genome.fa.s7.2.7.7.80.10.50.1000.228.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  228  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74372096--74372892	244	3.3	244	97	0	1497	35	18	13	33	1.90
74378373--74378416	21	2.1	21	86	0	61	22	20	54	2	1.56
74382222--74382267	16	2.8	17	75	18	53	71	2	10	15	1.23
74383112--74383148	13	2.7	14	91	4	58	75	0	18	5	0.99
74383112--74383153	13	3.1	13	86	10	57	73	0	21	4	1.01
74383267--74383304	12	3.2	12	88	0	58	57	2	26	13	1.49
74386285--74386334	26	1.9	26	88	8	75	16	26	16	42	1.88
74395549--74395646	34	2.7	35	83	12	110	28	25	19	26	1.99
74395569--74395649	34	2.4	34	87	2	117	30	22	19	27	1.98
74397261--74397354	42	2.2	43	83	5	111	34	25	14	25	1.94
74404253--74404298	20	2.3	21	82	14	62	26	17	28	28	1.98
74411333--74411363	13	2.3	14	94	5	55	48	6	0	45	1.28
74412121--74412159	9	4.1	9	87	9	51	38	0	0	61	0.96
74412117--74412154	19	2.1	18	90	5	58	39	0	0	60	0.97
74415225--74415274	10	5.0	10	81	13	59	68	2	8	22	1.26
74418608--74418698	28	3.2	28	87	4	130	21	24	21	31	1.98
74418608--74418723	56	2.1	55	80	9	128	20	24	20	34	1.97
74425178--74425210	12	2.6	13	85	9	50	9	45	0	45	1.35
74426273--74426337	28	2.3	28	89	5	96	35	27	7	29	1.85
74426443--74426533	28	3.2	28	87	4	130	20	24	21	32	1.98
74426443--74426558	56	2.1	55	80	9	128	19	24	20	35	1.96
74431667--74431700	17	2.0	17	94	0	59	38	17	14	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74443171--74443395	40	5.7	40	87	5	280	25	21	26	26	2.00
74451128--74451313	40	4.7	40	82	7	218	24	22	27	25	2.00
74451181--74451346	80	2.1	79	82	7	194	26	20	27	25	1.99
74459909--74460200	38	7.6	38	89	3	433	22	22	25	29	1.99
74460215--74460346	45	3.0	45	82	9	150	24	18	28	28	1.98
74465635--74465965	116	2.9	116	93	0	549	22	23	25	29	1.99
74465651--74465965	38	8.2	38	92	1	522	21	24	25	28	1.99
74465979--74466110	45	3.0	45	85	9	159	24	19	28	27	1.99
74467747--74467812	32	2.1	32	100	0	132	43	18	9	28	1.80
74468583--74468636	16	3.8	16	70	27	57	48	3	9	38	1.53
74468749--74468805	7	7.7	7	77	11	60	28	50	1	19	1.57
74468749--74468802	15	3.6	15	73	7	56	29	48	1	20	1.60
74468776--74468857	37	2.2	37	80	4	94	30	43	2	23	1.66
74468860--74468904	22	2.1	21	84	12	56	37	35	0	26	1.57
74468867--74469107	14	17.4	14	66	14	79	44	30	0	24	1.54
74468858--74468939	7	11.6	7	76	12	51	41	36	0	21	1.54
74468875--74468967	29	2.9	34	81	12	90	44	35	0	20	1.52
74468886--74468924	20	2.0	20	85	10	53	43	41	0	15	1.46
74468912--74469104	7	26.9	7	70	5	98	46	29	0	23	1.53
74468953--74469081	29	4.7	29	65	22	73	46	27	0	26	1.53
74469646--74469741	40	2.4	40	86	5	115	30	20	21	27	1.98
74469420--74469708	114	2.6	111	83	4	339	32	18	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74469905--74470029	40	3.1	40	83	3	153	24	23	22	29	1.99
74475099--74475143	21	2.1	22	88	8	67	40	0	2	57	1.11
74475536--74475560	11	2.3	11	100	0	50	32	0	0	68	0.90
74475524--74475601	30	2.7	28	79	13	77	38	2	1	57	1.20
74475534--74475604	20	3.6	19	76	16	65	39	2	1	56	1.23
74477898--74477995	42	2.3	43	78	5	110	23	16	28	31	1.96
74487256--74487728	27	17.5	27	77	5	223	39	20	8	31	1.83
74487256--74487728	54	8.8	52	74	6	313	39	20	8	31	1.83
74487256--74487728	81	5.8	80	75	6	355	39	20	8	31	1.83
74487729--74487913	27	6.9	27	87	0	271	35	19	20	24	1.96
74490700--74490913	47	4.6	47	92	0	329	32	8	29	28	1.87
74492479--74492543	22	3.0	22	84	8	87	20	21	23	35	1.96
74492702--74492803	27	3.8	27	85	5	116	19	23	20	36	1.95
74492702--74492803	54	1.9	53	83	2	132	19	23	20	36	1.95
74492940--74493051	31	3.6	31	87	1	161	22	14	14	49	1.79
74492963--74493071	6	17.8	6	71	20	75	22	15	14	47	1.81
