genome.fa.s7.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  182  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58595034--58595107	30	2.5	30	86	8	98	21	20	18	39	1.93
58595034--58595098	20	3.2	20	71	16	53	23	21	16	38	1.93
58597274--58597358	30	2.8	30	81	0	116	22	27	9	41	1.84
58600653--58600723	29	2.4	30	80	2	81	23	26	12	36	1.91
58602537--58602586	25	2.0	25	84	0	64	32	20	12	36	1.89
58607029--58607141	54	2.1	54	86	3	156	23	32	18	25	1.97
58608196--58608447	30	8.4	30	71	9	147	24	21	13	40	1.90
58608194--58608418	90	2.5	90	84	2	274	24	23	13	38	1.91
58609864--58610028	43	3.9	44	74	10	128	27	16	23	32	1.96
58613693--58613771	37	2.1	37	88	4	115	25	30	18	25	1.98
58613890--58614755	47	18.4	47	95	1	1531	29	29	8	32	1.87
58621389--58621548	42	3.8	42	80	4	171	32	16	21	29	1.95
58627049--58627160	27	4.2	26	85	7	143	37	23	23	16	1.93
58627049--58627160	54	2.1	54	91	3	181	37	23	23	16	1.93
58634914--58635025	27	4.2	26	83	7	125	36	20	24	18	1.95
58634914--58635025	54	2.1	54	84	3	145	36	20	24	18	1.95
58635131--58635193	26	2.3	26	83	5	72	28	9	26	34	1.88
58639854--58640029	46	3.8	44	74	14	160	22	19	27	30	1.98
58639850--58640021	93	1.8	93	88	2	265	22	20	28	29	1.98
58645352--58645405	20	2.7	20	82	0	63	24	20	18	37	1.94
58645352--58645425	30	2.5	30	86	8	98	21	20	18	39	1.93
58645352--58645416	20	3.2	20	71	16	53	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58647011--58647044	13	2.8	12	91	8	52	76	5	2	14	1.09
58648108--58648141	15	2.3	15	94	0	59	79	2	17	0	0.86
58648124--58648213	6	14.7	6	69	7	56	70	2	20	7	1.23
58648128--58648168	18	2.3	18	91	0	64	70	4	17	7	1.28
58648174--58648211	13	2.8	13	82	17	51	73	0	18	7	1.06
58648175--58648225	21	2.4	21	74	6	50	74	1	17	5	1.11
58648228--58648290	33	1.9	33	84	12	85	53	6	26	12	1.62
58650062--58650115	20	2.7	20	82	0	63	24	20	18	37	1.94
58650062--58650135	30	2.5	30	86	8	98	21	20	18	39	1.93
58650062--58650126	20	3.2	20	71	16	53	23	21	16	38	1.93
58653513--58653735	45	5.0	45	82	2	178	24	16	25	34	1.95
58653528--58653735	90	2.3	90	80	3	256	24	17	25	32	1.97
58653774--58653812	16	2.4	17	91	4	62	48	35	5	10	1.59
58655364--58655450	29	3.0	29	80	8	115	25	13	31	29	1.94
58666807--58667180	192	2.0	190	84	3	491	27	30	16	24	1.97
58666811--58667180	48	7.7	48	83	3	424	27	30	16	24	1.97
58670198--58670258	30	2.0	30	83	0	77	39	6	26	27	1.81
58670768--58670975	67	3.2	66	73	12	187	31	16	29	22	1.96
58672389--58672492	27	3.8	26	82	7	118	17	23	22	37	1.94
58672389--58672500	54	2.1	54	84	3	145	16	23	23	37	1.93
58673356--58673444	30	3.0	30	79	11	94	56	15	17	10	1.67
58673356--58673438	15	5.6	14	73	10	58	55	16	18	9	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58673367--58673444	15	5.2	15	75	9	70	55	15	17	11	1.69
58677873--58678025	42	3.7	40	76	13	139	30	18	24	27	1.98
58679915--58680045	68	1.9	69	85	1	183	49	8	4	37	1.54
58683020--58683070	22	2.4	22	86	3	68	9	31	41	17	1.82
58684842--58685025	39	4.7	40	82	8	198	25	26	22	25	2.00
58684823--58685025	40	5.1	40	80	9	220	25	26	22	25	2.00
58692762--58692946	79	2.3	82	84	7	238	25	27	22	24	2.00
58692743--58692946	40	5.1	40	82	8	238	25	27	22	25	2.00
58696887--58696946	27	2.3	27	85	2	77	21	23	20	35	1.96
58705316--58705365	25	2.0	25	84	0	64	46	14	6	34	1.69
58706443--58706480	18	2.1	19	85	5	51	50	15	10	23	1.75
58706677--58706713	18	2.1	18	90	5	58	16	37	27	18	1.92
58709611--58709643	5	6.6	5	100	0	66	0	21	0	78	0.75
58711016--58711085	34	2.1	34	94	0	122	44	20	4	31	1.70
58711802--58711927	43	2.9	43	78	9	139	26	27	19	26	1.99
58714224--58714300	27	2.9	27	80	3	93	27	22	18	32	1.97
