genome.fa.s7.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  122  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38211626--38211734	41	2.6	43	80	11	111	24	20	28	26	1.99
38219918--38220050	45	3.0	44	75	11	132	27	16	23	33	1.96
38219954--38220037	41	2.1	41	82	8	102	27	16	23	32	1.96
38222545--38222627	9	9.2	9	90	0	103	40	24	9	25	1.85
38222718--38222772	28	1.9	29	88	3	85	23	1	25	49	1.60
38223248--38223312	27	2.4	27	89	0	103	33	18	23	24	1.96
38223449--38223500	27	2.0	26	84	3	68	21	23	21	34	1.97
38223667--38223726	28	2.1	28	84	0	75	25	23	21	30	1.99
38230879--38231085	40	5.2	40	85	4	260	25	21	27	26	2.00
38239095--38239301	40	5.2	40	86	4	269	24	21	27	26	1.99
38239095--38239311	119	1.8	119	82	9	282	24	21	27	26	1.99
38241738--38241856	27	4.4	27	86	0	166	27	21	8	42	1.82
38241738--38241856	54	2.2	54	89	0	184	27	21	8	42	1.82
38241869--38241968	27	3.7	27	83	0	128	39	21	12	28	1.88
38241952--38242093	27	5.3	27	83	0	176	35	19	20	24	1.96
38241925--38242094	54	3.1	54	82	1	153	35	20	19	24	1.96
38241921--38242094	81	2.1	80	79	6	188	35	20	19	24	1.95
38243419--38243558	69	2.0	69	92	0	235	37	13	17	31	1.89
38244775--38244896	27	4.6	27	83	2	75	35	20	8	36	1.83
38244820--38244964	27	5.4	27	90	1	211	27	23	9	39	1.86
38244795--38244979	80	2.3	81	83	2	239	31	23	9	35	1.86
38244977--38245039	27	2.3	27	86	0	90	39	19	11	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38245051--38245192	27	5.3	27	80	0	167	35	19	19	26	1.95
38245395--38245477	25	3.4	25	91	1	123	27	22	24	25	2.00
38245395--38245489	50	1.9	50	82	8	122	26	24	24	25	2.00
38255448--38255474	14	1.9	14	100	0	54	40	0	29	29	1.57
38257260--38257301	21	2.0	21	100	0	84	38	19	14	28	1.90
38269685--38269926	40	6.0	41	88	2	327	26	27	21	24	2.00
38272282--38272401	43	2.8	42	75	13	120	26	20	25	26	1.99
38285206--38285429	27	8.3	27	80	2	225	36	17	20	25	1.94
38285206--38285441	81	2.9	80	83	1	256	35	18	19	26	1.95
38288165--38288195	16	2.0	16	93	6	55	29	0	19	51	1.47
38289352--38289506	40	3.9	40	83	3	188	17	29	14	38	1.90
38294841--38294876	18	2.0	18	94	0	63	41	5	19	33	1.75
38311721--38311788	28	2.4	28	88	9	95	32	26	13	27	1.93
38326976--38327028	27	1.9	27	84	3	70	41	13	11	33	1.80
38326985--38327083	27	3.7	27	83	5	103	40	19	11	29	1.86
38327069--38327129	27	2.3	27	85	0	77	34	27	6	31	1.83
38327080--38327263	27	6.8	27	86	2	208	29	23	7	40	1.81
38327242--38327408	27	6.2	27	77	5	142	38	22	8	30	1.84
38327161--38327389	54	4.2	54	79	3	156	34	20	8	36	1.84
38327242--38327493	81	3.1	79	73	8	204	37	21	9	31	1.86
38327256--38327493	54	4.4	55	77	6	198	38	20	10	31	1.85
38327419--38327470	27	1.9	27	88	7	79	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38327511--38327584	27	2.7	27	76	12	71	39	22	18	18	1.93
38327524--38327588	27	2.4	27	82	5	78	36	20	23	20	1.95
38328634--38328681	25	1.9	25	86	0	69	37	22	14	25	1.92
38328724--38328764	20	2.0	20	95	0	73	34	9	21	34	1.87
38328769--38328846	39	2.0	39	100	0	156	25	5	30	38	1.78
38328854--38328971	23	5.1	23	86	4	175	27	19	21	32	1.97
38329186--38329266	31	2.6	30	82	9	99	33	16	25	24	1.96
38332755--38332813	21	2.8	21	84	0	82	22	37	28	11	1.89
38337028--38337168	43	3.3	43	71	15	121	31	24	15	29	1.96
38342262--38342493	49	4.7	49	79	3	248	30	26	16	26	1.97
38342262--38342487	100	2.3	98	84	2	272	30	26	16	26	1.96
38344394--38344454	30	2.0	30	84	6	79	31	22	6	39	1.80
38353047--38353336	47	6.1	47	89	3	418	31	12	30	25	1.92
38353322--38353445	46	2.7	46	89	0	185	34	9	30	25	1.88
38353120--38353391	141	1.9	140	82	10	342	31	12	31	23	1.92
38353629--38353739	37	3.0	37	93	0	186	21	18	30	29	1.97
