genome.fa.s7.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  145  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46222385--46222429	16	2.8	15	83	10	54	15	4	4	75	1.12
46227921--46228002	26	3.2	26	63	30	68	31	28	14	25	1.95
46227865--46228061	50	3.9	50	85	1	261	27	25	18	27	1.98
46227880--46228061	101	1.8	99	90	2	292	28	25	18	26	1.98
46250271--46250303	13	2.3	15	90	10	52	69	6	0	24	1.10
46252176--46252208	13	2.6	13	90	4	50	39	0	12	48	1.40
46257498--46257527	14	2.1	15	93	6	53	20	3	0	76	0.92
46260732--46260780	17	2.8	17	84	12	55	67	4	4	24	1.26
46269464--46269795	48	6.9	47	77	4	270	24	29	18	28	1.98
46269464--46269779	96	3.3	96	80	1	330	23	29	18	28	1.98
46269481--46269792	144	2.2	144	85	3	414	23	29	18	28	1.98
46273957--46274028	29	2.5	29	84	8	94	34	25	22	18	1.96
46275452--46275498	24	2.0	24	91	0	76	23	38	2	36	1.67
46276810--46276907	47	2.1	47	98	0	187	31	10	13	44	1.77
46277686--46277903	45	4.9	45	87	3	302	23	22	27	26	2.00
46284339--46284436	47	2.1	47	100	0	196	30	10	14	44	1.78
46285215--46285422	45	4.6	45	92	0	319	22	21	26	29	1.99
46288865--46288893	12	2.3	13	94	5	51	20	6	6	65	1.40
46295999--46296043	22	2.0	22	83	8	56	37	4	2	55	1.32
46301946--46302038	28	3.4	28	81	1	107	33	19	25	21	1.97
46301931--46302038	55	2.0	55	83	3	137	34	16	25	24	1.95
46303122--46303154	17	1.9	17	100	0	66	69	0	24	6	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46308733--46309716	490	2.0	489	95	1	1774	38	6	18	37	1.76
46313519--46313608	28	3.2	28	86	7	130	32	23	26	17	1.97
46313519--46313608	27	3.3	27	86	7	119	32	23	26	17	1.97
46314699--46314731	17	1.9	17	100	0	66	69	0	24	6	1.10
46324887--46324997	27	4.1	27	82	7	129	36	20	22	20	1.96
46331441--46331588	68	2.2	64	82	7	163	26	29	16	28	1.97
46332254--46332314	30	2.0	30	83	0	77	29	22	9	37	1.87
46338157--46338262	42	2.5	43	80	4	117	27	16	25	30	1.97
46338161--46338270	43	2.6	42	75	7	105	27	17	25	30	1.97
46340491--46340535	20	2.2	20	88	0	63	48	2	13	35	1.54
46342828--46343139	47	6.6	47	91	2	464	29	29	8	33	1.86
46368057--46368158	51	2.0	51	94	0	177	34	14	13	37	1.86
46368303--46368447	72	2.0	72	95	0	263	34	8	25	31	1.86
46380171--46380278	53	2.0	53	96	0	198	24	13	15	46	1.82
46380158--46380306	47	3.0	47	85	11	208	27	12	15	44	1.83
46381110--46381284	45	4.0	45	86	5	207	24	21	28	26	1.99
46381174--46381312	45	3.2	43	84	9	115	25	20	28	24	1.99
46381811--46381843	16	1.9	18	88	11	52	24	15	12	48	1.78
46384148--46384255	25	4.4	25	91	3	166	31	21	20	26	1.98
46384303--46384349	20	2.3	20	92	7	78	34	19	10	36	1.86
46384385--46384432	25	1.9	25	86	0	69	27	14	22	35	1.93
46391642--46391680	19	2.1	19	100	0	78	20	20	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46393542--46393591	21	2.4	21	89	0	82	22	28	28	22	1.99
46394376--46394427	25	2.1	24	82	10	61	15	21	23	40	1.91
46401149--46401360	38	5.6	39	78	12	183	25	20	26	26	1.99
46401198--46401360	77	2.1	75	82	9	197	26	20	26	25	1.99
46408901--46409079	74	2.3	78	81	8	190	26	20	27	25	1.99
46408915--46409079	38	4.3	38	84	7	185	25	20	28	25	1.99
46410797--46410928	46	2.9	46	87	2	185	30	26	22	20	1.98
46413176--46413334	27	5.9	27	91	2	230	30	24	6	38	1.80
46413333--46413516	27	6.8	27	83	4	212	41	20	8	30	1.81
46413528--46413579	27	1.9	27	88	7	79	42	13	11	32	1.80
46414375--46414450	20	3.9	20	86	8	104	36	7	21	34	1.82
46414500--46414622	52	2.4	51	89	5	187	26	21	21	30	1.98
46414500--46414622	26	4.8	26	82	5	144	26	21	21	30	1.98
46414766--46414857	42	2.2	42	92	0	148	26	13	21	39	1.90
46414881--46414959	31	2.5	31	97	0	149	27	18	25	27	1.98
46419767--46419808	17	2.4	18	84	11	52	23	0	33	42	1.55
