genome.fa.s7.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  199  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63653220--63653298	37	2.1	37	88	4	115	25	30	18	25	1.98
63653417--63654046	47	13.4	47	95	0	1080	29	29	8	32	1.87
63656565--63656672	56	1.9	55	92	1	180	39	12	9	38	1.74
63662690--63662777	28	3.1	28	63	18	65	40	11	9	38	1.73
63662911--63662960	26	1.9	26	95	0	91	52	18	2	28	1.56
63668012--63668186	46	3.8	45	78	13	185	20	21	30	27	1.98
63668007--63668179	93	1.9	93	92	0	292	20	21	30	26	1.98
63669487--63669701	48	4.5	48	78	6	215	28	19	26	25	1.98
63673909--63674111	41	5.0	41	89	3	284	33	23	22	19	1.97
63674273--63674312	14	2.9	14	80	0	53	25	0	27	47	1.52
63674279--63674363	21	3.7	21	71	19	71	27	3	28	41	1.72
63674283--63674379	49	2.0	46	90	5	149	29	4	25	40	1.74
63674924--63674968	14	3.2	14	93	0	81	22	0	28	48	1.50
63675232--63675301	32	2.1	34	82	7	83	64	4	2	28	1.27
63679408--63679454	19	2.5	19	76	10	51	21	2	4	72	1.12
63681932--63681997	32	2.1	32	94	0	114	33	13	13	39	1.84
63684971--63685161	53	3.6	53	74	11	158	43	1	29	25	1.61
63684971--63685093	54	2.3	54	80	9	128	43	1	29	25	1.64
63685207--63685243	9	4.1	9	89	0	56	27	0	13	59	1.35
63686818--63686849	6	5.3	6	92	0	55	81	0	18	0	0.70
63687325--63687354	15	2.0	15	93	0	51	36	0	13	50	1.42
63688099--63688357	43	6.0	43	87	4	362	27	15	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63688099--63688357	128	2.0	129	87	3	371	27	15	26	31	1.95
63691200--63691546	27	13.0	27	80	4	357	43	20	17	19	1.89
63691945--63692018	34	2.2	34	85	0	103	31	21	20	27	1.98
63694687--63695124	161	2.7	160	85	5	555	41	20	17	20	1.90
63694687--63695116	27	16.0	27	86	2	481	41	20	17	20	1.90
63696675--63696825	28	5.4	28	91	1	223	33	27	12	26	1.93
63699077--63699163	34	2.6	34	77	14	90	28	20	18	32	1.96
63706705--63706824	38	3.1	38	84	2	150	32	23	21	22	1.98
63706734--63706853	38	3.1	37	81	11	127	29	23	23	24	1.99
63706688--63706853	78	2.1	78	81	6	185	31	25	21	21	1.98
63710470--63710569	29	3.4	29	73	10	105	30	27	21	22	1.98
63710404--63710572	58	2.9	58	90	0	259	30	28	18	22	1.98
63710726--63710861	43	3.2	43	95	0	236	31	34	22	11	1.89
63712415--63712534	38	3.1	38	82	2	150	33	23	20	22	1.97
63712398--63712563	78	2.1	78	82	6	194	32	25	20	21	1.97
63717592--63717788	54	3.7	53	73	8	166	18	23	19	38	1.93
63721374--63721947	47	12.2	47	95	1	999	33	11	28	26	1.91
63721961--63722064	46	2.3	46	93	0	172	36	7	30	25	1.84
63729161--63729305	53	2.7	55	79	4	152	20	22	17	38	1.93
63735948--63736123	27	6.6	27	83	5	196	29	28	15	26	1.96
63735972--63736122	82	1.9	81	88	4	232	29	27	15	27	1.96
63743124--63743301	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63743145--63743300	82	1.9	81	88	3	233	29	28	15	26	1.96
63750701--63750770	28	2.5	28	83	0	86	30	8	27	34	1.87
63752477--63752528	26	2.0	26	96	0	95	23	9	19	48	1.78
63754345--63754403	27	2.2	27	84	6	75	25	16	25	32	1.97
63755668--63755727	30	2.0	30	93	0	102	11	35	13	40	1.81
63759631--63759710	29	2.7	29	77	9	90	31	15	16	37	1.89
63767349--63767491	27	5.3	27	89	0	214	36	20	16	26	1.94
63767708--63767743	17	2.1	18	94	5	65	11	36	38	13	1.81
63769505--63769724	47	4.7	47	82	7	243	27	20	30	21	1.98
63769502--63769724	94	2.4	93	87	5	306	27	20	30	21	1.98
63776713--63776764	19	2.7	19	71	8	52	25	3	15	55	1.57
63776852--63776972	43	2.9	42	81	7	154	30	14	24	29	1.95
63785953--63785977	13	1.9	13	100	0	50	8	32	36	24	1.84
63788531--63788755	40	5.6	39	81	7	197	25	20	28	25	1.99
63788531--63788755	80	2.8	79	83	4	265	25	20	28	25	1.99
63788531--63788788	80	3.2	80	81	6	206	26	20	27	24	1.99