38356200--38356260	30	2.0	30	84	12	81	31	24	4	39	1.77
38370777--38370834	30	1.9	30	86	6	82	31	27	3	37	1.73
38372777--38372806	16	1.9	15	93	6	51	46	23	26	3	1.68
38373224--38373330	27	4.0	26	82	11	119	18	22	21	37	1.94
38373224--38373330	54	2.0	53	87	5	153	18	22	21	37	1.94
38375623--38375725	37	2.8	37	94	2	172	24	31	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38375866--38376386	48	10.9	48	97	0	970	30	28	6	34	1.82
38383705--38383814	27	4.0	27	83	9	125	38	20	21	20	1.94
38383702--38383815	55	2.1	53	83	6	140	37	21	21	19	1.94
38383927--38383979	25	2.1	26	92	3	90	28	9	24	37	1.86
38388529--38388558	15	2.0	15	93	0	51	23	0	33	43	1.54
38401568--38401686	27	4.4	27	94	0	211	27	22	9	40	1.84
38401541--38401686	54	2.7	54	86	0	211	29	23	9	37	1.86
38401685--38401816	27	4.9	27	76	9	117	38	20	11	29	1.87
38401718--38401816	27	3.7	27	83	4	128	40	22	8	29	1.82
38401718--38401898	54	3.3	55	77	9	156	42	19	7	29	1.79
38401945--38402018	27	2.7	27	76	12	71	39	21	18	20	1.93
38402832--38402901	25	2.8	25	84	0	86	28	21	21	28	1.99
38403121--38403203	31	2.7	31	88	3	107	30	13	25	31	1.93
38403132--38403203	31	2.4	31	95	2	128	29	12	25	33	1.92
38406391--38406685	41	7.2	41	79	3	236	20	25	16	37	1.93
38406394--38406685	82	3.6	83	76	6	265	20	25	16	37	1.93
38412762--38412983	48	4.6	48	87	0	300	26	18	28	26	1.98
38415987--38416023	18	2.1	18	100	0	74	27	29	10	32	1.90
38425495--38425715	40	5.6	40	84	6	254	22	22	28	26	1.99
38425503--38425715	80	2.7	79	88	4	288	21	22	29	26	1.99
38434000--38434178	40	4.6	39	84	5	220	22	22	28	25	1.99
38434000--38434178	78	2.3	79	85	3	238	22	22	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38452256--38452351	40	2.4	41	86	6	126	25	32	17	25	1.97
38453400--38453501	27	3.8	27	84	3	118	32	9	18	39	1.84
38456375--38456469	33	3.0	32	76	17	101	27	24	21	27	1.99
38456400--38456464	28	2.3	27	76	7	67	29	24	21	24	1.99
38456916--38456991	27	2.8	26	88	4	107	32	7	18	40	1.79
38472279--38472321	22	2.0	22	90	9	70	37	25	0	37	1.56
38476763--38476853	30	3.0	30	80	3	85	28	13	19	38	1.89
38476784--38476857	30	2.5	31	80	6	89	29	14	21	33	1.94
38479726--38479780	22	2.5	22	72	0	56	52	1	5	40	1.35
38481204--38481241	18	2.2	18	86	9	53	65	5	7	21	1.38
38489849--38489887	20	1.9	21	84	5	53	71	2	2	23	1.10
38489871--38489953	19	4.5	19	76	13	68	63	1	3	31	1.19
38489797--38489910	61	1.9	58	81	12	133	63	3	2	30	1.25
38490260--38490301	19	2.2	19	83	8	50	19	7	2	71	1.20
38491128--38491166	20	2.0	20	89	0	60	46	0	0	53	1.00
38492822--38492848	5	5.4	5	100	0	54	0	18	0	81	0.69
38500636--38500843	80	2.6	80	93	0	346	26	28	21	23	1.99
38500636--38500846	40	5.3	40	79	5	230	27	27	21	23	1.99
38508632--38508838	79	2.6	79	93	1	335	27	28	21	23	1.99
38508632--38508841	40	5.3	40	79	6	230	27	28	20	23	1.99
38511478--38511506	9	3.3	9	95	4	51	48	6	0	44	1.29
38514951--38515075	45	2.8	45	81	6	155	44	15	18	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38522323--38522362	21	2.0	21	85	5	55	22	27	37	12	1.90
38523544--38523671	46	2.7	46	82	7	150	21	30	18	28	1.97
38523499--38523715	94	2.3	94	80	6	224	23	29	17	29	1.97
38523544--38523712	46	3.6	47	73	15	136	23	28	18	28	1.98
38533189--38533541	46	7.4	49	72	11	193	24	29	18	27	1.98
38533189--38533314	47	2.6	47	87	5	173	26	29	19	24	1.98
38538248--38538295	19	2.6	18	77	6	51	45	0	6	47	1.27
38541555--38541634	23	3.5	22	80	8	88	35	15	17	32	1.91
38541538--38541646	46	2.4	45	84	1	146	35	17	14	32	1.90
38543492--38543568	19	4.0	21	75	16	69	50	0	3	45	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290