Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  13  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4592710--4592765
3
18.7
3
100
0
112
66
0
0
33
0.92
4593538--4593570
11
3.1
11
86
4
50
81
3
6
9
0.95
4605184--4605347
41
4.2
36
74
10
105
60
3
2
32
1.27
4605260--4605326
10
6.6
10
75
17
59
67
2
2
26
1.20
4605260--4605347
19
4.4
19
76
12
79
65
2
3
28
1.20
4605261--4605347
41
2.2
40
85
10
115
66
2
3
27
1.20
4621300--4621603
152
2.0
152
96
0
563
49
22
7
20
1.73
4627966--4628034
36
1.9
35
82
2
84
39
5
1
53
1.34
4634125--4634259
39
3.4
39
74
11
116
28
27
20
23
1.99
4635823--4635873
5
10.0
5
95
4
93
60
0
0
39
0.97
4636670--4636721
24
2.2
24
86
6
70
34
21
25
19
1.96
4638380--4638404
13
1.9
13
100
0
50
24
24
12
40
1.88
4641624--4641699
39
2.0
39
94
2
136
34
5
6
53
1.49
4644204--4644241
3
12.7
3
100
0
76
0
31
0
68
0.90
4647119--4647164
23
2.0
23
83
8
58
47
0
2
50
1.13
4647884--4647921
19
1.9
19
89
5
58
65
5
0
28
1.14
4647884--4647928
19
2.3
20
84
3
56
66
4
2
26
1.22
4654092--4654158
34
1.9
35
93
3
118
32
8
11
46
1.72
4656953--4657013
25
2.4
26
74
20
65
60
1
32
4
1.28
4657075--4657108
18
1.9
17
94
5
59
41
0
58
0
0.98
4657694--4657744
21
2.4
21
86
0
66
35
35
5
23
1.79
4663202--4663290
44
2.0
44
97
0
169
22
12
6
58
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4666078--4666115
16
2.2
18
86
9
53
31
0
5
63
1.17
4666439--4666467
7
4.1
7
100
0
58
0
13
0
86
0.58
4673445--4673561
51
2.3
51
95
0
207
26
23
17
33
1.96
4676307--4676358
24
2.2
24
89
0
77
55
9
1
32
1.43
4677438--4677491
4
13.5
4
100
0
108
25
0
24
50
1.50
4690004--4690050
20
2.3
20
100
0
94
48
8
8
34
1.64
4707859--4707883
12
2.1
12
100
0
50
40
0
8
52
1.31
4708209--4708242
13
2.5
14
85
4
52
73
0
0
26
0.83
4709121--4709172
16
3.2
16
83
0
77
32
0
28
38
1.57
4709407--4709441
18
2.0
17
88
5
52
54
0
0
45
0.99
4713429--4713481
27
2.0
27
96
0
97
35
11
13
39
1.80
4713470--4713502
15
2.1
16
88
5
50
54
15
6
24
1.63
4713817--4713855
12
3.2
12
88
0
51
0
35
0
64
0.94
4713828--4713869
12
3.5
12
83
9
50
0
30
0
69
0.89
4719336--4719362
14
1.9
14
100
0
54
51
0
11
37
1.37
4728552--4728594
22
2.0
22
85
0
59
11
9
16
62
1.53
4728696--4728747
16
3.2
16
100
0
104
25
0
36
38
1.56
4728975--4729114
17
8.6
17
65
23
61
52
0
1
45
1.14
4729012--4729060
24
2.1
22
85
14
64
55
0
2
42
1.11
4729031--4729086
15
4.0
15
73
17
57
55
0
0
44
0.99
4729041--4729103
26
2.5
25
82
10
83
58
1
0
39
1.07
4728962--4729224
108
2.6
102
82
9
279
51
3
1
43
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4737464--4737606
71
2.0
71
93
0
241
29
9
24
36
1.88
4738400--4738444
19
2.5
17
79
13
54
73
6
2
17
1.15
4740945--4740996
26
1.9
28
88
7
81
19
5
3
71
1.22
4740929--4740996
31
2.1
33
86
5
95
20
7
4
67
1.33
4740947--4740996
5
9.4
5
83
12
64
20
4
4
72
1.18
4742334--4742398
16
4.1
15
75
15
60
23
1
3
72
1.07
4744732--4744782
21
2.4
21
81
12
61
31
1
3
62
1.24
4754067--4754135
36
1.9
36
82
5
86
62
8
7
21
1.48
4766022--4766056
15
2.4
14
86
9
52
22
0
31
45
1.53
4766025--4766066
22
2.0
21
90
4
66
21
0
33
45
1.52
4766025--4766087
21
3.0
21
85
2
72
19
0
38
42
1.51
4766038--4766097
21
2.8
22
85
7
79
15
0
43
41
1.46
4766038--4766150
7
15.9
7
73
3
55
20
0
36
42
1.58
4770363--4770415
22
2.4
23
81
12
67
28
3
22
45
1.70
4771395--4771532
43
3.2
43
82
4
161
25
17
28
28
1.97
4773052--4773080
13
2.1
14
93
6
51
55
10
0