46424208--46424249	18	2.4	17	84	7	57	11	7	4	76	1.15
46424211--46424274	24	2.7	23	77	20	60	9	9	4	76	1.14
46424240--46424285	18	2.6	16	83	16	56	4	15	6	73	1.19
46424910--46425154	103	2.4	102	84	6	296	24	22	30	23	1.99
46437597--46437681	44	1.9	44	80	4	100	38	14	23	23	1.91
46437815--46437933	44	2.6	47	90	8	199	36	13	24	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46437912--46438129	54	4.0	54	80	4	233	36	16	25	21	1.94
46437920--46438133	108	2.0	108	87	1	313	35	16	26	21	1.94
46438222--46438254	16	2.0	17	94	5	59	36	3	24	36	1.71
46440995--46441102	36	2.7	39	83	13	141	18	29	23	28	1.98
46441023--46441102	36	2.2	36	97	0	151	20	28	21	30	1.98
46441577--46441738	38	4.2	38	83	4	200	29	24	24	22	1.99
46443736--46443922	40	4.7	40	88	4	121	26	27	21	24	2.00
46443779--46444002	40	5.6	40	83	7	233	28	27	20	23	1.99
46443742--46444002	80	3.3	80	81	5	228	27	27	21	24	1.99
46443782--46444002	120	1.8	120	83	9	299	27	27	21	23	1.99
46451676--46451862	40	4.7	40	88	4	121	26	27	21	24	2.00
46451719--46451942	40	5.6	40	83	7	233	28	27	20	23	1.99
46451682--46451942	80	3.3	80	81	5	228	27	27	21	24	1.99
46451722--46451942	120	1.8	120	83	9	299	27	27	21	23	1.99
46458454--46458565	43	2.6	43	95	0	197	30	32	25	11	1.91
46458558--46458759	38	5.3	38	82	2	233	31	25	20	22	1.98
46458563--46458761	78	2.6	77	75	7	215	32	24	20	22	1.98
46463306--46463337	17	1.9	16	93	6	55	40	12	15	31	1.85
46469199--46469239	19	2.1	20	86	4	57	51	7	12	29	1.66
46472980--46473009	11	2.9	10	90	9	51	10	6	10	73	1.25
46483826--46483941	40	2.9	40	88	3	153	30	19	20	29	1.97
46483678--46484035	196	1.8	196	83	3	479	29	19	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46484381--46484525	22	6.6	22	68	13	84	24	0	29	46	1.53
46484381--46484529	7	20.6	7	72	9	84	24	0	28	46	1.52
46484382--46484443	29	2.1	29	82	11	74	27	0	27	45	1.54
46484381--46484565	15	12.8	14	71	10	70	24	0	30	44	1.58
46484424--46484538	29	4.0	28	72	13	90	23	0	30	46	1.53
46484469--46484584	36	3.2	36	77	13	105	22	1	37	38	1.65
46488672--46488738	9	7.4	9	82	0	71	44	26	1	26	1.63
46488672--46488738	27	2.5	27	90	0	98	44	26	1	26	1.63
46494233--46494272	21	1.9	21	90	10	64	45	17	22	15	1.85
46494692--46494889	43	4.6	44	76	8	149	26	22	19	31	1.98
46495352--46495412	30	2.0	30	100	0	122	47	13	3	36	1.59
46498437--46498488	25	2.1	25	85	3	70	30	17	19	32	1.95
46498444--46498513	25	2.8	25	86	0	86	27	20	24	28	1.99
46498724--46498928	27	7.6	27	87	0	275	23	22	20	33	1.97
46498976--46499169	81	2.4	81	87	0	280	31	8	22	38	1.83
46498976--46499196	27	8.2	27	85	0	244	32	7	22	37	1.82
46498976--46499358	54	7.1	54	86	1	219	36	8	21	33	1.84
46499120--46499450	81	4.1	81	87	0	455	39	8	21	30	1.82
46499146--46499458	27	11.6	27	86	0	392	40	8	20	30	1.82
46499463--46499614	27	5.7	26	71	9	99	30	9	18	41	1.83
46499446--46499620	80	2.2	81	87	2	244	31	9	18	40	1.83
46502005--46502072	24	2.8	25	88	6	104	23	25	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46502275--46502459	27	6.9	26	80	7	165	26	18	18	36	1.94
46502274--46502460	54	3.5	54	85	2	243	26	18	19	35	1.95
46502287--46502464	81	2.2	80	85	5	234	26	17	20	35	1.95
46502488--46502656	81	2.1	81	92	0	275	34	8	17	39	1.81
46502449--46502656	27	7.8	27	84	1	231	32	9	18	38	1.83
46502649--46502963	27	11.7	27	86	1	393	40	6	20	32	1.78
46502515--46502684	81	2.1	81	85	0	223	35	8	18	38	1.80
46502977--46503114	27	5.1	27	76	5	145	30	10	20	39	1.85
46502965--46503120	80	1.9	82	88	2	235	32	10	19	38	1.85
46502977--46503114	54	2.6	53	78	7	163	30	10	20	39	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290