genome.fa.s7.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  174  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56622954--56623008	28	2.0	28	82	10	69	23	18	25	32	1.97
56627711--56627763	26	2.0	26	100	0	106	39	15	3	41	1.65
56628685--56628765	27	3.0	26	82	5	81	35	22	24	17	1.95
56628789--56629024	97	2.4	98	89	0	339	35	27	17	19	1.94
56629075--56629157	27	3.1	26	82	5	94	38	21	20	19	1.93
56629345--56629433	27	3.3	27	71	6	90	41	21	19	17	1.90
56629338--56629455	54	2.2	54	95	0	209	38	23	18	18	1.93
56629358--56629442	27	3.1	27	66	12	66	40	18	17	23	1.92
56629435--56629738	27	11.3	27	87	0	374	25	19	19	36	1.95
56629722--56629901	27	6.7	27	72	9	145	32	10	18	38	1.84
56629436--56629819	54	7.1	53	82	5	285	27	17	18	36	1.93
56650746--56650873	39	3.3	39	85	0	175	21	27	20	30	1.98
56660052--56660302	80	3.2	80	93	0	405	23	20	28	27	1.99
56660051--56660302	40	6.3	40	80	2	292	23	20	28	27	1.99
56662053--56662182	39	3.3	39	90	2	197	21	26	20	30	1.98
56665125--56665179	21	2.7	20	82	2	65	21	21	16	40	1.91
56671478--56671832	47	7.5	47	94	1	602	32	8	29	29	1.87
56674218--56674292	38	2.0	38	86	5	107	30	18	26	24	1.98
56674346--56674586	40	6.1	40	87	0	331	24	20	29	26	1.99
56674346--56674586	80	3.0	80	92	0	376	24	20	29	26	1.99
56677179--56677627	47	9.5	47	95	0	781	32	8	29	29	1.86
56686148--56686357	42	4.7	42	76	10	145	29	27	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56686110--56686357	48	5.5	42	76	12	167	29	27	16	27	1.97
56693286--56693537	131	1.9	131	90	0	405	28	18	19	34	1.95
56693284--56693639	131	2.7	131	80	2	347	29	17	18	33	1.95
56705487--56705849	133	2.7	133	84	1	478	26	18	25	28	1.98
56711162--56711322	58	2.8	58	77	3	162	30	21	18	29	1.97
56717496--56717558	21	3.0	21	85	2	81	31	33	4	30	1.78
56722304--56722366	21	3.0	21	85	2	81	31	33	4	30	1.78
56731501--56731592	28	3.3	28	90	0	139	21	15	36	26	1.93
56731902--56732472	188	3.0	185	83	4	700	39	18	9	32	1.82
56731902--56732511	27	22.7	27	81	5	506	39	19	9	32	1.83
56732476--56732554	27	2.9	27	82	0	86	36	20	16	26	1.93
56735379--56735452	28	2.6	28	93	0	130	20	14	35	29	1.93
56735379--56735487	56	1.9	57	83	1	139	22	17	33	25	1.96
56735787--56736134	27	13.0	27	79	4	321	40	19	9	30	1.83
56735786--56736134	80	4.4	82	77	6	329	40	19	9	30	1.84
56735787--56736134	53	6.5	54	80	4	321	40	19	9	30	1.83
56739310--56739480	41	4.2	41	84	7	188	20	19	22	37	1.94
56739303--56739480	82	2.2	82	81	9	220	20	19	22	37	1.94
56744859--56744974	57	2.0	57	86	3	162	31	29	12	25	1.93
56744859--56744974	28	4.1	29	87	5	148	31	29	12	25	1.93
56744872--56744972	29	3.6	29	90	2	152	30	29	13	25	1.94
56747446--56747545	24	4.2	24	89	0	137	34	2	40	24	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56748955--56749064	27	4.1	27	84	1	123	18	22	20	39	1.93
56753529--56753559	16	1.9	16	93	0	53	48	16	0	35	1.46
56758026--56758126	24	4.2	24	92	0	157	33	2	41	21	1.68
56759534--56759641	27	4.1	26	82	7	119	15	23	20	40	1.90
56761017--56761050	18	1.9	18	88	5	52	29	14	14	41	1.86
56762280--56762363	28	3.0	29	89	3	118	28	30	13	27	1.94
56763292--56763324	12	2.7	13	90	9	52	75	0	0	24	0.80
56763295--56763327	13	2.5	14	85	14	52	75	0	0	24	0.80
56765599--56765768	39	4.3	40	87	4	206	27	28	20	23	1.99
56765626--56765812	79	2.4	78	81	9	209	26	28	20	24	1.99
56774221--56774254	14	2.5	13	81	9	50	67	11	2	17	1.34
56777228--56777288	30	2.1	30	90	3	97	37	24	14	22	1.92
56784953--56785128	50	3.5	49	85	3	217	30	26	18	25	1.98
56787710--56787816	27	4.0	27	79	13	112	34	18	21	25	1.96
56788172--56788219	20	2.4	20	78	0	60	12	18	31	37	1.88
56788431--56788504	6	12.0	6	75	16	71	20	18	14	45	1.85
