genome.fa.s7.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  144  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45833589--45833689	21	4.7	21	65	8	60	48	27	0	23	1.51
45833783--45833881	7	13.9	7	77	11	94	45	36	0	18	1.49
45833909--45833942	15	2.3	15	90	5	52	47	32	0	20	1.51
45834235--45834330	40	2.4	40	83	13	110	34	16	21	27	1.95
45834430--45834509	40	2.0	40	87	4	117	31	15	22	31	1.94
45834443--45834553	40	2.8	40	83	6	129	30	18	19	30	1.96
45834638--45834723	41	2.1	41	84	4	111	25	17	16	40	1.90
45837046--45837300	55	4.8	53	76	8	225	36	17	24	21	1.95
45837053--45837253	108	1.8	110	86	4	291	34	17	24	23	1.96
45837369--45837416	23	2.0	24	88	4	71	47	10	20	20	1.79
45837492--45837522	16	1.9	16	93	0	53	41	0	22	35	1.54
45842650--45842826	27	6.6	27	83	5	196	29	28	15	27	1.96
45842671--45842825	81	1.9	81	88	5	233	29	28	15	27	1.96
45849212--45849236	12	2.1	12	100	0	50	40	0	8	52	1.31
45850015--45850057	13	3.2	13	78	15	52	25	6	48	18	1.73
45851245--45851292	25	1.9	25	86	0	69	31	22	16	29	1.96
45851423--45851514	25	3.7	25	89	0	139	31	27	18	22	1.97
45851423--45851517	50	1.9	50	91	0	154	30	26	18	24	1.98
45851739--45851879	31	4.5	31	93	0	228	34	19	25	21	1.96
45854855--45854966	40	2.8	40	75	6	100	34	24	16	25	1.95
45858267--45858487	40	5.6	40	90	0	327	24	22	25	26	2.00
45862120--45862452	172	1.9	172	93	0	576	24	25	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45875564--45875593	14	2.1	15	93	6	53	20	10	13	56	1.65
45879139--45879163	13	1.9	13	100	0	50	16	16	40	28	1.89
45883833--45883862	14	2.1	15	93	6	53	20	10	13	56	1.65
45885617--45885787	93	1.8	93	93	2	299	28	27	21	22	1.99
45885612--45885784	46	3.7	46	78	14	203	29	26	21	22	1.99
45892719--45892804	46	1.9	45	83	4	111	31	27	18	22	1.97
45895364--45895406	8	5.4	8	85	0	50	53	16	20	9	1.70
45895509--45895550	19	2.3	19	87	4	59	23	19	38	19	1.93
45895617--45895740	29	4.4	28	79	2	122	30	15	25	28	1.96
45903712--45903973	40	6.6	40	84	5	273	25	21	27	25	1.99
45903765--45903973	79	2.6	79	84	5	269	25	21	27	25	1.99
45903826--45904008	79	2.3	79	83	4	219	27	20	26	25	1.99
45911335--45911597	40	6.6	40	85	4	282	25	21	27	25	1.99
45911336--45911632	80	3.7	80	81	6	230	26	21	27	24	1.99
45925233--45925305	34	2.2	33	87	2	101	28	21	21	27	1.99
45932362--45932397	11	3.2	12	92	7	58	80	0	19	0	0.71
45932367--45932399	12	2.8	12	86	13	50	81	0	18	0	0.68
45932988--45933184	38	5.4	38	86	8	300	28	14	26	29	1.95
45933107--45933166	31	1.9	31	96	0	111	31	18	25	25	1.97
45933780--45934000	40	5.6	41	75	13	187	25	23	27	23	2.00
45933780--45933964	80	2.3	81	83	6	225	24	23	28	23	2.00
45936775--45936945	46	3.7	45	79	12	204	28	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45936780--45936949	92	1.8	93	94	1	306	28	28	21	21	1.99
45942317--45942487	93	1.8	93	96	0	315	28	28	21	21	1.99
45942312--45942484	46	3.7	46	78	13	210	28	27	21	21	1.99
45944829--45944893	34	1.9	33	81	3	76	24	24	24	26	2.00
45951413--45951827	224	1.9	223	87	2	618	30	27	18	23	1.98
45951386--45951827	45	9.9	45	88	2	615	29	28	19	23	1.98
45956957--45957309	45	7.9	44	87	4	460	28	28	19	23	1.98
45960234--45960267	17	1.9	17	88	5	50	35	17	8	38	1.81
45976401--45976676	39	7.1	39	93	1	464	21	26	29	22	1.99
45979441--45979571	65	2.0	65	96	0	244	42	17	14	25	1.87
45979574--45979630	26	2.2	26	83	3	69	26	19	19	35	1.95
45982190--45982261	34	2.1	35	84	7	94	20	26	11	41	1.86
45987229--45987359	65	2.0	65	93	0	226	41	16	15	25	1.88
45991256--45991838	47	12.4	47	96	0	1013	32	8	29	29	1.87
45991956--45992032	37	2.1	37	83	9	97	25	18	29	25	1.98
45994697--45994744	24	2.0	24	87	0	69	33	10	12	43	1.77
