genome.fa.s7.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  134  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42147888--42147997	55	2.0	55	100	0	220	30	3	25	40	1.73
42155670--42155805	51	2.7	51	77	0	155	39	6	12	41	1.69
42167256--42167465	47	4.6	48	77	14	221	30	22	14	31	1.94
42167215--42167420	85	2.4	84	93	0	349	30	22	15	31	1.95
42167340--42167470	48	2.7	49	88	3	187	31	24	14	29	1.95
42167256--42167494	133	1.8	132	84	2	327	30	23	15	31	1.95
42174383--42174588	35	5.9	35	77	7	186	28	8	20	42	1.81
42180805--42180933	46	2.8	46	85	2	170	20	17	30	31	1.96
42192329--42192378	25	2.0	25	88	7	75	48	8	4	40	1.51
42207631--42207803	46	3.7	46	78	10	199	21	20	27	30	1.98
42207628--42207798	93	1.8	93	92	0	288	21	20	28	29	1.98
42208028--42208065	19	2.0	20	85	15	53	36	0	23	39	1.55
42228368--42228423	22	2.5	22	76	0	67	41	19	23	16	1.90
42230710--42230744	14	2.6	13	86	8	52	45	17	2	34	1.63
42232400--42232453	25	2.1	26	89	3	83	51	44	1	1	1.22
42233569--42233607	7	6.0	7	88	11	57	30	0	0	69	0.89
42233751--42233815	29	2.3	28	84	12	80	38	3	4	53	1.37
42234421--42234457	3	12.3	3	88	0	56	32	5	0	62	1.18
42236839--42236872	13	2.6	13	90	9	52	70	0	5	23	1.09
42236926--42237042	15	7.4	14	70	24	65	70	4	2	23	1.18
42236939--42237040	9	10.5	10	70	18	56	69	3	2	23	1.19
42236980--42237033	25	2.2	24	87	9	74	70	3	0	25	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42240841--42240898	23	2.4	24	80	5	64	70	1	1	25	1.06
42245116--42245172	25	2.2	27	78	12	66	70	8	8	12	1.35
42246116--42246174	28	2.1	29	81	9	68	44	3	23	28	1.70
42246668--42246816	43	3.5	44	83	5	171	30	16	19	34	1.93
42246667--42246833	43	3.9	42	82	4	167	29	14	20	34	1.93
42254200--42254347	43	3.4	43	80	5	129	28	14	23	33	1.94
42255548--42255718	46	3.7	46	80	4	200	27	21	29	21	1.98
42255642--42255764	46	2.7	44	82	7	113	26	20	30	23	1.99
42258031--42258139	37	2.9	37	93	0	182	26	30	19	23	1.98
42258286--42258420	48	2.8	48	94	0	234	28	28	8	34	1.86
42258390--42258677	47	6.1	47	90	0	432	26	29	11	32	1.91
42258350--42258677	94	3.5	94	90	2	473	26	28	11	33	1.91
42258530--42258605	22	3.3	22	65	28	59	25	31	13	30	1.93
42264586--42264624	19	2.1	19	100	0	78	33	10	35	20	1.86
42271267--42271360	42	2.2	41	81	5	107	46	13	6	32	1.69
42271378--42271417	19	2.2	18	90	4	62	45	12	2	40	1.56
42273344--42273434	42	2.2	42	85	0	119	49	13	7	29	1.69
42273445--42273484	19	2.2	18	86	4	53	42	12	2	42	1.56
42282230--42282274	22	2.0	22	91	0	72	48	15	2	33	1.57
42287441--42287525	44	1.9	45	90	7	138	32	7	7	52	1.55
42306838--42306918	22	3.8	22	81	10	80	48	33	3	14	1.62
42306903--42306976	28	2.6	29	89	2	114	48	31	4	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42318169--42318260	37	2.4	37	82	8	98	51	6	2	40	1.40
42320575--42320662	42	2.1	43	91	2	142	30	13	19	36	1.90
42326680--42326780	43	2.3	43	91	0	157	31	12	19	35	1.90
42338311--42338347	7	5.6	7	93	6	60	16	8	16	59	1.59
42344382--42344412	16	2.0	15	93	6	53	19	6	12	61	1.53
42344603--42344631	7	4.3	7	95	4	51	13	10	13	62	1.55
42350798--42350829	10	3.3	10	95	4	57	62	0	6	31	1.20
42350825--42350887	27	2.3	27	78	5	74	49	9	0	41	1.35
42350831--42350883	27	1.9	27	88	3	79	43	11	0	45	1.40
42357735--42357823	44	2.0	44	91	0	142	28	19	15	37	1.92
42361617--42361712	47	2.0	47	100	0	192	17	29	12	40	1.86
42367465--42367579	55	2.1	56	82	8	137	34	22	24	18	1.96
42367490--42367579	27	3.2	27	81	7	101	32	24	24	18	1.97
42375336--42375425	27	3.2	27	79	7	92	32	23	24	20	1.98
42389120--42389220	50	2.0	50	96	0	184	30	13	27	27	1.94
42390438--42390539	43	2.4	43	80	12	104	28	17	24	29	1.97