63791270--63791344	37	2.0	37	87	5	107	26	30	20	22	1.98
63791467--63791766	47	6.4	47	93	0	494	28	30	9	32	1.88
63798154--63798316	45	3.6	45	74	14	163	28	28	20	22	1.98
63805636--63805802	90	1.8	91	86	6	241	29	28	20	22	1.98
63812056--63812314	45	5.6	45	82	9	222	29	32	8	29	1.87
63812093--63812337	45	5.3	46	85	8	331	31	30	8	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63812093--63812337	93	2.7	92	88	8	349	31	30	8	29	1.88
63817461--63817634	46	3.8	45	78	14	187	20	20	29	29	1.98
63824990--63825164	46	3.8	46	78	14	207	20	20	29	29	1.98
63824987--63825157	92	1.8	93	94	1	308	21	21	29	28	1.98
63828883--63828930	20	2.4	20	82	0	60	31	20	27	20	1.98
63828953--63829032	20	4.0	20	80	0	97	45	18	23	12	1.84
63830986--63831089	53	2.0	53	88	0	154	25	25	25	24	2.00
63834808--63834941	27	5.0	27	89	0	187	35	20	19	25	1.96
63834838--63834953	54	2.1	54	88	0	169	36	20	18	24	1.95
63835122--63835173	27	1.9	27	88	0	77	23	23	19	34	1.96
63838473--63838679	53	3.8	54	79	1	227	20	24	18	36	1.95
63841316--63841557	40	6.1	40	86	2	303	23	28	23	24	2.00
63843344--63843485	24	6.0	23	79	10	135	23	22	20	33	1.97
63843344--63843493	71	2.1	74	83	8	193	23	23	20	33	1.97
63853092--63853167	39	1.9	39	89	0	116	30	28	13	27	1.94
63866803--63866840	8	4.8	8	87	6	51	23	0	2	73	0.95
63868097--63868234	20	7.0	20	85	3	163	13	25	16	44	1.85
63868097--63868234	59	2.3	59	87	2	188	13	25	16	44	1.85
63868097--63868219	39	3.1	39	86	1	174	14	25	16	43	1.85
63868655--63868698	21	2.1	21	82	0	52	45	2	2	50	1.27
63873027--63873076	19	2.5	21	80	6	59	22	38	26	14	1.91
63874510--63874661	56	2.8	54	81	5	171	30	34	17	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63878301--63878346	17	2.6	17	86	6	56	26	26	34	13	1.92
63878519--63878767	27	9.2	27	86	0	327	39	19	9	31	1.84
63878519--63878839	27	11.9	26	81	9	209	38	19	9	31	1.85
63878519--63878839	81	4.0	80	85	3	245	38	19	9	31	1.85
63878871--63879172	27	11.2	27	87	2	428	33	19	21	25	1.97
63879625--63879689	22	3.0	21	73	13	60	21	24	21	32	1.98
63879848--63879949	27	3.8	27	83	5	107	19	22	20	37	1.95
63879840--63879949	54	2.1	52	81	3	121	19	22	20	38	1.94
63880110--63880202	6	15.2	6	73	12	64	22	17	11	48	1.79
63880098--63880197	31	3.2	31	81	0	119	22	17	13	48	1.81
63881158--63881326	93	1.8	93	89	0	266	28	26	20	24	1.99
63881148--63881323	46	3.8	46	76	12	180	29	26	20	23	1.99
63883699--63883762	15	4.4	15	84	11	89	60	12	15	10	1.58
63883692--63883764	30	2.5	28	82	12	94	58	15	15	10	1.62
63893832--63893864	16	2.0	17	88	5	50	57	9	3	30	1.45
63897664--63897720	30	1.9	30	96	0	105	31	24	15	28	1.96
63904883--63904950	29	2.3	29	85	5	93	27	30	13	27	1.94
63905052--63905130	29	2.7	30	82	13	110	29	30	15	25	1.96
63913021--63913088	29	2.3	29	85	5	93	27	30	13	27	1.94
63917313--63917371	24	2.5	24	91	5	93	27	22	18	32	1.97
63917422--63917469	20	2.3	20	96	3	87	33	20	10	35	1.87
63925309--63925453	25	6.0	23	82	8	157	27	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63925511--63925567	9	5.9	9	73	15	51	35	21	8	35	1.84
63925499--63925569	20	3.5	20	94	0	124	32	21	11	35	1.89
63925504--63925558	11	5.4	11	70	16	55	30	20	12	36	1.90
63927959--63928558	94	6.4	94	78	1	450	27	17	16	37	1.92
63928118--63928558	188	2.3	188	83	2	537	27	17	17	37	1.92
63928017--63928553	282	1.9	281	79	6	595	27	17	17	37	1.92
63934825--63934879	15	3.7	15	85	9	78	12	14	10	61	1.56
63937276--63937448	46	3.7	46	76	13	192	22	21	26	29	1.99
63937273--63937443	93	1.8	93	93	0	297	22	21	27	28	1.99
63939490--63939595	53	2.0	53	100	0	212	37	13	15	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290