genome.fa.s7.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  171  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55805977--55806010	10	3.3	10	84	8	50	29	8	8	52	1.62
55812500--55812564	28	2.3	28	91	0	103	32	27	7	32	1.85
55812670--55812759	27	3.2	28	87	7	130	20	24	23	32	1.98
55812670--55812784	55	2.1	56	83	8	146	19	24	21	34	1.96
55813223--55813261	19	2.1	19	85	0	51	15	5	7	71	1.26
55820051--55820171	39	3.1	39	97	0	224	23	31	24	20	1.98
55823199--55823345	40	3.7	40	83	5	120	25	27	21	25	2.00
55823242--55823464	40	5.6	40	83	7	224	28	27	20	23	1.99
55823205--55823464	79	3.3	80	80	6	219	27	27	20	24	1.99
55823245--55823464	119	1.8	120	83	10	290	27	27	20	23	1.99
55831082--55831228	40	3.7	40	83	5	120	25	27	21	25	2.00
55831088--55831306	79	2.8	80	79	8	193	26	27	21	24	1.99
55831128--55831306	40	4.5	39	81	10	186	27	27	21	23	1.99
55831128--55831306	78	2.3	80	83	11	210	27	27	21	23	1.99
55837178--55837337	39	4.1	39	94	0	266	23	30	23	21	1.99
55842549--55842588	19	2.1	19	100	0	80	30	32	5	32	1.79
55847522--55847562	19	2.2	19	95	0	73	19	7	4	68	1.32
55854645--55854814	46	3.7	46	84	4	202	24	26	17	31	1.97
55856044--55856084	22	1.9	21	85	5	55	48	24	2	24	1.63
55856209--55856257	21	2.3	22	75	13	57	38	12	2	46	1.53
55858573--55858658	24	3.6	24	80	0	91	43	18	17	20	1.89
55865827--55865907	42	1.9	42	82	5	101	23	34	24	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55867845--55867917	38	1.9	38	91	0	119	30	27	15	27	1.96
55867890--55868019	48	2.7	47	83	4	172	29	23	16	31	1.96
55873008--55873183	46	3.8	46	76	12	171	29	29	19	21	1.98
55873584--55873641	30	1.9	30	82	6	73	29	29	5	36	1.79
55887860--55887947	6	14.3	6	73	17	74	47	14	18	19	1.82
55887869--55887947	31	2.5	31	91	0	122	48	13	18	18	1.81
55888084--55888185	27	3.8	26	83	5	114	36	21	23	18	1.95
55888344--55888408	22	3.0	21	80	8	67	32	23	24	20	1.98
55888836--55889049	27	8.0	27	84	2	236	24	20	19	35	1.96
55888835--55889056	54	4.1	54	84	0	266	25	19	19	35	1.96
55889040--55889300	27	9.7	26	79	8	89	31	8	21	39	1.83
55889040--55889224	81	2.3	80	78	4	194	32	8	20	37	1.83
55889092--55889380	27	10.7	27	83	0	310	30	8	21	39	1.84
55889149--55889380	27	8.6	27	85	0	322	30	8	20	40	1.82
55892632--55892827	68	2.9	68	81	7	204	24	28	15	31	1.96
55893226--55893285	28	2.1	28	96	0	111	36	20	5	38	1.74
55896251--55896424	46	3.8	46	73	14	169	22	18	28	29	1.98
55896245--55896416	93	1.8	93	90	2	274	22	19	28	29	1.98
55899347--55899389	15	2.9	15	82	0	59	13	18	11	55	1.68
55904840--55904908	14	4.7	15	80	10	88	13	18	10	57	1.63
55907298--55907470	93	1.9	93	87	2	258	21	21	28	28	1.99
55910313--55910344	16	2.0	16	93	0	55	25	21	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55915138--55915179	14	2.9	15	75	7	50	42	4	14	38	1.66
55918073--55918102	15	2.0	15	100	0	60	40	13	20	26	1.89
55919370--55919590	107	2.1	107	99	0	433	18	24	31	24	1.97
55928495--55928551	29	2.0	29	82	3	71	47	14	8	29	1.74
55931268--55931417	67	2.2	67	80	8	162	32	17	28	22	1.96
55931292--55931475	67	2.8	64	77	8	194	29	17	29	22	1.97
55935422--55935503	27	3.1	26	87	8	103	35	20	24	19	1.96
55944323--55944416	43	2.2	42	82	3	116	26	31	17	24	1.97
55951027--55951200	43	4.1	42	80	6	163	22	28	20	28	1.98
55951974--55952108	70	1.9	70	92	0	225	37	19	12	31	1.89
55954211--55954388	27	6.6	27	75	6	119	29	26	16	28	1.97
55954211--55954388	54	3.3	54	74	12	150	29	26	16	28	1.97
55967758--55967935	27	6.6	27	75	6	119	29	26	16	28	1.97
55967758--55967935	54	3.3	54	74	12	150	29	26	16	28	1.97
55970527--55970587	30	2.0	30	87	0	86	39	6	22	31	1.80
55971293--55971442	64	2.2	65	81	8	167	32	17	28	22	1.96