74501272--74501311	21	2.0	21	90	5	64	22	30	37	10	1.87
74502218--74502428	48	4.4	49	73	12	174	23	28	19	27	1.99
74502350--74502520	46	3.7	46	77	11	161	23	28	18	29	1.98
74502258--74502525	46	5.8	45	71	17	149	23	28	19	28	1.98
74506542--74506585	23	2.0	22	86	4	61	22	11	11	54	1.68
74511293--74511412	48	2.5	48	83	2	134	30	20	25	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74513230--74513279	19	2.6	19	90	0	82	16	28	42	14	1.86
74514006--74514084	22	3.5	22	78	13	70	35	13	22	27	1.93
74521596--74521670	19	3.9	19	72	16	57	24	2	5	68	1.24
74524355--74524449	25	3.8	25	84	0	127	23	22	20	34	1.96
74532855--74532996	52	2.8	50	88	8	200	26	30	14	28	1.95
74534540--74534712	46	3.7	46	84	7	199	28	19	27	23	1.98
74536839--74537254	27	15.9	26	75	12	250	38	18	9	33	1.84
74536830--74537267	53	8.4	54	76	8	302	38	18	9	33	1.83
74536963--74537266	80	3.8	81	79	4	312	38	19	9	32	1.83
74536963--74537266	27	11.4	27	80	5	269	38	19	9	32	1.83
74536926--74537266	107	3.2	108	79	2	375	38	18	9	33	1.83
74553387--74553417	16	1.9	16	93	0	53	16	6	6	70	1.29
74561376--74561496	28	4.2	29	83	5	140	24	33	13	28	1.93
74566156--74566224	28	2.5	28	97	0	129	27	36	11	24	1.90
74569526--74569700	52	3.5	50	84	6	212	29	30	12	28	1.92
74569694--74569746	23	2.3	23	96	0	97	28	22	20	28	1.99
74570774--74570820	13	3.7	13	91	5	78	36	6	14	42	1.72
74575971--74576028	30	2.0	29	86	3	80	18	36	17	27	1.94
74579729--74579893	42	3.9	40	75	14	136	30	26	14	28	1.95
74583360--74583465	29	3.7	29	94	1	178	29	30	14	26	1.95
74583526--74583559	18	1.9	18	94	5	61	23	41	23	11	1.87
74589234--74589267	16	2.1	16	88	5	50	8	0	14	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74599603--74599770	46	3.6	45	78	12	189	29	28	19	22	1.98
74599604--74599774	93	1.8	93	93	0	297	29	28	19	21	1.98
74610981--74611074	6	15.3	6	72	16	77	50	14	14	20	1.78
74610995--74611074	31	2.6	31	93	0	133	50	15	15	20	1.79
74611206--74611307	27	3.8	26	85	5	114	36	21	23	18	1.95
74611465--74611529	22	3.0	22	80	8	78	33	23	23	20	1.97
74611956--74612229	27	10.3	27	88	4	378	24	20	21	33	1.97
74611957--74612229	107	2.6	107	86	5	374	24	20	20	34	1.97
74612105--74612247	27	5.3	26	89	5	117	25	15	23	35	1.94
74611956--74612229	80	3.4	81	88	5	387	24	20	21	33	1.97
74612159--74612260	27	3.8	27	87	3	118	27	10	23	38	1.88
74612314--74612475	27	6.0	27	90	1	245	39	7	22	30	1.81
74612276--74612461	80	2.3	81	83	2	223	38	8	21	32	1.83
74612485--74612632	27	5.6	27	78	8	151	27	11	21	39	1.88
74612485--74612632	53	2.8	54	77	7	151	27	11	21	39	1.88
74614585--74614678	6	15.3	6	72	16	68	50	14	14	20	1.78
74614599--74614678	31	2.6	31	93	0	133	50	15	15	20	1.79
74614605--74614675	25	2.8	25	79	10	65	49	15	15	19	1.80
74614810--74614911	27	3.8	27	85	5	125	35	21	24	18	1.96
74614810--74614911	54	1.9	53	85	2	141	35	21	24	18	1.96
74615069--74615133	22	3.0	22	80	8	78	33	23	23	20	1.97
74615579--74615970	27	14.5	27	86	2	450	26	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74615873--74616374	27	18.7	27	77	7	183	33	8	20	37	1.84
74615963--74616166	81	2.5	81	83	1	239	36	6	22	33	1.81
74616019--74616188	54	3.1	54	91	0	268	38	6	23	31	1.80
74616019--74616188	81	2.1	81	93	0	286	38	6	23	31	1.80
74616200--74616374	53	3.3	52	79	10	169	30	9	18	41	1.82
74618897--74618931	15	2.3	15	100	0	70	62	0	20	17	1.32
74618922--74618957	15	2.4	15	95	0	63	47	13	22	16	1.82
74619365--74619397	17	1.9	17	93	0	57	21	12	6	60	1.53
74620853--74620998	40	3.7	40	82	7	172	25	22	26	25	2.00
74620854--74621017	40	4.1	40	80	7	163	25	22	26	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290