genome.fa.s7.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  181  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58339372--58339405	4	8.0	4	90	9	50	23	0	2	73	0.97
58344592--58344625	12	2.8	12	81	0	50	44	0	38	17	1.49
58350913--58351010	28	3.5	28	90	2	135	31	28	13	26	1.94
58355852--58355885	12	2.8	12	81	0	50	44	0	38	17	1.49
58360572--58360600	15	1.9	15	100	0	58	31	34	0	34	1.58
58360990--58361045	13	4.6	12	80	14	62	71	5	5	17	1.24
58360990--58361034	13	3.5	13	87	6	65	73	4	4	17	1.17
58360990--58361045	12	4.6	12	82	4	67	71	5	5	17	1.24
58361957--58361999	15	2.8	15	85	3	59	79	2	18	0	0.85
58361958--58362013	21	2.6	22	81	13	64	76	1	17	3	1.01
58362082--58362106	12	2.1	12	100	0	50	76	0	16	8	1.02
58362076--58362131	18	3.1	18	76	5	51	69	3	19	7	1.27
58362082--58362165	30	2.7	31	80	7	100	65	1	20	13	1.33
58365758--58365854	30	3.2	30	71	8	90	27	15	28	27	1.96
58366878--58366902	13	1.9	13	100	0	50	36	16	32	16	1.90
58367385--58367481	30	3.2	30	73	2	88	28	13	27	29	1.94
58369537--58369621	30	2.8	30	82	10	102	11	22	2	63	1.39
58369624--58369654	12	2.6	12	100	0	62	25	16	12	45	1.83
58369704--58369747	15	2.9	15	82	3	52	6	15	0	77	0.97
58371649--58371695	19	2.4	19	89	3	67	70	2	8	19	1.24
58374905--58374964	30	2.0	31	86	3	86	15	25	18	41	1.89
58379454--58379505	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58382674--58382765	27	3.4	27	80	5	114	28	22	6	42	1.78
58382772--58382895	27	4.6	27	84	2	115	39	21	8	29	1.84
58382772--58382895	54	2.3	54	84	2	151	39	21	8	29	1.84
58382797--58382920	27	4.6	27	84	4	153	41	21	8	29	1.82
58382797--58383003	54	3.8	54	74	11	172	40	19	9	30	1.83
58382858--58382983	27	4.6	27	77	11	103	40	17	10	31	1.83
58383028--58383097	27	2.6	27	80	8	72	37	22	20	20	1.95
58383894--58383971	25	3.2	25	88	1	113	32	21	20	25	1.98
58388998--58389051	23	2.5	22	90	6	83	53	18	0	27	1.45
58389017--58389050	11	3.2	11	83	8	52	47	20	0	32	1.51
58390102--58390126	13	1.9	13	100	0	50	28	0	8	64	1.22
58392279--58392319	19	2.1	20	95	4	75	70	4	24	0	1.06
58393518--58393695	40	4.5	40	91	3	263	24	22	28	25	2.00
58400708--58400884	40	4.4	40	89	3	243	24	21	27	26	1.99
58404288--58404312	13	1.9	13	100	0	50	28	0	8	64	1.22
58406647--58406706	29	2.1	29	90	0	93	41	28	0	30	1.56
58415291--58415438	79	1.9	80	81	7	185	25	28	22	23	2.00
58415254--58415438	40	4.6	41	78	9	195	25	27	22	24	2.00
58418230--58418289	29	2.1	29	90	0	93	41	28	0	30	1.56
58422355--58422401	20	2.3	20	82	10	51	4	25	4	65	1.29
58424783--58424820	20	1.9	19	89	5	58	57	5	0	36	1.21
58426199--58426244	20	2.3	20	84	0	56	17	28	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58426210--58426245	10	3.6	10	84	0	54	19	22	19	38	1.93
58427141--58427218	41	1.9	41	91	0	129	29	26	11	32	1.91
58428729--58428781	21	2.6	21	88	5	74	47	20	18	13	1.82
58429827--58429890	22	3.0	22	90	4	103	4	14	3	78	1.04
58433051--58433079	12	2.3	13	94	5	51	75	0	0	24	0.80
58438605--58438704	52	1.9	53	85	2	139	36	13	20	31	1.90
58439447--58439471	12	2.1	12	100	0	50	72	0	12	16	1.13
58447318--58447360	10	4.2	10	85	5	59	44	23	20	11	1.84
58447318--58447360	21	2.1	21	91	4	70	44	23	20	11	1.84
58447318--58447369	20	2.5	21	87	3	70	40	21	25	13	1.89
58448424--58448467	15	2.8	16	79	10	54	77	11	4	6	1.11
58449114--58449144	14	2.2	14	94	0	53	58	3	29	9	1.46
58456035--58456065	7	4.3	7	92	8	53	0	58	0	41	0.98
58456374--58456421	25	1.9	25	87	8	71	25	6	0	68	1.12
58458411--58458489	37	2.1	37	88	4	115	25	30	18	25	1.98
58458608--58459190	47	12.4	47	96	0	1013	29	29	8	32	1.87
