genome.fa.s7.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  108  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33530617--33530680	26	2.4	27	84	5	78	42	21	18	17	1.89
33538136--33538216	33	2.5	33	89	0	117	25	24	22	27	2.00
33538359--33538422	26	2.4	27	84	5	78	42	21	18	17	1.89
33543638--33543686	24	2.1	22	85	14	64	20	0	18	61	1.35
33544207--33544252	22	2.1	22	88	8	67	39	4	8	47	1.54
33544250--33544306	27	2.1	27	100	0	114	28	7	17	47	1.73
33545344--33545384	13	2.9	14	79	20	50	63	0	17	19	1.31
33547158--33547196	19	2.0	21	85	10	55	38	0	12	48	1.42
33553698--33553741	18	2.4	18	92	0	70	31	43	9	15	1.79
33555586--33555628	20	2.2	20	84	8	54	16	23	39	20	1.92
33556046--33556103	30	1.9	30	82	6	73	24	31	25	18	1.98
33563567--33563607	5	8.8	5	79	15	52	2	19	0	78	0.87
33563590--33563647	26	2.2	26	81	6	64	0	39	0	60	0.97
33567035--33567071	9	4.1	9	85	0	56	29	8	13	48	1.71
33571881--33571924	21	2.1	21	100	0	88	29	4	25	40	1.75
33581684--33581851	90	1.9	90	88	2	257	19	19	23	38	1.94
33581686--33581880	90	2.2	90	83	5	234	21	17	23	37	1.94
33585080--33585144	26	2.5	26	82	5	78	72	0	1	26	0.94
33590339--33590364	13	2.0	13	100	0	52	69	0	15	15	1.20
33592596--33592635	19	2.2	18	90	4	62	60	0	0	40	0.97
33596413--33596459	17	2.6	19	83	13	71	36	36	0	27	1.57
33597976--33598033	29	2.0	29	93	0	98	37	15	17	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33609244--33609387	55	2.6	54	83	4	171	25	29	27	18	1.98
33612449--33612488	20	2.0	21	85	14	57	25	5	15	55	1.60
33615359--33615502	41	3.5	41	81	3	182	30	14	18	36	1.90
33615889--33615938	21	2.4	21	76	6	57	60	2	0	38	1.09
33616773--33616911	74	1.9	73	90	1	224	38	3	12	45	1.59
33616792--33616911	37	3.2	37	70	13	111	41	4	10	43	1.59
33621564--33621649	42	2.0	42	97	0	163	45	12	9	32	1.74
33625886--33625955	34	2.1	34	91	0	113	28	21	24	25	1.99
33632316--33632374	20	3.0	20	69	11	50	44	3	6	45	1.47
33633496--33633526	14	2.1	14	94	5	53	0	22	0	77	0.77
33635426--33635461	18	2.1	17	94	5	63	47	0	16	36	1.47
33639372--33639704	131	2.6	130	86	4	424	35	18	17	27	1.94
33642385--33642505	45	2.7	43	84	5	152	28	22	20	28	1.99
33642475--33642860	88	4.4	89	82	3	377	24	23	19	32	1.98
33642520--33642861	177	1.9	177	80	3	402	23	23	20	33	1.97
33654300--33654627	131	2.5	130	87	3	459	36	19	16	27	1.93
33655123--33655220	19	5.2	19	86	7	137	38	12	14	34	1.83
33655126--33655234	36	2.9	36	86	6	137	37	13	13	34	1.85
33661598--33662839	88	14.1	88	75	11	1032	30	18	24	26	1.98
33661598--33662834	132	9.4	132	95	0	2190	30	18	24	26	1.98
33661598--33662834	263	4.7	264	95	0	2190	30	18	24	26	1.98
33663402--33663480	19	4.2	19	85	9	108	40	10	15	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33670262--33670294	17	1.9	17	93	0	57	39	0	6	54	1.25
33670412--33670437	13	2.0	13	100	0	52	53	0	0	46	1.00
33671745--33671799	26	2.1	26	100	0	110	25	10	16	47	1.79
33672274--33672318	22	2.0	22	91	0	72	35	33	15	15	1.89
33673353--33673500	61	2.5	60	85	6	192	26	16	10	45	1.80
33673951--33673994	21	2.2	20	83	4	52	45	2	0	52	1.13
33674118--33674149	9	3.7	9	95	4	57	18	0	0	81	0.70
33680392--33680416	7	3.6	7	100	0	50	56	0	12	32	1.36
33681270--33681309	4	10.0	4	94	0	71	25	0	22	52	1.47
33685776--33685829	20	2.7	20	82	0	63	35	18	1	44	1.61
33686035--33686098	20	3.2	20	82	6	76	43	10	4	40	1.61
33688147--33688208	29	2.1	30	90	6	99	25	9	16	48	1.76
33690483--33690574	39	2.4	39	81	0	94	32	5	20	41	1.75
33692806--33692851	22	2.1	22	100	0	92	52	4	21	21	1.64
33692810--33692856	22	2.1	22	92	4	76	48	8	23	19	1.75
33694375--33694546	43	4.0	44	73	13	160	25	17	26	31	1.97
