genome.fa.s7.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  114  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35379537--35379719	79	2.3	81	84	7	232	24	22	27	25	2.00
35379537--35379721	40	4.6	41	84	7	231	23	22	28	25	2.00
35379590--35379756	79	2.1	79	83	6	205	25	20	27	25	1.99
35394240--35394267	11	2.5	11	100	0	56	64	7	28	0	1.20
35399443--35399627	79	2.3	81	86	4	252	26	27	22	23	1.99
35399424--35399627	40	5.1	40	86	5	254	25	27	22	24	2.00
35407487--35407619	40	3.3	40	95	2	232	27	27	21	24	1.99
35411851--35411945	6	15.7	6	82	10	122	16	2	0	81	0.80
35415490--35415590	50	2.0	50	100	0	202	25	16	21	35	1.95
35423302--35423451	46	3.2	46	73	10	142	22	30	18	29	1.97
35426798--35426969	49	3.6	48	72	9	156	27	18	27	26	1.98
35428249--35428289	22	1.9	21	85	5	55	12	41	26	19	1.87
35435146--35435175	12	2.5	12	100	0	60	6	10	43	40	1.64
35440403--35440447	13	3.3	13	79	11	54	68	2	2	26	1.12
35453453--35453525	31	2.5	31	80	6	80	52	0	17	30	1.46
35453922--35454056	40	3.3	39	79	8	126	29	13	24	32	1.93
35456582--35456623	11	4.0	11	81	12	61	9	26	2	61	1.39
35459166--35459434	47	5.8	46	75	11	138	30	18	27	23	1.98
35459217--35459435	46	4.7	46	79	10	162	30	18	28	22	1.97
35459217--35459433	93	2.3	95	80	8	239	30	18	28	23	1.97
35462588--35462950	46	7.7	48	76	10	288	24	29	19	26	1.98
35462585--35462953	94	3.9	96	77	10	334	24	29	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35462585--35462951	140	2.6	142	78	10	385	24	29	19	26	1.98
35465331--35465370	20	2.0	20	90	0	62	32	12	27	27	1.93
35470459--35470725	138	1.9	138	92	0	444	24	22	30	23	1.99
35474183--35474368	40	4.7	40	88	5	243	26	27	22	24	2.00
35478574--35478668	40	2.4	42	82	7	108	29	29	15	25	1.96
35478574--35478679	40	2.7	40	79	2	106	31	28	16	24	1.96
35479289--35479324	18	2.0	18	89	10	56	61	13	5	19	1.52
35482540--35482578	18	2.1	19	90	4	62	33	2	33	30	1.72
35488917--35490314	702	2.0	701	93	1	2408	39	18	8	33	1.81
35502116--35502247	43	3.1	43	94	0	237	43	20	21	15	1.88
35517010--35517079	25	2.8	25	81	12	72	38	2	0	58	1.13
35524967--35525008	21	2.0	21	100	0	84	19	14	19	47	1.82
35527310--35527470	20	8.3	19	68	20	93	37	2	1	59	1.19
35527311--35527454	19	7.5	19	67	20	77	36	2	1	59	1.21
35527369--35527448	38	2.2	35	84	10	99	32	5	1	61	1.26
35527310--35527470	9	16.7	9	69	23	80	37	2	1	59	1.19
35527310--35527454	57	2.5	56	77	14	145	36	2	1	59	1.21
35529777--35529846	22	3.2	22	79	4	79	18	28	15	37	1.92
35529772--35529866	44	2.2	41	81	9	102	18	27	17	35	1.94
35529810--35529888	41	1.9	41	84	5	106	22	30	17	29	1.97
35534232--35534490	108	2.4	108	84	3	371	38	5	10	45	1.61
35538289--35538326	11	3.5	11	85	10	51	18	28	0	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35538619--35538650	15	2.1	15	100	0	64	37	25	6	31	1.81
35542532--35542586	25	2.3	25	77	20	64	43	1	18	36	1.61
35542960--35543000	22	1.9	21	85	5	55	70	4	19	4	1.24
35543663--35543692	3	10.0	3	92	0	51	33	0	3	63	1.11
35543993--35544110	51	2.2	53	83	4	141	16	19	22	40	1.91
35550085--35550116	3	10.7	3	100	0	64	0	34	0	65	0.93
35556733--35556782	21	2.4	20	80	9	55	44	36	2	18	1.61
35558513--35558550	17	2.2	17	86	9	51	71	5	0	23	1.07
35563321--35563367	19	2.3	20	82	10	60	36	0	14	48	1.44
35563713--35563906	50	3.9	50	76	4	201	25	18	25	30	1.98
35563720--35563906	101	1.9	101	87	0	275	25	18	26	30	1.98
35564451--35564806	180	2.0	179	86	2	491	40	8	19	32	1.81
35566956--35567319	47	7.8	48	73	14	239	27	20	29	22	1.98
35566959--35567319	94	3.9	93	79	12	400	27	19	29	22	1.98
35566956--35567319	141	2.6	143	77	10	385	27	20	29	22	1.98