58462555--58462710	78	2.0	80	82	5	192	25	26	21	27	1.99
58462568--58462748	40	4.6	40	77	9	167	24	26	22	26	2.00
58463058--58463130	27	2.6	27	82	8	85	27	31	15	26	1.95
58465035--58465113	37	2.1	37	88	4	115	25	30	18	25	1.98
58465232--58465767	47	11.4	47	96	0	928	29	29	8	32	1.87
58470130--58470304	99	1.8	94	81	8	217	25	29	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58473002--58473086	40	2.1	40	95	0	152	24	24	12	37	1.91
58473016--58473081	22	3.2	22	60	24	52	28	25	13	31	1.94
58474787--58474858	26	2.7	27	86	4	110	37	19	11	31	1.87
58474838--58475074	27	8.8	27	83	3	244	39	20	10	29	1.85
58475317--58475433	40	2.9	40	88	5	173	23	23	27	26	2.00
58475576--58475639	22	2.9	22	79	9	76	21	21	21	34	1.97
58476323--58476543	110	2.0	111	97	2	419	36	17	13	33	1.88
58476653--58476711	31	1.9	31	93	3	102	35	13	22	28	1.92
58481175--58481456	100	2.8	100	87	4	363	26	16	25	31	1.96
58481181--58481465	150	1.9	152	91	2	468	25	16	25	31	1.96
58481231--58481465	50	4.7	50	88	2	346	26	17	25	30	1.97
58482298--58482326	14	2.1	14	100	0	58	58	0	13	27	1.36
58491456--58491499	20	2.3	20	88	7	65	22	31	36	9	1.86
58500077--58500151	24	3.2	24	69	19	61	24	25	16	34	1.95
58502123--58502156	9	3.7	9	92	4	50	73	8	5	11	1.24
58508233--58508328	30	3.2	30	71	8	88	27	15	29	28	1.96
58509922--58509969	25	1.9	25	86	0	69	37	25	12	25	1.91
58510009--58510047	10	3.8	10	90	6	60	33	17	15	33	1.92
58510008--58510047	21	1.9	21	94	0	71	35	17	15	32	1.91
58510093--58510162	25	2.8	25	95	0	122	25	25	22	25	2.00
58510092--58510175	25	3.4	24	88	6	116	28	23	22	25	1.99
58510093--58510187	50	1.9	50	82	8	122	27	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58518798--58518828	16	2.0	15	93	6	53	32	19	0	48	1.49
58538689--58538749	15	4.1	15	76	17	65	9	13	14	62	1.55
58542564--58542839	51	5.5	50	70	13	183	28	22	20	28	1.98
58542556--58542844	101	2.9	99	88	3	391	28	22	21	28	1.99
58542564--58542849	50	5.7	50	70	14	196	28	22	20	28	1.98
58542562--58542892	101	3.3	101	81	3	294	30	23	19	27	1.98
58548308--58548374	34	2.0	33	82	8	82	22	23	20	32	1.98
58550043--58550218	46	3.8	46	75	14	173	22	21	26	30	1.98
58550039--58550210	93	1.8	93	90	2	274	22	21	27	28	1.99
58553087--58553183	30	3.2	30	73	2	88	29	27	13	28	1.94
58556262--58556436	27	6.4	27	84	3	199	26	14	28	30	1.95
58556262--58556415	82	1.9	81	87	4	229	27	14	27	29	1.96
58556256--58556436	82	2.2	81	82	2	220	27	14	27	29	1.96
58564494--58564718	49	4.5	49	83	3	288	25	17	26	30	1.97
58564490--58564718	101	2.3	98	86	2	305	25	17	26	29	1.98
58567472--58567505	15	2.2	16	94	5	61	11	11	17	58	1.62
58569547--58569607	30	2.0	30	84	6	79	36	9	24	29	1.88
58570261--58570485	49	4.5	50	82	2	283	26	18	26	28	1.98
58579420--58579483	24	2.6	25	87	4	87	32	31	15	20	1.94
58579518--58579957	94	4.7	94	96	0	790	40	17	10	31	1.84
58584217--58584330	39	2.9	39	92	0	183	27	27	21	24	1.99
58584167--58584330	78	2.1	77	80	9	174	26	26	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58590502--58590555	20	2.7	20	82	0	63	24	20	18	37	1.94
58590502--58590575	30	2.5	30	86	8	98	21	20	18	39	1.93
58590502--58590566	20	3.2	20	71	16	53	23	21	16	38	1.93
58591952--58591977	12	2.2	12	100	0	52	76	7	0	15	0.99
58593062--58593187	6	20.7	6	69	10	69	72	2	17	7	1.20
58593048--58593185	12	11.0	12	68	21	79	71	2	17	9	1.23
58593126--58593185	13	4.6	14	74	17	51	75	0	15	10	1.05
58593124--58593205	14	6.3	14	69	21	54	71	1	17	9	1.18
58593202--58593264	33	1.9	33	84	12	85	53	6	26	12	1.62
58595034--58595087	20	2.7	20	82	0	63	24	20	18	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290