genome.fa.s7.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  162  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52300025--52300143	45	2.7	45	89	1	186	28	16	26	28	1.97
52300298--52300463	27	6.1	27	78	0	143	43	15	13	27	1.84
52300300--52300460	54	3.0	54	82	0	178	44	15	11	27	1.81
52300293--52300464	81	2.1	81	81	1	211	43	16	13	26	1.85
52300828--52300863	18	2.0	18	100	0	72	33	22	27	16	1.95
52305951--52306014	31	2.1	31	87	0	92	23	20	15	40	1.90
52306222--52306329	25	4.4	25	86	5	132	28	22	21	27	1.99
52306377--52306424	20	2.4	20	86	6	62	37	20	8	33	1.83
52313356--52313529	40	4.3	40	90	1	226	25	25	22	25	2.00
52321439--52321646	38	5.4	38	82	12	191	25	28	23	22	1.99
52321475--52321646	75	2.2	77	86	7	242	24	29	23	22	1.99
52325879--52326225	47	7.4	47	93	0	552	28	29	9	32	1.88
52330139--52330183	20	2.2	20	88	0	63	35	13	2	48	1.54
52333406--52333457	13	4.1	13	83	11	72	32	7	23	36	1.83
52334774--52334825	13	4.1	13	83	11	72	32	7	23	36	1.83
52336142--52336193	13	4.1	13	83	11	72	32	7	23	36	1.83
52343087--52343124	14	3.1	12	85	14	51	73	0	10	15	1.09
52343092--52343124	7	5.0	7	89	10	52	72	0	12	15	1.12
52349077--52349252	47	3.8	47	74	13	173	30	30	18	20	1.96
52349070--52349246	93	1.9	93	92	0	300	31	29	18	20	1.96
52352096--52352150	17	3.1	17	81	7	56	76	3	16	3	1.07
52360448--52360508	26	2.3	26	82	0	68	24	19	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52360468--52360526	26	2.4	24	80	11	66	22	20	13	44	1.86
52374255--52374408	68	2.3	68	100	0	308	24	29	14	31	1.95
52383509--52383561	26	2.0	26	85	0	70	39	15	15	30	1.87
52385430--52385505	38	2.0	38	100	0	152	44	10	13	31	1.77
52391724--52391838	43	2.7	43	83	2	133	24	14	25	35	1.94
52392834--52392900	34	2.0	34	85	5	91	28	19	22	29	1.98
52400580--52400657	34	2.3	34	84	4	95	29	21	23	25	1.99
52404013--52404188	46	3.7	45	77	14	174	30	28	19	21	1.97
52406616--52406675	27	2.3	26	82	2	66	21	21	20	36	1.95
52416875--52416998	62	2.0	62	98	0	239	36	19	16	27	1.93
52421583--52421643	30	2.0	30	83	0	77	31	24	8	36	1.85
52423894--52424031	43	3.2	44	74	10	124	28	23	18	28	1.98
52428724--52428749	13	2.0	13	100	0	52	61	7	7	23	1.49
52434503--52434648	25	5.9	24	75	7	105	29	10	22	37	1.87
52434503--52434660	50	3.2	49	85	3	199	28	10	22	38	1.87
52434523--52434662	25	5.6	25	77	5	149	30	9	22	37	1.86
52434523--52434662	75	1.9	75	86	0	199	30	9	22	37	1.86
52436313--52436485	46	3.7	46	77	13	201	22	21	27	28	1.99
52436310--52436480	93	1.8	93	94	0	306	22	21	28	28	1.99
52442731--52442899	46	3.7	46	73	13	175	23	20	26	29	1.99
52442724--52442894	93	1.8	93	93	0	297	23	21	26	28	1.99
52446539--52446581	22	2.0	22	85	0	59	46	30	0	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52447227--52447376	43	3.5	43	83	1	176	33	24	14	28	1.94
52468581--52468610	15	2.0	15	93	0	51	50	33	13	3	1.58
52475718--52475764	15	3.5	15	67	27	50	44	14	4	36	1.65
52475712--52475770	25	2.4	25	100	0	118	45	15	3	35	1.63
52479421--52479581	79	2.0	79	98	0	313	54	12	16	16	1.71
52490318--52490500	79	2.3	80	83	7	221	24	27	22	24	2.00
52490316--52490500	40	4.7	40	82	7	225	24	28	22	24	2.00
52492608--52492829	40	5.7	40	85	7	269	24	27	22	25	2.00
52492608--52492829	79	2.8	78	82	10	222	24	27	22	25	2.00
52500638--52500862	40	5.7	40	84	6	269	26	28	21	24	1.99
52507557--52507758	53	3.7	54	77	2	190	19	24	19	36	1.95
52511890--52511950	30	2.0	30	87	0	86	13	27	36	22	1.92
52513605--52513723	49	2.5	48	84	6	143	26	26	19	27	1.99
52516257--52516456	40	5.0	40	83	3	235	27	28	22	23	1.99
52519279--52519407	42	3.0	42	84	2	168	30	27	13	29	1.94
