genome.fa.s7.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  141  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44719852--44719911	6	10.3	6	87	3	70	13	5	1	80	0.96
44719840--44719883	18	2.4	18	88	0	61	15	2	4	77	1.04
44719853--44719923	23	3.1	23	77	6	72	12	5	2	78	1.03
44719857--44719922	34	1.9	34	84	6	89	12	6	3	78	1.04
44721146--44721205	21	3.0	20	81	13	63	3	1	21	73	1.07
44721164--44721205	18	2.3	18	91	0	66	4	0	19	76	0.96
44721172--44721211	18	2.2	18	86	4	53	7	0	20	72	1.08
44721251--44721309	19	2.9	21	85	12	79	3	0	25	71	1.02
44721252--44721315	24	2.6	25	78	14	71	3	0	23	73	0.97
44721256--44721310	20	2.8	19	78	8	65	3	0	25	70	1.03
44721451--44721497	3	17.0	3	79	20	50	0	0	29	70	0.88
44721411--44721496	20	4.2	20	71	20	70	4	0	29	66	1.12
44721451--44721497	14	3.4	14	80	13	62	0	0	29	70	0.88
44721566--44722090	46	11.4	47	91	3	793	29	29	8	32	1.87
44721566--44722090	93	5.7	93	91	3	805	29	29	8	32	1.87
44729132--44729197	27	2.4	27	77	5	71	40	22	19	16	1.91
44734477--44734916	50	8.8	50	76	6	356	26	17	25	31	1.97
44738273--44738342	35	2.1	33	92	7	115	28	17	28	25	1.97
44739830--44740045	40	5.5	40	83	8	248	24	28	22	24	1.99
44744528--44744711	39	4.6	39	81	5	201	25	22	27	25	2.00
44744529--44744734	79	2.6	79	81	7	197	26	22	26	24	2.00
44749611--44749826	40	5.5	40	86	6	273	23	27	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44749611--44749826	119	1.8	118	83	6	285	23	27	24	25	2.00
44752886--44752963	29	2.8	28	84	3	102	25	16	30	26	1.97
44756567--44756596	16	1.9	15	93	6	51	46	23	20	10	1.80
44756831--44756908	28	2.7	29	82	5	97	20	15	34	29	1.93
44758884--44758950	28	2.3	29	84	2	91	29	29	13	26	1.94
44770536--44770567	14	2.4	14	90	10	50	21	9	28	40	1.84
44770579--44770916	50	6.7	50	75	2	300	25	18	26	29	1.98
44770584--44770866	101	2.8	101	85	2	372	26	18	25	29	1.98
44770580--44770925	151	2.3	151	78	3	338	26	18	26	29	1.98
44771484--44771848	180	2.0	180	87	1	536	36	8	21	34	1.83
44777177--44777216	21	1.9	21	89	0	62	27	25	30	17	1.97
44779879--44780069	43	4.5	42	73	11	129	35	23	15	26	1.94
44779867--44780076	86	2.5	86	76	8	212	35	22	15	26	1.94
44798900--44799037	43	3.2	42	80	7	143	26	18	24	31	1.97
44806254--44806475	118	1.9	119	83	6	290	25	27	22	24	2.00
44806252--44806475	40	5.7	40	83	7	269	25	27	22	24	2.00
44816757--44817064	46	6.7	46	89	1	420	37	15	25	22	1.93
44821836--44821919	28	3.2	28	65	25	83	23	16	29	29	1.96
44821798--44822012	49	4.3	49	84	1	268	26	17	27	28	1.98
44829276--44829451	46	3.8	46	78	14	200	21	20	28	29	1.98
44829273--44829444	93	1.8	93	93	2	301	21	20	29	28	1.98
44833295--44833384	27	3.2	27	85	7	119	32	23	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44833490--44833556	28	2.4	28	89	0	107	31	7	26	34	1.84
44834635--44834673	5	7.8	5	83	11	53	82	0	17	0	0.68
44834635--44834673	20	2.0	20	94	0	69	82	0	17	0	0.68
44837874--44838095	40	5.6	40	83	4	227	24	20	28	26	1.99
44837949--44838130	78	2.3	80	80	3	208	25	20	28	25	1.99
44845740--44845950	40	5.4	40	81	8	193	26	19	27	27	1.99
44862435--44862529	44	2.2	44	85	11	124	32	23	12	31	1.92
44866293--44866352	31	2.0	30	83	9	77	36	0	18	45	1.50
44866387--44866461	33	2.3	33	84	6	91	40	18	22	18	1.92
44874429--44874504	31	2.5	31	88	0	116	21	34	28	15	1.94
44881343--44881429	42	2.1	42	93	0	147	21	29	22	25	1.99
44889298--44889338	13	3.0	14	75	17	50	70	0	7	21	1.11
44897636--44897768	46	2.9	46	89	3	187	22	20	24	33	1.97
44920266--44920393	55	2.3	55	80	7	143	24	30	28	16	1.96
44938110--44938198	33	2.7	33	91	0	142	25	21	20	32	1.97
44951948--44952227	50	5.6	50	73	10	221	24	17	26	31	1.97
