Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  102  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31555028--31555083
28
2.0
28
93
6
96
21
25
7
46
1.76
31562611--31562711
31
3.3
31
75
12
82
40
16
31
10
1.83
31564695--31564755
30
2.0
30
93
0
104
37
9
18
34
1.83
31566576--31566654
39
2.1
39
95
2
142
58
7
5
29
1.47
31566861--31566889
14
2.1
14
93
6
51
20
0
0
79
0.74
31572463--31572620
42
3.7
43
76
11
155
24
18
27
29
1.98
31575474--31575616
73
2.0
73
91
0
232
33
17
23
25
1.96
31578325--31578371
24
2.0
25
87
8
71
59
23
2
14
1.46
31578697--31578732
18
2.0
18
94
0
63
30
0
0
69
0.89
31578696--31578751
19
3.1
17
84
7
67
28
0
3
67
1.07
31579710--31579745
16
2.2
17
95
5
65
22
30
0
47
1.52
31579740--31579793
11
4.9
11
81
6
56
25
29
1
42
1.66
31579740--31579793
22
2.5
21
78
6
63
25
29
1
42
1.66
31579829--31579858
14
2.1
14
93
0
51
40
3
0
56
1.16
31580951--31580976
7
3.7
7
100
0
52
26
0
15
57
1.38
31581479--31581570
30
3.1
31
81
6
118
32
40
13
14
1.84
31582754--31582799
20
2.3
20
100
0
92
19
45
15
19
1.85
31585239--31585616
125
3.0
126
93
0
632
29
17
16
37
1.92
31585239--31585616
126
3.0
126
92
0
623
29
17
16
37
1.92
31585577--31585640
28
2.3
28
86
0
83
26
15
6
51
1.67
31587195--31587269
38
2.0
38
100
0
150
26
16
20
37
1.93
31588191--31588325
67
2.0
67
100
0
270
32
11
11
43
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31589177--31589222
2
23.0
2
95
0
83
52
47
0
0
1.00
31590193--31590224
5
6.4
5
100
0
64
0
0
37
62
0.95
31591570--31591648
39
2.0
39
97
0
149
34
5
10
50
1.58
31595248--31595613
43
8.6
43
78
3
344
31
27
16
24
1.96
31595250--31595613
85
4.3
85
79
5
340
32
27
15
24
1.96
31595248--31595613
128
2.9
128
79
3
344
31
27
16
24
1.96
31597634--31597674
20
2.0
20
95
0
73
41
7
9
41
1.66
31599482--31599537
24
2.3
23
88
8
85
0
44
1
53
1.11
31600281--31600310
6
5.0
6
100
0
60
16
0
0
83
0.65
31600846--31600880
15
2.3
15
85
0
52
31
2
2
62
1.24
31600960--31601008
21
2.5
20
83
9
64
42
34
6
16
1.73
31600985--31601024
13
3.0
13
81
3
53
40
40
2
17
1.63
31601403--31601557
7
22.0
7
76
1
130
50
28
0
21
1.49
31601909--31602119
40
5.3
40
82
5
257
25
20
22
31
1.98
31602693--31602810
57
2.1
57
82
7
141
43
6
19
30
1.77
31609934--31610118
40
4.6
40
83
7
207
24
22
27
25
2.00
31609986--31610141
80
2.0
79
82
6
190
26
19
26
27
1.99
31612090--31612261
93
1.8
93
92
0
290
29
29
20
20
1.98
31612083--31612258
46
3.8
46
76
12
180
30
29
19
20
1.97
31627827--31627857
7
4.4
7
95
0
53
41
25
3
29
1.71
31627980--31628070
45
2.0
45
93
0
155
36
24
14
25
1.93
31627999--31628074
21
3.5
21
66
16
55
36
25
14
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31631280--31631323
22
2.0
22
86
8
63
2
15
20
61
1.45
31632510--31632569
9
6.1
10
75
16
63
36
10
20
33
1.86
31632520--31632586
20
3.3
20
93
4
109
37
10
19
32
1.86
31632636--31632771
52
2.7
51
90
5
215
26
22
23
27
1.99
31632636--31632771
26
5.3
26
86
3
181
26
22
23
27
1.99
31640634--31640690
9
5.8
10
76
15
57
36
8
19
35
1.83
31640633--31640707
20
3.8
20
91
6
111
37
9
18
34
1.83
31640652--31640707
11
5.5
11
71
16
57
37
10
19
32
1.86
31640757--31640816
26
2.3
26
94
0
102
30
21
25
23
1.99
31640879--31641013
25
5.3
26
84
5
172
28
21
22
27
1.99
31640699--31640937
122
2.0
121
96
0
442
30
14
26
28
1.95
31640879--31641013
51
2.7
51
89
6
206
28
21
22
27
1.99
31654323--31654382
31
1.9
31
93
0
102
25
21
16
36
1.94
31654580--31654700
24
5.0
24
90
7
183
28
22
20
28
1.99
31654571--31654700
49
2.6
48
86
9
183
27
22
19
30
1.98
31654749--31654815
20
3.3
20
87
0
98
34
22
10
32
1.88