52533841--52533955	57	2.0	57	96	0	212	32	5	16	46	1.69
52537733--52537780	21	2.4	21	86	6	64	56	4	2	37	1.30
52539472--52539520	18	2.7	17	81	9	53	26	38	22	12	1.89
52558877--52558965	33	2.6	33	89	7	135	21	28	25	24	1.99
52559368--52559435	30	2.3	30	97	0	127	19	30	27	22	1.97
52573812--52573975	43	3.9	42	81	8	181	28	15	25	31	1.95
52575464--52575553	29	3.1	29	83	1	101	30	25	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52578764--52578880	42	2.8	42	80	7	123	27	26	17	28	1.98
52584615--52584672	30	1.9	30	86	6	82	25	25	6	41	1.80
52590447--52590488	21	2.0	21	85	0	57	21	16	42	19	1.89
52594355--52594452	49	2.0	50	92	6	164	28	6	11	54	1.60
52597680--52597726	18	2.6	18	82	0	58	78	2	12	6	1.02
52597712--52597741	5	5.8	5	96	4	51	83	0	0	16	0.65
52606921--52606953	16	2.1	16	94	0	57	27	18	33	21	1.96
52612558--52612721	46	3.5	46	73	15	158	21	20	28	29	1.98
52612548--52612718	93	1.8	93	93	2	299	22	21	28	28	1.99
52616737--52616907	46	3.7	45	77	10	175	30	29	17	21	1.96
52619070--52619142	25	3.2	25	62	22	68	26	13	24	35	1.93
52619059--52619148	44	2.0	44	100	0	180	28	15	24	31	1.96
52620735--52620764	12	2.5	12	100	0	60	20	33	6	40	1.78
52628601--52628650	19	2.7	19	73	11	50	30	12	10	48	1.73
52632064--52632279	46	4.7	46	76	12	185	24	27	18	29	1.98
52632064--52632279	94	2.3	90	82	9	240	24	27	18	29	1.98
52638955--52639136	40	4.6	40	82	6	217	25	23	26	24	2.00
52638955--52639172	80	2.7	79	85	4	262	24	23	26	25	2.00
52643032--52643074	20	2.2	20	91	0	68	20	25	18	34	1.96
52643093--52643220	50	2.7	49	83	9	156	27	32	14	25	1.95
52645475--52645511	19	1.9	19	88	0	56	62	0	16	21	1.33
52646053--52646101	15	3.0	17	73	11	57	34	0	6	59	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52655000--52655119	26	4.5	27	76	7	111	59	0	7	32	1.31
52655000--52655122	52	2.3	55	83	4	162	59	1	7	31	1.34
52656490--52656519	15	1.9	16	93	6	53	16	6	0	76	0.99
52657274--52657358	44	1.9	44	80	4	100	23	25	18	31	1.97
52657498--52657582	44	1.9	44	85	0	116	30	28	15	25	1.96
52668657--52668780	26	4.6	27	72	5	99	61	2	6	29	1.34
52670145--52670172	14	2.0	14	100	0	56	21	0	0	78	0.75
52671591--52671762	93	1.8	93	96	0	317	27	29	21	20	1.98
52671584--52671759	46	3.8	46	79	12	216	28	29	21	20	1.98
52677249--52677290	17	2.3	19	84	15	54	59	4	2	33	1.31
52677369--52677401	10	3.3	10	88	12	50	63	0	0	36	0.95
52677888--52677959	35	2.1	35	97	0	135	41	6	16	34	1.75
52678044--52678087	19	2.4	20	82	14	51	56	4	0	38	1.20
52684213--52684388	56	3.1	56	99	0	343	44	9	23	22	1.81
52685834--52686478	47	13.6	47	89	5	840	32	9	30	27	1.88
52686293--52686317	9	2.8	9	100	0	50	36	0	32	32	1.58
52686199--52686411	103	2.1	103	99	0	417	33	10	29	26	1.89
52685834--52686466	150	4.5	139	86	6	853	32	9	30	27	1.88
52691218--52691343	46	2.7	46	97	0	234	28	30	21	19	1.98
52695338--52695530	96	2.0	97	90	1	307	35	14	18	31	1.91
52698424--52698605	43	4.3	42	71	9	136	37	17	19	25	1.93
52700564--52700599	17	2.1	18	94	5	65	11	22	47	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52702401--52702440	20	2.0	21	85	5	55	50	2	7	40	1.44
52702708--52702765	24	2.4	24	88	0	80	34	3	25	36	1.73
52704558--52704602	22	2.0	24	82	8	58	35	8	2	53	1.45
52704567--52704610	24	1.9	22	81	9	52	43	4	2	50	1.35
52705971--52706063	19	5.0	19	71	15	68	29	4	2	64	1.24
52706083--52706118	9	3.6	10	88	11	56	36	0	2	61	1.11
52707853--52707905	18	2.8	19	77	8	54	24	9	5	60	1.49
52711988--52712115	49	2.6	49	82	2	168	24	28	19	28	1.99
52711942--52712204	93	2.8	93	82	9	277	25	26	19	28	1.98
52712868--52712907	20	2.0	21	85	5	55	37	20	0	42	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290