
88
3
65
28
15
26
28
1.96
91234386--91234410
12
2.1
12
100
0
50
68
8
8
16
1.38
91239786--91239830
13
3.3
14
77
22
51
60
0
4
35
1.17
91242154--91242185
2
16.0
2
100
0
64
50
0
50
0
1.00
91249151--91249179
14
2.0
15
93
6
51
27
27
10
34
1.89
91249864--91249957
49
1.9
49
95
0
170
31
9
14
43
1.78
91251588--91251620
15
2.1
16
88
5
50
63
0
0
36
0.95
91251587--91251639
23
2.3
23
83
6
63
58
1
3
35
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91251739--91251777
18
2.2
18
86
9
53
61
0
0
38
0.96
91252070--91252115
22
2.1
22
88
4
67
28
2
2
67
1.14
91256450--91256505
22
2.5
22
75
13
60
10
8
7
73
1.26
91256704--91256744
16
2.6
17
77
14
52
58
0
0
41
0.98
91256748--91256773
10
2.6
10
100
0
52
53
15
0
30
1.42
91262741--91262767
7
3.9
7
100
0
54
44
40
0
14
1.46
91269723--91269763
18
2.3
19
87
8
59
26
39
12
21
1.89
91270355--91270413
25
2.5
24
91
5
93
37
1
0
61
1.07
91270536--91270595
31
1.9
31
86
0
84
50
10
18
21
1.76
91270859--91270884
2
13.0
2
100
0
52
50
0
0
50
1.00
91283367--91283476
47
2.3
47
80
6
125
37
21
14
26
1.92
91284239--91284333
4
22.8
4
78
8
91
4
26
3
66
1.25
91290213--91290315
47
2.2
47
80
3
127
37
22
14
25
1.92
91291086--91291174
4
21.8
4
77
4
79
5
24
3
66
1.29
91293485--91293521
17
2.1
18
85
14
51
67
0
10
21
1.21
91302208--91302296
43
2.1
43
100
0
178
24
23
13
38
1.91
91311003--91311041
16
2.4
16
84
12
53
41
10
5
43
1.61
91319710--91319741
11
3.1
11
82
17
50
25
0
0
75
0.81
91319801--91319854
22
2.5
22
82
11
58
25
1
3
68
1.16
91322994--91323052
31
1.9
31
89
0
91
35
6
10
47
1.64
91325150--91325195
19
2.5
17
83
13
56
71
0
4
23
1.03
91326691--91326747
31
1.9
28
86
10
78
57
5
7
29
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91327574--91328158
197
3.0
193
88
3
888
28
10
12
48
1.74
91332641--91332676
18
2.1
17
89
5
54
30
0
0
69
0.89
91332643--91332718
20
3.9
19
73
13
57
32
2
0
64
1.07
91332704--91332793
40
2.2
41
84
2
110
24
2
10
63
1.37
91337645--91337690
17
2.4
19
82
17
60
58
0
0
41
0.98
91344098--91344161
24
2.7
23
82
2
74
65
3
0
31
1.08
91344115--91344162
15
3.3
15
77
13
55
68
4
0
27
1.07
91354760--91354818
22
2.7
21
74
7
55
64
0
5
30
1.15
91356527--91356579
27
2.0
27
88
0
79
47
1
1
49
1.23
91356613--91356673
17
3.4
17
76
12
68
49
4
1
44
1.33
91356995--91357019
13
1.9
13
100
0
50
32
24
8
36
1.84
91359069--91359109
18
2.3
18
95
0
73
19
14
24
41
1.89
91361630--91361816
93
2.0
93
98
0
365
29
9
16
44
1.78
91361850--91361904
3
18.3
3
100
0
110
32
0
0
67
0.91
91375186--91375814
312
2.0
312
88
0
945
19
25
15
39
1.90
91386228--91386314
6
14.5
6
92
0
120
21
33
14
29
1.94
91386229--91386311
30
2.8
30
94
0
148
22
33
15
27
1.95
91401073--91401117
23
2.0
22
83
8
56
66
2
24
6
1.27
91406118--91406189
29
2.4
30
84
9
78
43
8
19
29
1.80
91406679--91406706
4
7.0
4
100
0
56
50
25
0
25
1.50
91408256--91408343
45
2.0
45
97
0
167
32
3
34
29
1.74
91410967--91411155
99
1.9
98
92
3
317
26
8
11
52
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91411573--91411621
21
2.1
21
82
14
53
67
2
0
30
1.02
91411714--91411761
24
2.0
24
91
0
78
33
12
31
22
1.91
91413550--91413726
47
3.8
47
79
12
211
21
19
28
29
1.98
91416599--91416627
3
9.7
3
100
0
58
34
0
0
65
0.93
91417923--91417976
19
2.7
22
83
13
64
51
3
0
44
1.19
91418646--91418698
20
2.6
21
79
8
56
28
0
5
66
1.15
91422992--91423038
21
2.2
22
92
3
78
21
19
38
21
1.94
91423975--91424044
30
2.3
30
80
4
79
50
2
5
41
1.41
91429473--91429509
12
3.0
13
84
11
51
29
40
18
10
1.85
91435395--91435435
19
2.1
20
95
4
75
24
12
34
29
1.91
91435661--91435701
17
2.5
17
96
4
75
36
0
19
43
1.51
91451218--91451262
23
2.0
23
82
8
56
37
11
13
37
1.80
91458832--91458876
23
2.0
23
82
8
56
37
11
13
37
1.80
91461287--91461410
62
2.0
63
95
1
223
45
19
5
29
1.73
91463405--91463445
20
2.0
20
95
0
73
56
0
0
43
0.99
91463449--91463635
27
6.2
32
64
23
91
47
1
1
49
1.18
91463411--91463580
93
1.9
89
91
4
277
50
1
0
48
1.11
91463398--91463594
93
2.2
88
80
15
247
47
1
0
50
1.14
91470241--91470393
41
3.7
42
91
1
220
17
21
16
43
1.88
91470252--91470414
62
2.7
60
80
6
150
17
22
17
42
1.89
91470241--91470398
21
7.6
21
77
5
151
17
22
17
43
1.88
91474060--91474091
5
6.6
5
92
7
57
81
0
0
18
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91474061--91474091
9
3.3
9
95
4
53
80
0
0
19
0.71
91478508--91478540
5
6.6
5
100
0
66
81
0
0
18
0.68
91480705--91480738
14
2.4
14
90
0
50
29
0
2
67
1.05
91480705--91480738
17
2.0
17
88
0
50
29
0
2
67
1.05
91484537--91484580
23
1.9
23
85
0
61
11
11
4
72
1.25
91485601--91485646
18
2.5
18
83
13
58
71
2
23
2
1.08
91485973--91486037
26
2.7
23
73
17
60
40
1
4
53
1.31
91488418--91488498
40
2.0
40
100
0
162
39
9
9
40
1.72
91494905--91494934
11
2.6
12
89
10
53
70
0
0
30
0.88
91495601--91495643
19
2.3
18
84
4
50
27
2
13
55
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290