genome.fa.s7.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  146  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46505497--46505548	25	2.1	25	85	3	70	30	17	19	32	1.95
46505504--46505573	25	2.8	25	88	0	95	27	21	24	27	1.99
46505777--46506022	27	9.1	27	86	1	332	26	20	17	34	1.95
46505780--46506025	81	3.0	81	86	0	368	26	20	17	35	1.94
46506007--46506213	80	2.6	80	85	3	229	31	9	19	39	1.83
46506063--46506228	27	6.2	27	88	1	226	33	7	20	38	1.81
46506063--46506229	81	2.1	80	90	1	262	33	7	20	38	1.81
46506207--46506517	27	11.5	27	84	0	361	40	8	20	30	1.81
46506097--46506501	81	5.0	81	83	3	404	39	7	20	33	1.81
46506206--46506509	81	3.8	81	88	2	423	40	7	20	30	1.81
46506532--46506673	27	5.3	27	80	5	162	30	11	19	39	1.86
46512117--46512210	46	2.0	46	100	0	188	39	17	6	37	1.75
46512597--46512737	53	2.6	55	82	4	162	22	22	18	36	1.95
46525138--46525168	3	10.7	3	93	6	55	29	0	0	70	0.87
46528037--46528065	13	2.2	13	100	0	58	31	0	13	55	1.39
46541184--46541282	43	2.3	43	87	0	144	31	20	25	23	1.98
46560221--46560290	28	2.5	28	85	0	95	35	11	25	27	1.90
46567118--46567180	28	2.2	28	82	0	81	33	14	26	25	1.94
46567299--46567427	43	3.0	43	77	10	129	27	18	27	26	1.98
46567404--46567508	40	2.6	40	73	1	102	27	19	27	25	1.98
46580159--46580207	9	5.7	9	76	23	52	44	0	32	22	1.53
46588785--46588837	24	2.2	24	93	0	88	32	3	41	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46590249--46590359	27	4.2	26	81	5	123	18	23	20	36	1.95
46590249--46590359	54	2.1	53	86	1	150	18	23	20	36	1.95
46596584--46596636	24	2.2	24	96	0	97	32	3	43	20	1.70
46598028--46598111	27	3.1	27	91	1	125	14	23	25	36	1.92
46603277--46603301	13	1.9	13	100	0	50	48	20	0	32	1.50
46610372--46610468	48	2.0	48	97	0	185	19	19	17	43	1.88
46616019--46616173	44	3.7	42	76	8	138	28	20	21	30	1.98
46616059--46616166	41	2.6	43	78	10	125	27	21	21	29	1.98
46616006--46616166	85	1.9	86	83	7	213	28	19	21	31	1.97
46628283--46628329	18	2.6	18	82	0	58	10	25	6	57	1.56
46628302--46628328	6	4.5	6	100	0	54	14	29	0	55	1.40
46628324--46628348	12	2.1	12	100	0	50	32	12	16	40	1.84
46631847--46631896	23	2.2	23	100	0	100	30	24	4	42	1.73
46642239--46642272	12	2.9	11	87	12	50	47	41	0	11	1.40
46648771--46648823	20	2.8	18	78	10	61	69	1	5	22	1.19
46648771--46648823	9	5.7	9	73	8	52	69	1	5	22	1.19
46649026--46649057	17	1.9	16	93	6	55	53	3	0	43	1.16
46649283--46649335	27	2.0	27	96	0	97	60	5	7	26	1.46
46656140--46656164	6	4.2	6	100	0	50	0	16	0	84	0.63
46663242--46663459	46	4.6	47	78	13	216	23	27	18	29	1.98
46663191--46663459	94	2.8	94	81	9	305	23	28	19	28	1.98
46667006--46667119	57	2.0	57	100	0	228	64	5	8	21	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46667121--46667167	17	2.6	17	83	6	58	80	2	0	17	0.80
46667136--46667174	17	2.3	17	86	0	51	84	2	0	12	0.72
46673265--46673335	19	3.7	19	75	0	61	35	26	19	18	1.95
46674687--46674722	16	2.2	17	95	5	65	16	5	2	75	1.12
46682271--46682392	46	2.6	46	81	5	136	26	22	14	36	1.93
46685750--46685925	46	3.8	46	76	16	175	21	18	29	31	1.96
46688930--46689087	41	3.8	41	81	7	149	31	14	18	35	1.91
46693994--46694079	43	2.0	43	95	0	154	38	4	13	43	1.66
46694413--46694482	28	2.5	28	100	0	140	31	11	27	30	1.91
46698869--46698898	15	2.0	15	100	0	60	20	13	26	40	1.89
46702787--46702973	40	4.6	40	87	5	234	24	16	25	34	1.95
46705474--46705756	41	6.9	41	88	0	370	32	24	23	19	1.97
46706173--46706221	24	2.0	24	100	0	98	53	0	4	42	1.20
46711177--46711285	43	2.5	43	91	2	175	23	17	26	32	1.97
46715883--46716154	46	5.7	49	78	9	244	25	18	30	24	1.98
46715936--46716154	99	2.3	92	83	9	248	25	18	31	24	1.98
