genome.fa.s7.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  192  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61567631--61567669	21	1.9	21	94	5	71	20	30	38	10	1.86
61568704--61568909	48	4.4	45	73	11	137	21	29	19	29	1.98
61573045--61573090	23	2.0	23	84	12	60	45	10	6	36	1.65
61573052--61573096	23	2.0	23	82	8	56	40	13	8	37	1.76
61574577--61574618	20	2.1	20	95	0	75	30	21	9	38	1.85
61580311--61580356	23	2.0	23	84	12	60	45	10	6	36	1.65
61581947--61581985	20	2.0	20	100	0	78	30	23	10	35	1.88
61587453--61587504	26	2.0	27	96	3	97	34	17	13	34	1.89
61597694--61597748	27	2.0	27	96	0	101	27	14	23	34	1.94
61608727--61608784	27	2.1	27	87	6	82	43	15	13	27	1.85
61612475--61612506	8	3.9	8	95	4	55	0	37	50	12	1.41
61613078--61613186	27	4.2	25	76	17	96	37	18	12	31	1.88
61613086--61613186	52	2.0	51	86	5	141	39	16	12	30	1.87
61613142--61613199	27	2.1	27	90	0	89	43	13	13	29	1.83
61616163--61616206	22	2.0	22	100	0	88	18	22	18	40	1.91
61632843--61633035	40	4.8	40	80	2	226	25	21	26	26	1.99
61632847--61633035	80	2.4	80	90	0	297	24	21	27	25	1.99
61646838--61646951	43	2.7	42	87	5	167	28	16	24	29	1.97
61661072--61661219	41	3.6	41	77	7	147	29	29	20	21	1.98
61664638--61664861	79	2.8	79	81	11	226	25	22	27	24	2.00
61664639--61664861	40	5.6	40	85	8	235	26	22	27	24	2.00
61664691--61664894	79	2.6	77	81	9	225	27	21	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61671943--61672112	79	2.2	78	85	7	220	25	21	27	24	1.99
61671891--61672112	40	5.6	40	83	9	235	25	22	27	24	2.00
61671943--61672145	79	2.6	79	82	7	202	27	21	27	24	1.99
61679068--61679237	41	4.2	40	73	18	152	27	28	21	22	1.99
61679070--61679215	41	3.5	41	79	9	154	26	29	21	21	1.99
61691247--61691305	14	4.2	14	88	0	91	37	5	16	40	1.71
61691387--61691460	38	2.0	38	82	10	91	39	4	2	54	1.34
61693083--61693146	18	3.6	18	80	14	78	56	21	4	17	1.59
61693828--61693921	48	2.0	47	93	2	161	54	18	20	7	1.67
61698807--61699023	30	7.4	30	82	9	268	47	13	17	21	1.82
61698807--61698998	6	31.8	6	76	15	175	47	14	17	20	1.81
61699157--61699255	27	3.7	26	81	5	99	37	19	22	21	1.94
61699350--61699411	22	2.8	23	82	7	74	33	19	22	24	1.97
61699869--61700106	27	8.8	27	85	3	282	25	20	19	34	1.96
61699842--61700161	54	6.1	53	80	11	338	25	20	19	34	1.96
61699869--61700161	81	3.7	81	85	6	356	25	19	19	34	1.96
61700065--61700150	44	2.0	44	92	0	145	27	20	19	31	1.97
61700109--61700161	27	2.0	27	92	0	88	24	18	20	35	1.95
61700146--61700459	27	11.6	27	83	2	281	31	7	21	39	1.82
61700144--61700459	81	3.9	81	82	2	312	31	7	21	39	1.82
61709189--61709297	49	2.3	47	93	4	182	32	7	30	30	1.85
61711324--61711426	43	2.4	43	100	0	206	22	15	35	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61711408--61711481	29	2.6	29	89	4	105	25	16	32	25	1.96
61711794--61712133	40	8.5	40	85	3	366	24	21	28	25	1.99
61714813--61714870	24	2.5	23	81	16	66	62	0	5	32	1.18
61715140--61715248	49	2.3	47	93	4	182	32	7	30	30	1.85
61717271--61717373	43	2.4	43	100	0	206	22	15	35	26	1.94
61717355--61717428	29	2.6	29	89	4	105	25	16	32	25	1.96
61717815--61718084	118	2.3	120	86	1	373	24	21	27	25	1.99
61717737--61718074	40	8.5	40	86	3	375	24	21	28	25	1.99
61721071--61721179	49	2.3	47	93	4	182	32	7	30	30	1.85
61725084--61725230	40	3.7	40	97	0	267	19	19	29	32	1.96
61732774--61732880	40	2.7	40	94	0	178	21	20	27	30	1.98
61734201--61734311	43	2.6	42	84	7	152	27	25	18	29	1.98
61734190--61734311	42	2.9	42	84	4	156	27	24	18	30	1.98
61739965--61740155	28	6.6	28	78	8	204	30	28	13	26	1.94
61740022--61740086	34	1.9	34	100	0	130	27	35	13	23	1.93
61739965--61740138	90	1.9	90	87	2	251	29	28	13	27	1.94