31659800--31659872
36
2.0
36
97
0
137
34
10
20
34
1.88
31662295--31662354
8
7.5
8
73
17
54
83
3
1
11
0.84
31662297--31662354
15
3.6
16
80
13
66
82
3
1
12
0.86
31662295--31662362
31
2.2
32
86
2
93
80
4
1
13
0.92
31662295--31662362
15
4.7
14
73
22
61
80
4
1
13
0.92
31662295--31662361
17
4.1
16
76
19
68
82
4
1
11
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31666201--31666256
17
2.8
22
66
25
59
44
17
3
33
1.66
31667960--31668040
22
3.7
22
81
0
99
14
25
16
43
1.86
31670018--31670072
26
2.2
25
83
9
67
27
14
20
38
1.91
31670028--31670079
26
2.0
26
100
0
104
26
19
15
38
1.91
31677047--31677147
29
3.5
29
81
5
123
32
28
12
25
1.93
31677358--31677400
16
2.7
16
81
0
50
11
23
13
51
1.74
31681718--31681755
19
2.0
19
85
10
51
18
10
0
71
1.14
31684156--31684237
31
2.7
31
83
3
105
29
21
17
31
1.96
31684449--31684501
25
2.2
25
89
3
81
30
16
16
35
1.92
31684548--31684598
21
2.4
21
83
0
66
33
19
11
35
1.88
31685646--31685687
22
1.9
22
95
0
75
54
0
33
11
1.37
31696470--31696593
29
4.3
29
84
4
155
29
29
15
26
1.96
31700205--31700320
27
4.3
27
82
4
108
31
13
15
39
1.86
31700219--31700403
27
6.9
27
80
6
189
31
10
17
39
1.85
31700219--31700409
54
3.5
54
86
2
251
31
10
18
38
1.86
31713621--31713675
21
2.8
19
81
10
65
70
5
1
21
1.16
31716316--31716346
14
2.3
14
94
5
55
64
0
6
29
1.18
31724297--31724329
16
2.1
16
100
0
66
45
18
18
18
1.86
31728738--31728790
27
1.9
27
84
3
70
41
13
11
33
1.80
31728747--31728845
27
3.7
27
83
5
103
40
18
11
30
1.85
31728747--31728853
54
2.0
54
81
7
128
38
19
11
30
1.87
31728831--31728892
27
2.3
27
82
0
70
35
27
8
29
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31728842--31728973
27
4.9
27
87
0
156
30
21
8
39
1.83
31728964--31729142
27
6.7
27
84
3
209
41
20
8
29
1.81
31728964--31729144
81
2.2
81
88
2
258
41
20
8
29
1.81
31728964--31729169
27
7.7
26
77
13
113
41
20
8
29
1.82
31729012--31729170
54
2.9
53
79
10
155
42
20
7
29
1.80
31729181--31729232
27
1.9
27
92
0
86
40
11
11
36
1.78
31729273--31729350
27
2.9
27
74
11
79
37
21
20
20
1.95
31730510--31730557
25
1.9
25
86
0
69
33
25
16
25
1.96
31730594--31730660
20
3.3
20
91
0
107
32
11
20
34
1.90
31730710--31730876
24
7.0
23
87
6
219
29
22
21
26
1.99
31730710--31730876
47
3.5
47
87
4
221
29
22
21
26
1.99
31730710--31730875
71
2.3
71
90
3
253
28
22
21
27
1.99
31731069--31731132
31
2.1
31
88
5
94
37
12
25
25
1.91
31739294--31739324
14
2.3
14
94
5
55
64
0
6
29
1.18
31739889--31739946
28
2.1
28
84
9
75
48
10
22
18
1.78
31741947--31742136
6
31.8
6
94
1
337
50
0
15
34
1.44
31743672--31743710
19
2.1
19
85
0
51
71
7
5
15
1.26
31744174--31744243
27
2.5
28
90
4
106
34
22
25
17
1.96
31744174--31744263
28
3.2
26
84
7
99
33
23
24
18
1.97
31744369--31744433
28
2.3
28
86
5
87
30
7
29
32
1.85
31746469--31746627
43
3.8
42
77
12
123
23
18
24
33
1.96
31760120--31760188
29
2.4
29
87
2
95
36
4
11
47
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31761109--31761133
13
1.9
13
100
0
50
32
4
24
40
1.73
31762234--31762353
44
2.8
43
76
10
138
25
16
27
30
1.97
31766152--31766708
47
11.9
47
92
2
915
33
8
29
29
1.86
31766347--31766425
25
3.3
25
61
10
65
35
3
26
34
1.75
31772527--31772590
32
2.0
32
100
0
128
50
0
21
28
1.49
31772846--31772870
13
1.9
13
100
0
50
32
4
24
40
1.73
31773929--31774048
44
2.8
43
77
13
138
29
17
24
29
1.97
31775564--31775736
46
3.7
46
79
10
199
22
20
27
29
1.99
31775561--31775731
93
1.8
93
92
0
288
22
21
28
28
1.99
31775961--31775998
19
2.0
20
85
15
53
36
0
23
39
1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290