genome.fa.s7.2.7.7.80.10.50.1000.254.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  254  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82454731--82454755	13	1.9	13	100	0	50	4	56	16	24	1.57
82454887--82455966	42	25.5	42	82	4	1072	15	32	33	19	1.93
82454887--82455966	127	8.5	129	82	5	1118	15	32	33	19	1.93
82454887--82455943	169	6.2	168	83	4	1191	15	32	33	18	1.93
82455653--82455721	23	3.2	23	62	16	56	21	31	28	17	1.96
82454887--82455966	85	12.8	86	81	5	1077	15	32	33	19	1.93
82455721--82455999	43	6.5	42	79	7	249	14	27	36	20	1.92
82460979--82461048	35	2.0	35	83	5	88	22	22	11	42	1.85
82466201--82466270	35	2.0	35	85	0	95	24	22	10	42	1.84
82469058--82469083	5	5.2	5	100	0	52	19	38	19	23	1.93
82469743--82469859	58	2.0	59	91	1	191	33	22	20	23	1.97
82470236--82470309	24	3.1	24	86	1	96	9	33	33	22	1.87
82470496--82471192	42	16.5	42	81	5	733	15	32	34	18	1.92
82470496--82471164	85	7.9	84	85	3	694	15	32	33	17	1.92
82470496--82471164	127	5.3	127	82	5	739	15	32	33	17	1.92
82470480--82471192	169	4.2	168	84	3	765	15	32	33	18	1.93
82480337--82480560	40	5.6	40	85	7	278	25	22	27	25	2.00
82480336--82480593	119	2.2	119	81	6	292	25	22	26	25	2.00
82486159--82486280	58	2.1	59	86	4	167	32	22	19	25	1.97
82486900--82487681	42	18.5	41	77	9	268	16	33	32	18	1.93
82486916--82487670	85	8.9	85	81	5	798	16	33	32	17	1.92
82486915--82487685	127	6.1	128	81	6	793	15	33	32	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82492156--82492214	22	2.7	21	80	12	73	32	3	20	44	1.68
82492690--82492724	5	7.0	5	90	0	52	14	40	25	20	1.90
82492690--82492723	10	3.4	10	95	0	59	11	41	26	20	1.87
82492582--82492941	186	2.0	180	87	5	521	19	27	26	26	1.99
82493295--82493348	24	2.2	24	86	0	72	12	40	31	14	1.84
82493382--82493502	58	2.1	59	92	1	199	30	23	21	23	1.99
82493894--82493947	24	2.2	24	100	0	108	7	42	37	12	1.72
82494130--82495072	42	22.5	42	83	6	990	15	32	33	18	1.92
82494155--82495072	168	5.5	168	85	4	1148	15	32	33	17	1.92
82494804--82494870	22	3.2	22	65	18	61	20	34	28	16	1.95
82494870--82495108	127	1.9	128	85	2	338	15	27	37	19	1.92
82494130--82495072	85	11.2	85	84	5	1034	15	32	33	18	1.92
82494856--82495108	85	3.0	85	83	7	230	15	28	36	19	1.93
82495482--82495521	17	2.4	17	83	8	55	10	35	25	30	1.88
82502273--82502311	5	7.8	5	91	0	51	7	41	30	20	1.80
82502273--82502313	15	2.7	15	92	0	64	9	39	29	21	1.86
82502691--82502742	26	2.0	27	92	3	88	28	25	17	28	1.97
82502972--82503092	58	2.1	59	92	1	199	30	23	21	23	1.99
82503488--82503539	24	2.2	24	100	0	104	7	44	34	13	1.72
82508545--82508584	19	2.0	20	86	13	57	50	0	7	42	1.30
82508538--82508835	133	2.3	133	87	4	439	43	3	12	40	1.58
82509467--82509764	133	2.2	133	93	2	528	43	4	11	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82508078--82509935	929	2.0	918	95	1	3367	37	12	12	38	1.81
82509886--82510039	83	1.9	83	97	0	290	29	25	11	33	1.91
82517261--82517365	47	2.2	47	96	0	192	34	7	30	27	1.85
82524595--82524642	25	1.9	25	86	0	69	31	22	16	29	1.96
82524678--82524724	20	2.3	20	92	7	78	36	10	19	34	1.86
82524774--82524911	26	5.4	26	89	3	174	28	22	22	26	1.99
82527122--82527356	101	2.4	99	84	4	285	26	13	25	33	1.93
82532289--82532358	21	3.2	21	62	18	52	35	25	15	22	1.94
82532771--82532803	16	2.1	16	100	0	66	45	12	0	42	1.41
82539674--82539698	13	1.9	13	100	0	50	24	12	8	56	1.62
82540588--82540678	45	2.0	45	89	0	137	38	24	13	24	1.91
82540607--82540682	21	3.5	21	65	16	55	40	26	11	21	1.87
82542482--82542572	45	2.0	45	89	0	137	38	24	12	25	1.90
82546177--82546219	18	2.4	18	84	0	59	53	11	0	34	1.37
82548390--82548433	22	2.0	22	86	0	61	40	0	18	40	1.50
