Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  148  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47157915--47157969
26
2.1
26
90
6
85
78
0
7
14
0.96
47159523--47159599
23
3.4
22
77
15
68
71
2
6
19
1.20
47185902--47185968
18
3.4
19
73
20
66
49
1
1
47
1.19
47185894--47185939
16
2.8
16
86
6
56
43
0
4
52
1.21
47189255--47189358
12
9.0
12
70
18
53
53
2
2
40
1.30
47189262--47189356
17
5.6
18
71
22
64
52
3
3
41
1.33
47191665--47192455
395
2.0
396
87
2
1151
30
16
16
36
1.92
47192974--47193050
10
7.6
10
74
8
66
31
0
67
1
0.99
47193071--47193117
10
5.1
10
80
19
50
34
0
63
2
1.06
47193069--47193129
26
2.4
25
84
15
72
31
0
65
3
1.09
47193339--47193410
35
2.1
35
89
5
110
55
4
12
27
1.55
47204683--47204805
61
2.0
61
100
0
246
36
8
16
39
1.78
47214077--47214147
18
3.8
19
74
22
53
45
5
14
35
1.68
47214828--47214853
6
4.3
6
100
0
52
0
19
46
34
1.50
47226698--47226850
47
3.3
44
76
14
148
26
22
28
22
1.99
47226696--47226949
93
2.7
94
80
9
275
27
22
27
22
1.99
47226698--47226950
49
5.3
47
75
12
198
27
22
28
22
1.99
47231759--47231796
20
2.0
20
94
5
69
44
21
2
31
1.66
47234470--47234515
24
1.9
24
100
0
92
32
15
8
43
1.77
47236070--47236241
79
2.2
78
83
7
213
25
22
28
24
1.99
47236017--47236239
40
5.6
39
79
7
207
25
21
27
24
1.99
47236097--47236274
79
2.2
80
82
3
200
25
22
28
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47243588--47243757
79
2.1
78
82
7
209
25
21
28
24
1.99
47243533--47243790
40
6.5
38
76
11
191
26
21
27
24
1.99
47243533--47243755
40
5.6
39
78
7
198
26
21
27
24
1.99
47243613--47243790
79
2.2
80
82
3
200
25
22
28
23
1.99
47246901--47247003
40
2.5
39
83
7
125
26
21
26
26
1.99
47246891--47247048
41
3.9
41
74
12
155
23
20
27
27
1.99
47260432--47260481
26
1.9
26
84
15
68
48
0
4
48
1.20
47266924--47267003
41
2.0
41
100
0
160
18
10
20
51
1.74
47285954--47286014
28
2.2
27
82
2
68
50
9
11
27
1.70
47289689--47289778
44
2.0
44
100
0
180
28
21
8
41
1.83
47299888--47299936
20
2.5
20
83
3
64
51
4
2
42
1.32
47299909--47299945
19
1.9
19
88
0
56
56
0
0
43
0.99
47299934--47299982
25
2.0
24
84
7
64
42
0
2
55
1.11
47303592--47303638
21
2.2
22
92
3
78
21
38
19
21
1.94
47309009--47309048
14
2.9
13
82
10
53
30
0
15
55
1.41
47312568--47312616
25
2.0
25
83
0
62
32
8
20
38
1.82
47315512--47315561
21
2.4
21
89
0
73
44
22
14
20
1.86
47320768--47320861
48
2.0
48
84
0
125
45
9
13
30
1.76
47326458--47326496
6
6.5
6
96
0
69
35
12
0
51
1.40
47327568--47327611
18
2.4
18
84
0
70
27
27
15
29
1.96
47336213--47336569
46
7.7
46
95
0
534
38
15
24
21
1.92
47338814--47338846
16
2.1
16
100
0
66
48
27
12
12
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47341045--47341083
12
3.2
12
92
0
60
58
0
7
33
1.26
47341049--47341084
3
12.0
3
87
0
54
61
0
5
33
1.19
47342547--47342594
24
2.0
24
88
4
71
0
14
0
85
0.60
47342555--47342586
16
1.9
17
93
6
57
0
15
0
84
0.63
47342559--47342593
8
4.5
8
89
3
54
0
11
0
88
0.51
47348863--47348896
13
2.6
13
100
0
68
35
0
5
58
1.22
47349283--47349337
17
2.9
19
75
22
62
38
1
5
54
1.34
47349283--47349358
11
6.8
11
69
19
50
39
1
3
55
1.27
47352143--47352351
46
4.5
45
78
9
181
27
19
29
23
1.98
47356203--47356290
6
14.3
6
68
17
56
47
12
19
20
1.81
47356212--47356290
31
2.5
31
87
0
113
48
11
20
20
1.80
47356737--47356950
27
8.0
27
82
4
218
24
21
18
35
1.95
47356740--47356950
81
2.6
81
87
3
293
24
21
18
36
1.95
47356941--47357257
27
11.7
27
77
9
105
32
7
20
39
1.81
47356997--47357336
81
4.2
79
81
5
331
31
8
19
40
1.82
47357049--47357336
27
10.7
27
83
4
323
32
8
19
40
1.81