42400129--42400168	13	3.1	13	79	13	55	57	0	42	0	0.98
42406179--42406266	31	2.9	30	84	5	90	40	14	9	35	1.78
42406208--42406288	31	2.6	31	92	0	135	45	12	7	34	1.70
42406315--42406417	50	2.1	50	96	0	188	37	11	11	38	1.78
42406800--42406856	17	3.6	16	73	17	57	36	3	1	57	1.26
42406849--42406904	17	3.0	20	76	15	73	42	5	7	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42406842--42406903	20	3.3	19	76	15	74	43	3	6	46	1.45
42413822--42413885	28	2.3	28	88	0	92	34	9	9	46	1.68
42414196--42414306	36	3.1	35	78	7	100	27	7	18	46	1.75
42415017--42415054	14	2.9	13	81	11	51	18	13	10	57	1.63
42415122--42415167	23	2.0	23	100	0	92	34	8	17	39	1.80
42420084--42422352	4	570.2	4	86	2	2838	44	26	3	25	1.70
42428858--42428896	20	2.1	19	86	13	55	51	5	0	43	1.24
42429919--42429952	18	1.9	17	94	5	59	23	5	0	70	1.09
42431549--42431604	21	2.7	21	85	0	67	32	8	28	30	1.88
42431798--42431873	35	2.2	35	83	9	93	53	5	0	40	1.23
42431906--42431944	18	2.2	18	90	4	62	53	0	0	46	1.00
42440703--42440749	18	2.7	18	77	16	53	53	0	8	38	1.32
42442498--42442541	20	2.2	20	100	0	88	34	0	20	45	1.51
42446076--42446124	25	1.9	26	84	12	66	42	2	6	48	1.39
42446045--42446243	68	3.0	66	75	17	232	42	4	4	49	1.42
42446115--42446229	62	1.9	59	89	5	176	42	4	3	49	1.39
42447533--42447719	40	4.7	40	90	0	275	31	28	21	18	1.97
42455550--42455774	40	5.6	40	84	0	297	32	29	21	16	1.95
42460280--42460328	25	1.9	26	84	12	66	26	4	4	65	1.29
42471021--42471196	47	3.8	47	78	10	209	25	30	17	26	1.97
42471019--42471188	92	1.8	93	88	6	265	25	30	17	26	1.97
42473484--42473581	33	3.0	32	77	3	97	33	9	19	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42479741--42479805	26	2.5	26	78	16	73	67	1	7	23	1.25
42484690--42484765	32	2.4	32	95	0	134	28	9	23	38	1.86
42491531--42491571	22	1.9	21	85	5	55	19	26	41	12	1.87
42492709--42492888	47	3.9	47	73	12	165	23	29	17	29	1.97
42495754--42495938	79	2.3	81	84	7	236	24	22	27	25	2.00
42495755--42495938	40	4.6	40	83	9	216	24	22	27	25	2.00
42495807--42495971	79	2.1	79	84	6	210	26	21	27	25	1.99
42503706--42503888	77	2.3	80	82	9	216	24	22	27	25	2.00
42503706--42503888	40	4.7	40	82	9	216	24	22	27	25	2.00
42503758--42503921	79	2.1	77	81	8	190	26	20	26	26	1.99
42547581--42547933	74	4.9	71	80	7	363	27	16	22	32	1.96
42547581--42547895	144	2.2	145	82	5	384	27	16	22	33	1.95
42547943--42548249	89	3.5	88	78	8	257	27	14	19	38	1.91
42548899--42548955	22	2.6	22	89	8	89	29	52	3	14	1.58
42549984--42550047	26	2.4	28	75	17	71	34	4	1	59	1.28
42550741--42550802	27	2.2	28	81	10	74	38	16	1	43	1.57
42561697--42561721	11	2.3	11	100	0	50	60	0	24	16	1.36
42564863--42565037	41	4.0	42	76	15	151	30	25	15	29	1.96
42564863--42564989	42	3.0	41	82	5	148	28	25	15	30	1.96
42565007--42565115	47	2.3	47	80	1	112	30	25	14	29	1.95
42565137--42565254	31	3.8	31	86	2	148	26	27	18	27	1.98
42565230--42565406	50	3.5	50	90	0	273	25	22	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42569881--42569939	19	3.3	19	72	13	70	47	8	6	37	1.61
42569868--42569939	35	2.1	35	100	0	144	48	8	6	36	1.60
42569868--42569921	16	3.2	16	70	14	54	50	7	7	35	1.59
42576900--42576959	21	2.7	22	82	5	68	60	0	0	40	0.97
42581142--42581181	20	2.1	19	85	4	53	32	0	12	55	1.38
42581337--42581374	16	2.4	16	90	0	58	28	7	26	36	1.84
42581394--42581430	19	1.9	19	88	0	56	40	2	16	40	1.62
42584433--42584614	46	4.0	45	86	5	224	39	13	24	21	1.90
42591473--42591570	40	2.5	40	88	3	144	37	22	17	22	1.94
42591473--42591591	40	3.0	40	81	4	141	34	21	18	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290