58719316--58719420	27	3.9	26	81	9	104	18	23	20	38	1.93
58719316--58719420	54	1.9	54	82	3	131	18	23	20	38	1.93
58722807--58723260	47	9.6	47	90	2	637	33	8	29	27	1.87
58726069--58726181	54	2.1	54	85	3	147	17	23	21	38	1.94
58726069--58726181	27	4.2	26	83	7	127	17	23	21	38	1.94
58735402--58735456	15	3.8	15	85	2	69	1	21	1	74	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58741575--58741697	22	5.3	22	66	24	74	34	11	28	26	1.91
58741268--58741720	47	9.6	47	92	0	728	33	11	28	26	1.91
58741714--58741802	46	1.9	46	86	0	124	33	12	31	22	1.91
58743681--58743804	43	2.9	43	78	7	146	28	23	16	32	1.96
58746320--58746451	27	4.9	27	85	0	147	39	18	15	26	1.91
58747382--58747423	23	1.9	21	90	9	66	30	19	23	26	1.98
58748898--58749025	49	2.6	49	81	3	150	28	30	14	25	1.95
58749046--58749209	46	3.5	45	79	9	179	21	29	18	29	1.97
58755803--58755903	37	2.7	37	95	0	184	24	30	18	25	1.98
58755911--58756078	78	2.2	78	98	0	327	30	20	22	26	1.98
58756100--58756949	47	17.7	47	91	2	1304	29	28	8	33	1.87
58756100--58756949	96	8.9	94	91	2	1304	29	28	8	33	1.87
58760768--58761039	40	6.8	40	93	0	436	25	29	22	23	1.99
58762309--58762409	37	2.7	37	98	0	193	24	31	18	24	1.98
58762528--58763322	47	16.7	47	93	2	1320	29	29	8	32	1.86
58768371--58768493	28	4.4	28	88	2	167	26	12	27	33	1.92
58768371--58768493	55	2.2	57	86	2	169	26	12	27	33	1.92
58768396--58768506	28	4.0	27	88	3	89	29	11	25	33	1.91
58776404--58776526	28	4.4	28	88	2	167	26	12	27	33	1.92
58776404--58776526	55	2.2	57	86	2	169	26	12	27	33	1.92
58776429--58776539	28	4.0	27	88	3	89	29	11	25	33	1.91
58786818--58787064	55	4.7	52	79	10	211	20	24	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58786857--58787053	108	1.8	110	88	4	310	22	25	17	34	1.95
58809324--58809510	40	4.7	40	82	8	211	26	27	21	24	1.99
58815197--58815453	55	4.8	55	72	12	200	22	27	15	34	1.94
58820875--58820979	47	2.2	47	93	0	174	36	7	29	26	1.84
58831529--58831579	20	2.6	21	81	12	63	15	31	33	19	1.93
58836730--58836779	18	2.8	18	87	0	73	14	28	0	58	1.37
58836705--58836786	24	3.4	24	77	0	101	12	26	0	60	1.31
58836783--58836879	42	2.3	42	91	1	151	14	23	5	56	1.58
58836790--58836857	21	3.2	21	65	8	57	11	22	7	58	1.57
58839297--58839331	10	3.5	10	88	0	52	40	22	22	14	1.90
58839294--58839341	20	2.4	20	71	0	51	33	18	27	20	1.96
58843355--58843770	132	3.2	130	79	4	399	30	19	16	33	1.94
58843572--58843822	132	1.9	131	81	5	301	28	17	17	36	1.93
58853052--58853116	20	3.3	19	73	16	51	38	16	21	23	1.93
58857045--58857440	133	3.0	132	91	1	612	27	19	24	28	1.99
58859556--58859833	130	2.1	131	82	4	346	30	20	16	32	1.95
58859771--58860021	132	1.9	132	82	4	319	27	17	19	36	1.93
58875892--58875935	23	1.9	23	81	9	54	36	27	0	36	1.57
58882666--58882934	46	5.7	46	75	10	199	23	29	18	28	1.98
58884953--58885171	40	5.4	40	83	6	273	26	26	22	24	2.00
58884953--58885171	83	2.7	80	85	5	273	26	26	22	24	2.00
58887739--58888298	47	11.7	47	93	3	931	32	8	29	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58887739--58888298	96	5.9	92	93	3	781	32	8	29	29	1.87
58887739--58888298	192	2.9	192	94	2	961	32	8	29	29	1.87
58897233--58897456	40	5.6	40	85	6	301	25	26	23	24	2.00
58897233--58897456	83	2.8	80	86	4	308	25	26	23	24	2.00
58903277--58903314	19	1.9	20	84	10	51	73	15	0	10	1.09
58905274--58905347	30	2.5	30	84	2	87	40	9	10	39	1.73
58905727--58905815	31	3.0	30	74	11	85	42	14	8	33	1.77
58907553--58907601	23	2.1	23	85	7	64	38	0	12	48	1.41
58907763--58907807	23	1.9	24	90	4	74	40	2	0	57	1.11
58926706--58926775	21	3.2	21	70	18	70	40	27	12	20	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290