82556464--82556579	43	2.7	43	85	2	153	29	22	18	29	1.98
82562479--82562545	9	7.0	9	76	18	64	37	0	17	44	1.49
82563235--82563266	5	6.6	5	92	7	57	81	0	0	18	0.70
82563236--82563266	9	3.3	9	95	4	53	80	0	0	19	0.71
82567685--82567716	5	6.6	5	92	7	57	81	0	0	18	0.70
82567686--82567716	9	3.3	9	95	4	53	80	0	0	19	0.71
82570677--82570781	43	2.4	43	91	0	174	29	14	22	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82572326--82572373	18	2.7	18	77	3	53	35	4	14	45	1.64
82572706--82572756	18	2.9	17	74	25	61	31	0	29	39	1.57
82572885--82573061	41	4.4	41	87	4	225	27	21	18	32	1.96
82573416--82573484	7	9.3	7	74	16	50	46	33	1	18	1.58
82573415--82573461	22	2.1	22	84	7	60	44	34	0	21	1.52
82574060--82574351	41	7.1	41	81	1	273	24	19	19	36	1.95
82575663--82575815	42	3.5	44	71	15	131	33	26	16	24	1.96
82578375--82578463	25	3.6	25	69	11	83	41	19	21	17	1.90
82583422--82583573	18	8.5	18	88	4	202	40	11	13	35	1.80
82583422--82583573	35	4.3	35	87	5	216	40	11	13	35	1.80
82583422--82583573	70	2.1	72	91	3	245	40	11	13	35	1.80
82585258--82585296	20	1.9	21	89	5	62	30	20	5	43	1.73
82594993--82595215	40	5.6	40	84	7	278	25	28	21	24	1.99
82594995--82595209	119	1.8	119	85	8	303	26	27	21	25	1.99
82594993--82595216	79	2.8	79	83	6	247	25	28	21	24	1.99
82602351--82602571	40	5.6	40	83	9	260	25	28	21	24	1.99
82602351--82602572	79	2.8	79	82	11	251	26	27	21	24	1.99
82605424--82605462	6	6.2	6	82	11	51	76	5	0	17	0.96
82605484--82605569	9	9.6	9	87	7	95	27	8	19	44	1.79
82617782--82617841	30	2.0	30	86	0	84	31	25	5	38	1.77
82620081--82620170	27	3.3	28	87	6	123	40	16	10	33	1.82
82620076--82620197	54	2.2	54	80	7	131	37	18	9	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82620182--82620387	27	7.6	27	88	0	250	29	21	7	40	1.81
82620365--82620529	27	6.1	27	82	6	140	40	21	7	30	1.81
82620183--82620388	81	2.5	81	85	1	279	30	21	7	40	1.81
82620365--82620504	54	2.6	54	86	4	201	40	22	7	30	1.81
82620122--82620521	81	4.9	81	75	3	230	33	22	8	36	1.84
82620635--82620712	27	2.9	27	77	11	88	37	21	19	21	1.95
82621514--82621611	26	3.8	26	91	1	162	26	23	22	27	1.99
82621756--82621847	42	2.2	42	90	0	139	29	15	21	33	1.94
82621871--82621949	31	2.5	31	91	0	131	30	17	25	26	1.97
82625436--82625475	16	2.6	16	92	4	64	67	2	10	20	1.31
82628929--82628977	25	2.0	25	83	0	62	42	10	14	32	1.79
82634324--82634568	48	5.1	48	84	2	285	26	17	29	26	1.97
82634333--82634557	96	2.3	96	86	1	317	26	16	30	27	1.97
82634333--82634602	48	5.6	47	84	3	281	27	17	28	27	1.97
82637695--82637747	27	2.0	27	85	3	72	28	11	20	39	1.87
82647343--82647392	25	2.0	25	96	0	91	34	8	22	36	1.83
82655907--82656091	41	4.5	41	77	5	194	24	28	13	34	1.93
82655907--82656091	82	2.3	82	82	1	219	24	28	13	34	1.93
82656558--82656598	13	3.4	13	80	19	61	34	0	14	51	1.43
82672475--82672603	41	3.1	41	82	0	168	17	18	25	37	1.93
82672608--82672705	41	2.4	41	79	6	110	20	16	24	38	1.92
82672543--82672670	67	1.9	67	86	0	184	19	14	24	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82672500--82672696	108	1.8	108	83	2	261	19	16	24	39	1.91
82675612--82675686	36	2.1	36	97	0	141	45	14	9	30	1.77
82678910--82678958	18	2.7	18	90	0	71	40	16	22	20	1.91
82679274--82679370	27	3.7	26	78	12	108	40	18	15	25	1.90
82679265--82679383	27	4.4	26	70	14	80	40	17	15	26	1.90
82679466--82679516	17	2.9	18	85	8	70	21	41	25	11	1.87
82681851--82681971	57	2.1	57	81	4	145	24	23	6	45	1.76
82683616--82683787	93	1.8	93	94	0	308	27	29	20	21	1.98
82683608--82683783	46	3.8	46	80	10	214	28	28	20	21	1.98
82688180--82688402	47	4.8	48	77	8	176	22	31	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290