55971317--55971497	67	2.8	64	78	8	197	29	17	29	23	1.97
55974072--55974157	27	3.2	26	85	8	102	33	22	25	18	1.96
55977292--55977383	43	2.1	43	82	11	109	22	19	30	27	1.98
55983783--55983839	29	2.0	29	82	3	71	47	14	8	29	1.74
55983970--55984023	20	2.7	20	72	13	56	48	16	18	16	1.82
55985990--55986059	34	2.1	34	97	0	131	37	27	20	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55987006--55987090	15	5.7	15	71	19	54	4	23	2	69	1.19
55987026--55987090	24	2.8	24	73	21	66	4	24	1	69	1.16
55989442--55989498	29	2.0	29	82	3	71	47	14	8	29	1.74
55991714--55991767	27	2.0	27	85	0	72	38	7	14	38	1.75
55992047--55992176	50	2.6	49	85	3	154	26	15	27	30	1.96
55991999--55992190	49	3.9	49	74	8	154	29	17	25	28	1.97
55996201--55996689	163	3.0	163	99	0	951	34	11	24	28	1.91
55997904--55997957	27	2.0	27	85	0	72	38	7	16	37	1.77
56002413--56002542	60	2.2	60	86	5	174	26	23	20	30	1.98
56006732--56006861	60	2.2	60	82	8	149	28	23	18	30	1.98
56007492--56007521	8	3.8	8	90	0	51	3	23	20	53	1.60
56007489--56007521	16	2.1	16	100	0	66	6	24	18	51	1.68
56010059--56010161	37	2.8	37	93	0	170	23	31	21	24	1.99
56010302--56010546	48	5.0	48	94	3	409	31	27	5	35	1.80
56010302--56010546	99	2.5	97	92	2	411	31	27	5	35	1.80
56012679--56012724	22	2.0	23	84	12	60	23	17	0	58	1.38
56014155--56014475	40	8.0	40	95	0	570	27	30	21	20	1.98
56015748--56015850	37	2.8	37	95	0	179	23	32	21	23	1.98
56015990--56016235	48	5.0	48	92	3	384	31	26	6	35	1.82
56015990--56016235	98	2.5	97	89	3	386	31	26	6	35	1.82
56018761--56018793	11	2.7	13	81	18	52	45	9	0	45	1.35
56018768--56018794	11	2.5	11	100	0	54	44	7	0	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56020770--56020925	71	2.2	72	87	3	217	32	29	14	23	1.95
56020842--56021067	104	2.2	103	92	3	366	31	31	18	18	1.95
56021396--56021459	30	2.2	29	81	10	76	29	28	6	35	1.82
56021403--56021459	30	1.9	30	85	3	80	29	24	7	38	1.82
56028317--56028368	26	2.0	26	92	0	86	28	34	21	15	1.94
56028329--56028479	72	2.1	71	91	2	241	30	29	16	23	1.96
56028398--56028621	104	2.2	104	93	1	378	31	31	19	17	1.95
56028949--56029012	30	2.2	29	81	10	76	29	28	6	35	1.82
56028956--56029012	30	1.9	30	85	3	80	29	24	7	38	1.82
56038205--56038252	25	1.9	25	86	0	69	33	25	16	25	1.96
56038288--56038334	20	2.3	20	96	0	85	34	10	21	34	1.88
56038383--56038503	24	5.0	24	88	7	165	28	19	23	28	1.98
56038383--56038503	49	2.5	47	88	6	163	28	19	23	28	1.98
56038697--56038757	31	2.0	31	83	0	77	32	14	26	26	1.95
56050718--56050893	46	3.7	47	77	17	186	21	21	28	28	1.99
56050718--56050890	95	1.8	93	93	2	301	21	21	28	28	1.98
56051119--56051156	18	2.1	19	85	14	53	34	0	23	42	1.55
56058305--56058474	46	3.8	44	77	14	184	21	20	28	30	1.98
56058302--56058469	91	1.8	91	94	0	300	21	20	29	29	1.98
56058698--56058735	19	2.0	20	85	15	53	36	0	23	39	1.55
56062356--56062415	29	2.1	29	87	0	84	21	20	16	41	1.90
56062555--56062644	33	2.8	33	88	3	85	24	23	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56062565--56062650	33	2.7	32	90	3	129	22	24	26	26	2.00
56081571--56081607	19	2.0	19	89	5	58	18	2	10	67	1.32
56091194--56091251	27	2.1	27	84	6	73	43	15	12	29	1.83
56099651--56099756	28	3.8	28	81	3	115	23	33	13	30	1.93
56099977--56100011	16	2.2	16	90	10	54	11	22	17	48	1.79
56105650--56105797	79	1.9	80	90	4	237	26	22	27	24	2.00
56105650--56105820	79	2.2	79	86	6	231	27	22	26	23	2.00
56105650--56105797	40	3.7	40	90	4	237	26	22	27	24	2.00
56108834--56109393	143	3.9	139	94	2	840	32	8	29	29	1.87
56108834--56109393	47	11.7	47	95	1	931	32	8	29	29	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290