45996556--45996704	43	3.5	43	78	12	171	30	15	22	30	1.95
46020804--46021137	50	6.8	50	78	8	321	29	17	28	24	1.97
46020812--46021135	95	3.3	98	80	8	315	28	17	28	25	1.97
46020818--46021093	145	1.9	145	90	0	444	28	17	28	25	1.98
46023194--46023243	22	2.3	21	83	16	59	32	0	12	56	1.36
46026083--46026327	55	4.6	53	78	9	243	36	17	24	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46026090--46026290	108	1.8	110	89	4	318	34	17	25	22	1.95
46027852--46027957	41	2.6	41	92	0	176	27	30	19	22	1.98
46028215--46028537	27	12.0	27	78	9	192	32	10	17	39	1.84
46028226--46028460	55	4.3	54	82	3	197	30	9	18	41	1.82
46028453--46028537	26	3.2	26	90	5	127	35	9	17	37	1.82
46028526--46028602	27	2.9	27	84	0	91	29	18	15	36	1.92
46041583--46041616	17	2.1	16	88	5	50	20	14	17	47	1.83
46042851--46042972	46	2.6	46	82	7	140	30	19	27	22	1.98
46050553--46050729	50	3.7	49	77	13	181	25	17	32	24	1.97
46076495--46076725	49	4.7	49	79	5	268	30	25	17	26	1.97
46076495--46076725	101	2.3	98	81	6	270	30	25	17	26	1.97
46080654--46080701	20	2.4	20	96	0	87	10	31	33	25	1.89
46083289--46083473	79	2.3	82	84	7	238	25	27	22	24	2.00
46083270--46083473	40	5.1	40	82	8	238	25	27	22	25	2.00
46089029--46089095	33	2.0	34	97	2	127	23	32	20	22	1.98
46091231--46091410	39	4.6	40	79	12	187	25	28	20	25	1.99
46091231--46091412	77	2.3	80	83	6	221	25	28	20	25	1.99
46094198--46094322	39	3.2	39	88	1	180	24	20	28	27	1.99
46094198--46094340	77	1.8	78	82	4	173	23	22	27	25	1.99
46102031--46102156	39	3.2	39	96	0	225	22	21	29	26	1.99
46102031--46102183	39	3.9	39	91	1	137	22	22	29	26	1.99
46102031--46102194	78	2.1	78	84	5	208	22	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46102031--46102221	78	2.5	78	82	5	201	21	21	28	27	1.99
46102049--46102226	39	4.6	39	81	5	159	21	21	28	28	1.99
46107871--46107988	40	3.0	40	88	0	173	27	30	21	21	1.98
46111362--46111477	39	3.0	39	94	0	205	21	22	29	26	1.99
46111362--46111505	78	1.8	78	84	0	198	21	21	29	27	1.99
46113539--46113625	43	2.0	43	86	0	120	27	28	18	25	1.98
46120757--46120814	30	1.9	31	85	3	82	39	6	24	29	1.81
46121484--46121605	47	2.6	47	92	0	190	36	13	23	27	1.92
46121585--46121780	54	3.6	53	81	7	216	36	17	24	21	1.95
46129070--46129245	50	3.5	49	80	7	185	25	17	27	29	1.97
46129461--46129497	16	2.1	19	85	14	53	45	5	21	27	1.73
46131489--46131548	30	2.0	30	100	0	120	46	20	3	30	1.66
46133637--46133724	42	2.1	42	91	0	140	25	32	19	22	1.97
46137345--46137377	15	2.2	15	89	10	50	0	36	0	63	0.95
46149384--46149565	78	2.3	81	82	6	212	24	28	22	25	2.00
46149365--46149567	40	5.1	40	80	7	218	24	27	22	25	2.00
46161082--46161198	42	2.7	43	75	6	121	34	25	16	23	1.95
46162292--46162334	18	2.4	18	84	0	59	53	16	16	13	1.73
46162453--46162560	27	4.0	26	82	5	99	37	20	22	20	1.95
46162718--46162769	22	2.4	22	80	0	59	34	21	23	21	1.97
46172027--46172198	93	1.8	93	87	2	256	29	29	19	21	1.98
46172019--46172194	46	3.8	47	78	12	175	30	28	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46177753--46177783	16	1.9	16	93	0	53	35	16	6	41	1.74
46177981--46178088	56	1.9	56	96	0	198	31	22	16	29	1.96
46186398--46186527	47	2.8	47	87	0	170	24	14	27	33	1.94
46200067--46200136	27	2.6	27	95	2	113	31	28	12	27	1.93
46200067--46200164	28	3.5	28	90	2	135	31	28	13	26	1.94
46207550--46207628	30	2.6	30	97	0	149	45	11	10	32	1.74
46208944--46208976	13	2.3	15	90	10	52	69	6	0	24	1.10
46210848--46210880	13	2.6	13	90	4	50	39	0	12	48	1.40
46216253--46216333	6	13.7	6	75	12	78	16	3	1	79	0.95
46216250--46216314	5	12.4	5	79	20	71	18	3	0	78	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290