47357913--47357953
17
2.4
17
91
0
64
21
26
21
29
1.99
47362897--47362963
34
2.0
34
100
0
134
38
16
17
26
1.91
47364778--47364834
29
2.0
29
100
0
114
50
14
7
28
1.68
47368028--47368077
23
2.2
23
92
0
82
14
16
32
38
1.88
47369588--47369736
42
3.5
41
80
10
156
29
24
20
25
1.99
47369577--47369735
43
3.7
43
77
10
173
29
25
20
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47373216--47373256
21
2.0
21
85
0
55
29
31
24
14
1.95
47375231--47375294
33
1.9
33
93
0
110
51
9
17
21
1.73
47375244--47375299
18
3.3
18
65
14
55
46
8
21
23
1.79
47385181--47385217
17
2.1
18
90
5
58
51
2
2
43
1.30
47393162--47393432
136
2.1
129
86
6
366
15
13
15
56
1.68
47393202--47393496
136
2.2
129
82
7
349
16
14
14
54
1.72
47393753--47393849
30
3.2
30
92
2
158
28
6
31
32
1.82
47396078--47396148
32
2.3
29
81
13
79
38
5
15
40
1.71
47401014--47401038
7
3.6
7
100
0
50
88
0
12
0
0.53
47407600--47407630
16
1.9
16
93
0
53
9
9
9
70
1.33
47419223--47419346
61
2.0
62
95
1
223
29
26
9
33
1.88
47431227--47431320
47
1.9
50
85
6
131
40
3
2
54
1.28
47431266--47431322
20
2.9
20
78
19
66
38
5
3
52
1.41
47432468--47432500
16
2.1
16
100
0
66
30
6
18
45
1.73
47456204--47456231
11
2.5
11
100
0
56
82
0
0
17
0.68
47458627--47458663
18
2.1
18
94
0
65
48
8
0
43
1.32
47461016--47461191
49
3.6
48
78
6
178
25
27
19
27
1.99
47461218--47461381
48
3.5
47
76
6
163
23
26
20
29
1.98
47461212--47461386
94
1.9
93
86
4
253
22
26
20
30
1.98
47461220--47461426
94
2.2
94
82
5
240
22
27
20
28
1.99
47464229--47464264
18
2.0
18
88
0
54
25
22
13
38
1.91
47466463--47466639
46
3.8
46
79
3
149
29
17
25
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47466650--47466776
49
2.6
50
84
2
159
29
20
27
22
1.98
47476774--47476955
49
3.8
48
81
5
179
25
29
19
26
1.98
47476774--47476955
98
1.9
97
84
3
249
25
29
19
26
1.98
47476980--47477277
46
6.3
48
71
9
213
25
26
19
28
1.99
47476980--47477280
94
3.2
94
89
1
381
25
26
19
28
1.99
47482748--47482827
15
5.4
15
76
7
74
11
18
12
57
1.64
47485197--47485371
46
3.8
46
78
17
191
22
20
28
28
1.99
47485193--47485364
92
1.9
93
91
1
283
23
20
28
27
1.99
47488212--47488333
22
5.3
22
62
21
61
25
29
11
33
1.91
47488184--47488830
47
13.6
47
94
1
935
28
29
9
33
1.88
47490288--47490404
57
2.1
57
96
1
218
22
22
9
46
1.80
47539136--47539171
17
2.1
17
94
0
63
41
25
5
27
1.77
47546539--47546614
27
2.8
27
73
0
71
35
17
19
27
1.94
47550009--47550100
27
3.5
26
78
3
85
38
17
20
23
1.93
47561920--47562009
27
3.3
27
83
10
121
40
18
23
17
1.92
47562006--47562064
27
2.2
27
93
0
100
30
15
22
32
1.94
47562014--47562066
27
2.0
27
100
0
106
30
15
22
32
1.94
47563494--47563549
26
2.2
26
90
0
85
33
25
8
32
1.87
47566308--47566402
49
1.9
49
89
0
145
17
18
18
44
1.87
47566308--47566426
49
2.4
49
81
2
141
20
17
18
43
1.88
47570837--47570934
50
1.9
52
89
6
157
47
8
0
43
1.32
47571021--47571096
28
2.8
28
81
2
82
56
5
14
23
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47571072--47571129
28
2.0
29
83
9
75
60
12
12
15
1.59
47572716--47572781
30
2.2
30
97
2
125
46
9
10
33
1.70
47573911--47574095
76
2.4
76
83
4
232
35
18
21
24
1.95
47588657--47588698
17
2.4
18
80
4
50
57
2
2
38
1.25
47594413--47594588
68
2.6
68
76
13
150
21
28
17
33
1.95
47598716--47598779
27
2.3
27
84
7
76
42
0
0
57
0.98
47602417--47602536
43
2.8
42
79
7
134
30
17
24
28
1.97
47605698--47605748
21
2.4
21
93
0
84
13
21
45
19
1.85
47611174--47611201
14
2.0
14
100
0
56
50
0
0
50
1.00
47622690--47622723
17
2.0
17
100
0
68
29
17
23
29
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290