46719991--46720025	18	1.9	18	94	0	61	48	8	20	22	1.76
46723328--46723363	17	2.1	17	89	0	54	72	0	2	25	0.98
46724208--46724238	12	2.6	12	94	0	53	6	29	41	22	1.78
46731009--46731056	25	1.9	25	82	0	60	41	16	4	37	1.68
46737927--46737981	28	2.1	24	81	18	58	27	20	21	30	1.98
46737947--46738066	25	4.8	25	88	4	136	27	22	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46737972--46738066	25	3.8	25	94	0	154	27	23	24	25	2.00
46738271--46738415	27	5.4	27	85	4	195	23	21	19	35	1.96
46738340--46738565	27	8.4	27	78	5	120	28	11	20	38	1.88
46738425--46738575	54	2.8	54	85	2	187	29	7	19	42	1.80
46738448--46738589	27	5.3	27	82	3	142	29	7	22	40	1.80
46738448--46738616	54	3.1	54	83	3	180	30	7	23	39	1.81
46738568--46738697	27	4.8	27	90	0	188	39	7	21	31	1.82
46738449--46738711	81	3.2	80	75	5	206	33	7	21	37	1.82
46742272--46742447	96	1.8	96	82	6	228	27	18	28	25	1.98
46742320--46742451	47	2.8	48	82	5	160	23	19	31	25	1.98
46743574--46743615	22	2.0	22	90	4	68	16	40	21	21	1.91
46750674--46750731	30	1.9	30	89	0	89	22	24	31	22	1.99
46752174--46752295	46	2.6	47	81	5	138	26	23	14	35	1.94
46755674--46755905	23	10.1	23	81	5	281	31	25	19	24	1.98
46755672--46755905	69	3.4	69	92	0	369	31	25	19	24	1.98
46758500--46758557	6	9.2	6	76	16	55	75	1	6	15	1.09
46758500--46758551	18	2.8	18	82	11	61	75	1	7	15	1.12
46758593--46758618	3	8.7	3	100	0	52	0	0	69	30	0.89
46760201--46760233	16	2.0	17	88	5	50	57	6	6	30	1.47
46760784--46760829	20	2.3	20	84	0	56	26	36	21	15	1.93
46760795--46760834	20	2.0	20	90	0	62	20	35	27	17	1.95
46765418--46765552	50	2.9	47	80	12	161	25	17	31	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46765423--46765602	99	1.9	94	85	10	247	27	18	28	26	1.98
46765426--46765602	49	3.7	50	80	11	167	27	18	28	25	1.98
46767562--46767641	40	2.0	40	100	0	160	22	22	30	25	1.99
46772891--46773044	27	5.7	26	78	10	114	33	13	26	25	1.93
46778257--46778324	30	2.3	30	94	0	118	23	36	22	17	1.94
46778969--46779082	58	2.0	58	96	0	210	40	16	7	35	1.78
46779297--46779433	48	2.9	48	86	0	166	25	22	25	26	2.00
46779746--46779805	29	2.1	29	96	0	111	43	18	6	31	1.76
46782791--46782872	41	2.0	41	95	0	146	18	30	25	25	1.98
46787459--46787508	15	3.3	15	85	0	73	56	14	18	12	1.68
46797571--46797633	31	2.0	31	93	0	108	23	23	15	36	1.94
46797841--46797948	25	4.4	24	90	4	155	27	22	19	30	1.98
46797852--46797946	25	3.9	25	93	2	158	28	22	21	28	1.99
46797997--46798063	20	3.3	20	87	0	107	32	19	10	37	1.86
46801931--46802148	40	5.5	40	91	3	325	25	28	22	22	1.99
46804267--46804429	45	3.7	44	89	4	247	23	20	26	29	1.99
46806280--46806386	48	2.2	48	83	0	124	30	22	18	28	1.97
46809640--46809701	30	2.1	30	96	0	115	30	20	12	35	1.91
46811873--46811911	16	2.4	16	86	0	51	46	20	20	12	1.83
46812010--46812064	19	2.9	19	89	2	76	27	18	36	18	1.94
46812131--46812234	29	3.6	28	81	2	109	26	14	29	28	1.95
46814450--46814505	27	2.1	27	89	0	85	28	19	33	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46816696--46816782	29	3.0	29	89	1	122	26	17	29	26	1.97
46816709--46816788	29	2.8	29	92	0	124	26	18	30	25	1.98
46819458--46819567	31	3.5	31	97	0	202	26	25	18	30	1.98
46819591--46819682	42	2.2	42	88	0	130	35	20	13	30	1.91
46819815--46819950	26	5.3	26	85	3	172	27	24	20	27	1.99
46819815--46819950	52	2.7	50	87	10	197	27	24	20	27	1.99
46820000--46820086	20	4.3	20	92	2	140	31	18	10	40	1.84
46820122--46820169	25	1.9	25	91	0	78	27	12	22	37	1.90
46821125--46821326	55	3.7	53	74	10	147	36	7	20	34	1.82
46820862--46821326	27	17.2	27	74	7	147	33	9	20	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290