61741705--61741770	28	2.4	28	89	5	98	22	15	33	28	1.94
61742085--61742425	27	12.7	27	81	3	330	39	18	9	33	1.82
61742085--61742478	27	14.6	27	79	4	323	38	18	9	32	1.84
61745111--61745787	47	14.3	47	92	0	1039	32	8	30	28	1.87
61745449--61745571	22	5.3	22	62	18	61	31	10	31	26	1.90
61758338--61758522	79	2.3	82	84	7	238	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61758319--61758522	40	5.1	40	82	8	238	25	27	22	25	2.00
61763617--61763664	24	2.0	24	100	0	96	29	29	4	37	1.76
61768261--61768304	19	2.4	18	85	7	54	40	9	0	50	1.34
61770402--61770555	28	5.5	28	90	0	227	28	28	14	28	1.95
61774642--61774795	42	3.5	41	74	13	137	24	18	29	27	1.98
61793969--61794192	79	2.8	79	85	6	292	25	27	22	24	2.00
61793969--61794192	40	5.7	40	86	6	280	25	27	22	24	2.00
61800905--61801129	40	5.7	40	84	5	260	26	28	21	24	1.99
61800907--61801129	119	1.9	120	83	6	292	26	27	21	24	1.99
61804815--61804965	40	3.7	39	87	6	187	31	23	21	23	1.99
61804839--61804965	42	3.1	42	90	4	213	32	23	20	23	1.98
61806281--61806307	6	4.5	6	100	0	54	14	0	0	85	0.61
61817050--61817078	13	2.2	13	100	0	58	31	0	13	55	1.39
61822540--61822578	6	6.5	6	90	0	60	17	2	0	79	0.84
61822532--61822585	18	3.2	18	87	7	69	18	3	0	77	0.91
61824235--61824452	40	5.5	40	91	3	325	25	27	22	24	2.00
61827964--61828070	27	3.9	27	79	9	110	37	21	22	18	1.94
61827961--61828070	54	2.0	54	82	3	132	38	20	22	18	1.94
61831651--61831679	13	2.2	13	100	0	58	31	0	13	55	1.39
61853474--61853656	79	2.3	81	83	7	223	25	22	27	24	2.00
61853474--61853656	40	4.6	40	82	9	205	25	22	27	24	2.00
61853525--61853689	79	2.1	79	83	6	201	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61861413--61861595	40	4.7	40	81	8	214	25	21	27	25	1.99
61870337--61870512	46	3.8	46	76	12	198	19	21	30	28	1.97
61870334--61870505	93	1.8	93	94	0	308	19	21	30	27	1.98
61881260--61881382	25	5.2	25	64	25	86	34	12	26	26	1.91
61881273--61881395	22	5.3	22	66	24	74	33	12	28	26	1.92
61881252--61881398	47	3.1	47	99	0	285	34	11	27	25	1.91
61881252--61881438	94	2.0	94	87	4	270	33	11	29	25	1.91
61881422--61881548	46	2.8	46	85	0	164	35	10	29	24	1.88
61883035--61883173	40	3.5	40	95	0	251	24	21	27	26	1.99
61883153--61883194	21	2.0	21	95	0	75	23	21	23	30	1.99
61883113--61883237	61	2.0	61	95	0	223	24	21	26	27	1.99
61883174--61883412	40	6.0	40	91	1	374	23	20	28	27	1.99
61883073--61883274	101	2.0	101	95	1	361	24	20	27	27	1.99
61883035--61883314	141	2.0	141	94	0	488	24	21	27	27	1.99
61887147--61887269	22	5.3	22	65	24	74	33	13	28	25	1.93
61887126--61887312	94	2.0	94	88	4	279	32	12	30	24	1.92
61887126--61887272	47	3.1	47	99	0	285	34	12	28	25	1.92
61887296--61887422	46	2.8	46	88	0	182	34	10	32	22	1.88
61889537--61889743	53	3.8	53	74	5	182	39	18	23	18	1.92
61903242--61903425	40	4.6	40	78	10	198	23	28	22	25	2.00
61903244--61903426	79	2.3	81	82	7	214	24	27	22	25	2.00
61908085--61908114	15	2.1	15	93	6	53	30	6	26	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61909990--61910131	43	3.3	43	85	3	169	27	20	27	24	1.99
61914562--61914591	15	2.1	15	93	6	53	30	6	26	36	1.82
61917199--61917338	59	2.4	59	81	11	162	27	27	19	26	1.99
61918532--61918561	15	2.0	15	93	0	51	73	0	16	10	1.09
61919987--61920151	43	3.9	43	82	7	158	28	21	26	23	1.99
61920086--61920178	41	2.2	43	83	7	111	32	20	26	20	1.97
61922983--61923152	27	6.4	26	76	5	110	29	15	18	36	1.92
61923094--61923167	27	2.7	27	80	0	67	32	12	18	36	1.88
61955887--61955990	35	3.0	35	91	0	163	20	13	31	34	1.91
61955898--61956010	35	3.2	35	83	7	140	20	12	30	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290