35573088--35573262	45	3.8	46	79	13	216	29	29	20	20	1.98
35573095--35573265	93	1.8	92	96	1	315	28	29	21	21	1.98
35573683--35573742	30	2.0	30	86	0	84	31	25	6	36	1.82
35581795--35581830	17	2.1	17	100	0	72	36	11	22	30	1.89
35582252--35582409	42	3.7	42	80	5	167	31	15	24	29	1.95
35583096--35583139	23	2.0	22	86	4	61	18	4	31	45	1.69
35604349--35604379	11	2.8	11	100	0	62	22	0	29	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35609353--35609377	13	1.9	13	100	0	50	40	28	32	0	1.57
35611682--35611743	26	2.4	25	81	2	79	19	25	20	33	1.96
35611721--35611768	23	2.1	23	84	0	60	16	27	22	33	1.96
35611660--35611850	25	7.7	25	68	15	87	19	25	19	35	1.96
35611707--35611847	73	1.9	73	84	8	189	19	24	20	34	1.96
35618353--35618382	13	2.3	13	94	0	51	3	20	0	76	0.92
35618362--35618403	18	2.5	17	82	17	52	4	19	2	73	1.12
35622059--35622092	10	3.3	10	88	8	50	58	14	20	5	1.57
35631584--35631631	20	2.7	18	79	17	55	41	16	0	41	1.48
35631588--35631627	20	2.0	20	95	0	71	37	17	0	45	1.49
35640303--35640437	56	2.4	56	91	2	209	25	12	27	34	1.92
35643196--35643885	345	2.0	345	100	0	1380	33	11	20	35	1.87
35658391--35658430	20	2.0	20	95	0	71	25	17	35	22	1.95
35658550--35658603	27	2.0	27	82	7	65	27	20	20	31	1.97
35663675--35663733	26	2.3	25	91	8	93	37	6	15	40	1.74
35668583--35668665	40	2.1	40	90	0	130	24	15	20	39	1.91
35673520--35673550	15	2.1	15	93	0	53	38	3	6	51	1.44
35697625--35697843	48	4.7	46	75	12	146	26	28	17	27	1.98
35702232--35702278	16	3.0	15	77	20	51	44	2	0	53	1.12
35702230--35702279	10	4.7	11	74	16	52	46	2	0	52	1.12
35702230--35702279	22	2.3	23	83	16	72	46	2	0	52	1.12
35702465--35702498	17	1.9	18	88	5	52	50	5	5	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35705814--35705865	25	2.1	25	96	0	95	28	7	23	40	1.82
35708996--35709025	15	1.9	16	93	6	53	36	13	0	50	1.42
35710943--35711003	30	2.0	30	83	0	77	31	22	8	37	1.84
35729749--35729827	22	3.6	22	82	0	95	21	24	11	43	1.85
35733482--35733515	17	2.1	15	89	10	50	14	5	0	79	0.91
35735282--35735317	2	17.5	2	94	5	63	47	0	2	50	1.15
35736869--35736898	13	2.3	13	94	0	51	60	0	0	40	0.97
35737068--35737108	21	2.0	21	90	4	66	63	4	0	31	1.15
35737068--35737111	22	2.0	21	86	4	61	63	4	0	31	1.14
35737374--35737489	17	6.6	17	75	18	71	31	1	2	63	1.18
35737373--35737434	9	7.2	8	75	17	54	29	1	3	66	1.17
35737415--35737465	25	2.1	23	85	7	66	33	0	3	62	1.13
35737411--35737457	16	2.9	17	84	6	62	29	0	4	65	1.11
35739386--35739746	46	7.6	47	72	13	196	27	18	30	24	1.98
35739567--35739742	96	1.8	96	82	6	228	25	19	30	25	1.98
35740468--35740494	10	2.7	10	100	0	54	0	14	51	33	1.43
35743808--35744032	111	2.0	111	86	1	308	23	15	24	37	1.93
35758612--35758671	28	2.1	28	81	6	68	21	30	23	25	1.99
35759332--35759436	52	2.0	53	94	1	185	36	17	19	27	1.94
35760630--35760680	23	2.0	26	82	17	63	17	3	25	52	1.61
35760639--35760684	23	2.0	23	100	0	92	17	4	26	52	1.63
35784687--35784743	28	2.0	29	89	3	89	21	21	38	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35796090--35796178	28	3.2	28	91	3	144	33	26	7	31	1.85
35796287--35796376	27	3.2	27	78	7	92	20	25	23	31	1.98
35801050--35801122	36	2.0	36	100	0	146	34	19	8	38	1.81
35805219--35805278	23	2.6	23	92	5	95	38	21	0	40	1.54
35805657--35805691	13	2.5	14	90	9	54	45	0	0	54	0.99
35808983--35809151	43	4.0	43	73	9	150	25	15	26	31	1.96
35815642--35815683	19	2.2	19	83	8	50	71	0	23	4	1.05
35829617--35829751	68	2.0	68	89	1	207	48	6	2	41	1.44
35829626--35829770	68	2.1	69	83	3	177	51	4	2	41	1.38
35839687--35839757	35	2.0	35	88	0	106	28	14	14	43	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290