56788453--56788528	31	2.5	31	93	0	125	19	19	14	46	1.84
56788431--56788498	25	2.7	25	88	0	100	20	19	14	45	1.85
56796965--56797101	46	3.0	46	89	0	202	25	31	8	34	1.86
56797075--56797222	47	3.1	47	82	7	179	28	28	9	33	1.88
56797075--56797222	51	3.1	49	84	7	180	28	28	9	33	1.88
56797785--56797933	73	2.0	73	98	0	289	36	11	13	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56804635--56804666	12	2.7	12	100	0	64	34	28	31	6	1.82
56811380--56811514	49	2.7	50	87	6	195	26	20	30	22	1.98
56814229--56814345	46	2.6	44	79	9	119	28	19	27	24	1.99
56815477--56815542	28	2.4	28	94	0	114	15	19	46	18	1.83
56818531--56818568	19	2.0	20	85	15	53	39	23	0	36	1.55
56818798--56818964	46	3.6	45	78	13	180	28	28	20	22	1.99
56818799--56818968	92	1.8	93	92	1	288	28	28	21	21	1.99
56825645--56825682	19	2.0	20	85	15	53	39	23	0	36	1.55
56825906--56826033	46	2.8	46	78	9	145	29	28	19	22	1.98
56825909--56826052	46	3.1	45	70	18	118	29	28	19	22	1.98
56829817--56829887	33	2.1	34	82	7	83	29	25	22	22	1.99
56830076--56830128	27	2.0	27	88	0	79	32	22	24	20	1.98
56830311--56830404	27	3.5	27	91	0	143	24	17	24	34	1.96
56831132--56831169	17	2.2	17	100	0	76	34	10	21	34	1.87
56833837--56833991	46	3.3	47	78	9	140	25	20	30	24	1.98
56833865--56833991	46	2.7	48	79	6	143	25	18	31	24	1.98
56833975--56834001	11	2.5	11	100	0	54	22	18	33	25	1.97
56838952--56839017	30	2.2	30	94	0	114	22	24	31	21	1.98
56841604--56841632	14	2.1	14	100	0	58	48	6	0	44	1.29
56842075--56842148	29	2.6	29	89	4	105	25	16	32	25	1.96
56850289--56850367	28	2.8	29	84	5	99	25	15	31	27	1.95
56850289--56850361	29	2.6	29	86	6	96	26	16	31	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56853778--56853821	14	3.1	14	83	0	52	61	11	11	15	1.57
56854987--56855049	22	2.8	22	85	2	81	53	1	0	44	1.10
56855123--56855202	40	2.0	40	100	0	160	45	15	7	32	1.74
56864888--56865572	56	12.3	55	80	6	770	29	20	16	33	1.94
56870770--56870814	16	2.9	16	77	16	58	51	0	0	48	1.00
56878052--56878228	79	2.2	79	86	6	243	20	23	29	25	1.99
56878052--56878228	39	4.5	40	88	5	245	20	23	29	25	1.99
56878052--56878253	40	5.1	40	86	5	189	21	22	29	26	1.99
56878091--56878267	79	2.3	79	81	6	200	22	22	28	26	1.99
56881157--56881275	44	2.8	43	82	11	138	27	26	18	27	1.98
56892142--56892203	28	2.2	28	91	0	97	32	27	8	32	1.86
56892311--56892365	28	2.0	28	92	0	92	21	27	21	29	1.99
56892311--56892384	28	2.6	28	84	2	76	21	25	21	31	1.98
56893456--56893489	10	3.3	10	84	8	50	29	8	8	52	1.62
56899962--56900025	27	2.3	28	86	5	94	32	26	7	32	1.85
56900131--56900218	26	3.2	28	87	9	128	18	27	22	31	1.97
56900131--56900243	26	4.1	28	83	8	119	17	26	21	34	1.95
56900131--56900243	55	2.1	54	85	5	147	17	26	21	34	1.95
56900672--56900712	18	2.3	18	86	0	55	24	2	4	68	1.22
56904630--56904876	40	6.2	40	80	12	253	23	23	27	25	2.00
56904629--56904853	80	2.8	79	86	4	301	23	23	27	25	2.00
56904630--56904856	119	1.9	120	86	2	314	23	23	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56904630--56904876	79	3.1	79	84	5	295	23	23	27	25	2.00
56910050--56910233	40	4.6	41	83	11	206	24	22	27	25	2.00
56910050--56910233	79	2.3	80	84	6	223	24	22	27	25	2.00
56910103--56910266	79	2.1	78	84	5	206	26	20	27	25	1.99
56910063--56910266	39	5.2	40	78	10	163	26	21	26	25	1.99
56917973--56918158	79	2.3	82	83	8	231	24	22	27	25	2.00
56917973--56918158	40	4.7	40	84	7	227	24	22	27	25	2.00
56918027--56918191	79	2.1	79	84	6	210	26	21	27	25	1.99
56924155--56924309	39	4.0	38	87	2	202	16	20	30	32	1.95
56941254--56941435	28	6.5	28	92	1	276	33	26	12	28	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290