34
1.34
4778080--4778223
9
16.0
9
70
12
82
36
0
15
47
1.51
4778117--4778223
18
5.8
18
72
12
92
36
0
15
46
1.53
4778559--4778583
5
5.0
5
100
0
50
80
0
0
20
0.72
4782197--4782243
14
3.4
14
84
0
58
42
38
4
14
1.66
4782253--4782323
34
2.1
34
86
5
99
52
25
0
22
1.48
4782240--4782319
41
2.0
41
82
9
101
52
25
0
22
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4786292--4786389
40
2.4
40
83
12
121
21
18
19
40
1.91
4791897--4791937
21
2.0
21
90
0
64
19
29
21
29
1.98
4794793--4794844
25
2.1
25
92
0
86
34
11
42
11
1.77
4797785--4797810
11
2.4
11
100
0
52
46
34
0
19
1.50
4798900--4798939
13
2.8
13
88
11
53
42
2
7
47
1.45
4802936--4802972
14
2.7
14
84
16
51
21
27
10
40
1.86
4813105--4813173
27
2.4
27
77
15
68
18
7
34
39
1.79
4813154--4813199
23
2.0
23
91
4
74
8
8
36
45
1.66
4813228--4813347
48
2.5
48
98
0
231
42
0
18
38
1.56
4821221--4821305
43
2.0
44
90
2
136
36
22
17
23
1.95
4822846--4822877
16
1.9
17
93
6
57
56
3
6
34
1.40
4825766--4825989
104
2.2
104
93
1
378
31
31
19
17
1.95
4827470--4827514
16
2.8
16
81
18
58
55
0
0
44
0.99
4831796--4831830
3
11.7
3
100
0
70
65
0
34
0
0.93
4834602--4834643
20
2.1
20
90
0
66
33
0
0
66
0.92
4836730--4836759
15
1.9
16
93
6
53
53
26
3
16
1.59
4836856--4836923
13
4.8
13
75
19
64
38
51
0
10
1.36
4836860--4836943
32
2.6
32
94
1
141
38
51
0
10
1.37
4836908--4836948
20
2.0
20
100
0
82
39
51
0
9
1.35
4837318--4837358
19
2.2
18
86
4
55
26
2
2
68
1.15
4837513--4837550
17
2.2
17
86
9
51
31
5
2
60
1.33
4838374--4838444
23
3.0
23
72
8
63
57
2
8
30
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4838872--4838933
22
2.8
23
92
4
94
11
0
54
33
1.36
4839004--4839048
15
2.9
15
86
3
54
6
4
37
51
1.49
4842040--4842097
28
2.1
28
100
0
116
36
17
6
39
1.76
4842552--4842593
22
1.9
22
85
9
59
42
11
30
14
1.81
4846522--4846560
17
2.2
17
86
4
51
25
0
2
71
0.98
4851838--4851886
13
3.3
16
67
21
52
44
0
14
40
1.45
4851834--4851891
28
2.0
29
96
3
109
43
0
13
43
1.44
4855029--4855075
20
2.4
19
82
10
58
17
4
8
70
1.29
4856902--4856964
17
3.5
17
83
12
81
30
6
11
52
1.61
4857348--4857740
92
4.2
92
93
1
642
38
11
10
39
1.76
4859800--4859837
9
4.2
9
93
0
67
34
18
34
13
1.89
4860906--4860931
9
2.9
9
100
0
52
57
11
0
30
1.34
4860876--4861017
68
2.1
66
90
2
221
45
10
5
38
1.62
4861006--4861047
16
2.6
16
92
0
66
42
7
2
47
1.43
4862088--4862127
21
1.9
21
85
10
55
52
0
0
47
1.00
4865744--4865790
22
2.2
22
88
11
71
44
4
19
31
1.70
4871113--4871140
7
4.0
7
100
0
56
14
0
14
71
1.15
4874141--4874193
13
4.1
13
78
7
54
43
7
1
47
1.42
4875399--4875466
22
3.0
22
79
10
75
41
17
23
17
1.90
4876590--4876632
19
2.3
19
84
8
52
4
16
6
72
1.24
4876634--4876728
7
13.0
7
72
25
65
54
1
1
43
1.14
4876643--4876685
5
9.0
5
87
10
63
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4876643--4876685
13
3.0
15
83
13
63
58
0
0
41
0.98
4876641--4876729
15
6.4
14
73
24
82
53
1
1
43
1.15
4879174--4879224
22
2.3
23
82
6
68
52
17
3
25
1.61
4883043--4883103
28
2.1
30
84
6
81
63
0
1
34
1.04
4883096--4883153
17
3.4
17
95
2
98
50
0
3
46
1.18
4883130--4883197
35
1.9
35
85
8
93
61
2
0
35
1.11
4883409--4883497
19
4.9
17
73
18
65
32
2
3
61
1.24
4883384--4883480
9
10.4
9
73
16
74
32
3
2
61
1.23
4883447--4883546
37
2.7
36
75
6
101
32
3
2
63
1.21
4883548--4883769
88
2.5
88
87
4
326
31
7
22
38
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290