33695073--33695118	23	2.0	24	86	4	67	17	2	28	52	1.56
33696987--33697060	37	2.0	37	94	0	130	44	18	8	28	1.78
33697599--33697647	23	2.1	23	100	0	98	44	12	8	34	1.71
33712142--33712464	45	7.2	45	73	8	212	43	15	15	25	1.86
33712237--33712524	90	3.2	89	86	2	389	45	14	15	24	1.83
33712140--33712464	135	2.4	134	73	6	316	43	15	15	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33712242--33712529	45	6.4	45	68	15	157	45	14	14	25	1.83
33712497--33712600	44	2.3	46	80	4	124	39	13	14	32	1.85
33714442--33714472	15	2.1	15	93	0	53	29	0	32	38	1.57
33715408--33715441	17	2.0	18	88	11	54	47	0	11	41	1.40
33717654--33717895	37	6.5	37	84	1	306	21	23	18	36	1.95
33717654--33717930	74	3.7	74	80	3	236	20	23	19	36	1.95
33718075--33718133	22	2.8	22	82	7	70	42	3	16	37	1.66
33726930--33726968	6	6.2	6	82	11	51	48	17	2	30	1.61
33733397--33733443	18	2.6	18	80	6	51	44	6	0	48	1.28
33737332--33737399	35	1.9	35	84	0	91	30	22	16	30	1.95
33745993--33746022	3	10.0	3	100	0	60	0	33	0	66	0.92
33753466--33753504	20	2.0	20	94	0	69	17	20	48	12	1.80
33754171--33754516	133	2.6	133	85	2	399	24	25	18	31	1.98
33754285--33754479	44	4.4	44	68	11	137	22	27	17	32	1.96
33754217--33754547	133	2.5	134	85	3	452	24	25	17	31	1.97
33754545--33754675	46	2.8	46	88	0	199	21	26	18	33	1.96
33766590--33766646	25	2.3	25	82	11	64	63	5	5	26	1.37
33766850--33766890	20	2.0	20	86	9	57	58	4	12	24	1.53
33766917--33766966	26	1.9	26	87	0	73	58	0	8	34	1.28
33767113--33767215	3	33.0	3	73	11	55	62	2	4	30	1.31
33769669--33769988	46	7.0	46	91	0	424	21	24	15	39	1.92
33779950--33779989	20	2.0	20	100	0	80	25	10	10	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33780854--33780890	13	2.7	15	80	20	53	32	0	16	51	1.45
33783054--33783163	26	4.2	26	96	0	184	34	6	23	35	1.80
33784606--33784681	26	2.8	26	86	4	89	32	22	14	30	1.94
33784784--33784950	27	6.2	27	89	2	210	17	25	22	35	1.95
33784782--33784950	81	2.1	81	88	2	250	17	24	22	35	1.95
33785012--33785051	19	2.0	22	85	14	59	17	2	47	32	1.61
33788913--33789021	26	4.2	26	95	1	184	33	4	24	36	1.76
33790631--33790791	27	6.3	27	84	13	189	16	24	23	35	1.95
33790659--33790758	48	2.1	48	90	9	161	16	26	24	34	1.95
33797460--33797516	25	2.3	25	82	11	64	63	5	5	26	1.37
33797635--33797700	31	2.1	31	81	15	75	71	0	3	25	1.01
33797721--33797761	20	2.0	20	86	9	57	58	4	12	24	1.53
33797788--33797837	26	1.9	26	87	0	73	58	0	8	34	1.28
33797980--33798082	3	33.0	3	73	11	55	62	2	4	30	1.31
33800526--33800840	46	7.0	46	88	3	406	21	23	15	39	1.91
33800521--33800840	134	2.4	137	86	2	414	21	23	15	39	1.92
33802991--33803027	20	1.9	20	88	5	58	51	8	0	40	1.32
33805181--33805215	12	3.0	12	87	4	54	37	0	0	62	0.95
33805340--33805402	30	2.1	30	96	0	117	57	12	3	26	1.51
33807888--33807951	30	2.2	30	85	2	85	31	7	4	56	1.49
33809764--33809867	46	2.3	46	88	3	147	26	17	25	29	1.97
33810181--33810218	20	1.9	20	88	0	58	23	2	18	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33811230--33811254	7	3.6	7	100	0	50	88	0	0	12	0.53
33812470--33812507	19	2.0	20	89	5	60	34	13	18	34	1.89
33814100--33814175	40	1.9	40	91	0	125	38	35	14	11	1.83
33820555--33820625	35	2.0	35	97	0	133	28	33	23	14	1.94
33821354--33821413	30	2.0	31	86	3	86	11	6	3	78	1.06
33821373--33821454	24	3.4	23	73	15	60	10	7	6	75	1.18
33828141--33828211	35	2.0	35	94	0	124	29	32	23	14	1.94
33829516--33829860	50	6.9	50	75	3	282	31	24	18	25	1.98
33829577--33829758	101	1.8	101	80	2	222	32	23	17	26	1.97
33829519--33829850	151	2.2	151	92	1	558	31	24	18	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290