44952435--44952464	16	1.9	15	93	6	51	43	0	23	33	1.54
44954597--44954692	27	3.6	27	68	10	70	41	14	19	23	1.89
44954696--44954745	22	2.3	22	78	0	55	38	24	20	18	1.93
44954995--44955028	14	2.4	14	85	0	50	41	29	8	20	1.82
44955099--44955175	27	2.9	27	92	0	118	35	9	15	40	1.79
44958878--44958917	21	1.9	21	85	10	55	52	5	0	42	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44959563--44959631	23	3.0	23	95	0	120	43	24	4	27	1.73
44960656--44960722	32	2.1	32	100	0	134	44	14	20	19	1.86
44966842--44966946	43	2.5	42	82	4	140	29	16	24	29	1.96
44973826--44974039	46	4.6	45	76	9	166	21	29	20	28	1.98
44974383--44974440	30	1.9	30	89	0	89	27	24	13	34	1.93
44975799--44975824	10	2.6	10	100	0	52	76	7	0	15	0.99
44980552--44980585	17	1.9	18	88	5	52	73	0	20	5	1.04
44981852--44982075	99	2.3	100	84	4	285	26	17	25	30	1.97
44981852--44982075	49	4.5	50	82	3	258	26	17	25	30	1.97
44990419--44990557	69	2.0	69	100	0	278	30	25	10	34	1.89
45054779--45054820	22	1.9	22	85	0	57	2	28	0	69	1.01
45055420--45055556	62	2.2	62	81	0	157	26	25	24	23	2.00
45059615--45059876	40	6.6	40	86	3	325	22	25	24	27	2.00
45059615--45059876	120	2.2	120	85	3	359	22	25	24	27	2.00
45067314--45067548	40	5.9	40	89	1	346	24	27	22	25	2.00
45067314--45067548	119	2.0	120	88	2	348	24	27	22	25	2.00
45074594--45074786	37	5.2	37	96	0	350	25	31	17	24	1.97
45074922--45075106	48	3.8	48	92	2	291	30	26	7	35	1.83
45075076--45075381	47	6.5	47	93	0	504	25	29	12	32	1.93
45075238--45075315	23	3.2	25	64	29	69	29	32	10	28	1.90
45075263--45075381	23	5.1	22	62	28	59	24	30	13	31	1.93
45080561--45080738	27	6.6	27	74	6	119	28	16	26	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45080558--45080738	82	2.2	81	81	4	204	28	16	25	29	1.97
45088565--45088742	27	6.6	27	74	6	119	28	16	26	29	1.97
45088562--45088742	82	2.2	81	81	4	204	28	16	25	29	1.97
45094807--45094846	21	2.0	20	90	5	62	20	7	27	45	1.78
45096782--45097097	48	6.6	48	78	6	309	23	29	20	26	1.99
45096782--45097114	144	2.3	144	80	5	386	24	28	20	27	1.99
45101502--45101687	41	4.6	41	90	0	259	23	26	24	26	2.00
45101466--45101687	81	2.8	81	83	6	258	23	26	23	26	2.00
45104140--45104231	47	2.0	46	89	6	141	16	18	36	28	1.92
45104421--45104455	18	2.0	18	94	5	63	17	25	45	11	1.81
45114002--45114179	62	2.9	63	83	4	209	30	24	24	21	1.99
45114000--45114201	62	3.3	62	80	4	167	28	24	24	22	1.99
45116523--45116549	12	2.2	12	100	0	54	85	0	0	14	0.61
45119777--45119840	16	4.1	15	87	4	74	46	17	23	12	1.81
45119779--45119845	32	2.1	32	86	5	91	50	16	20	11	1.76
45120057--45120159	28	3.7	28	84	3	118	24	14	35	25	1.93
45122381--45122417	15	2.5	15	95	0	65	13	2	45	37	1.58
45124514--45124563	16	3.1	16	82	0	64	44	22	24	10	1.83
45124780--45124910	28	4.7	28	88	0	172	24	16	34	25	1.95
45127133--45127193	26	2.4	24	79	15	68	77	0	8	14	0.99
45127148--45127210	6	10.3	6	78	10	65	77	0	6	15	0.96
45127133--45127210	32	2.4	31	82	4	84	75	0	8	15	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45127161--45127193	9	3.3	10	87	12	50	81	0	3	15	0.80
45127156--45127212	26	2.1	27	93	3	98	77	0	5	17	0.95
45127299--45127338	21	1.9	21	84	0	53	32	27	12	27	1.93
45138847--45139136	120	2.4	121	87	4	442	44	2	4	48	1.37
45139080--45139116	19	2.0	19	85	15	51	45	0	0	54	1.00
45139281--45139371	45	2.0	45	85	6	123	37	27	6	28	1.82
45139352--45139418	16	4.1	16	96	3	125	37	37	0	25	1.56
45139352--45139418	33	2.1	32	97	2	125	37	37	0	25	1.56
45140035--45140082	25	2.0	24	84	12	62	64	2	8	25	1.32
45145456--45145557	53	1.9	53	83	2	132	28	15	25	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290