genome.fa.s7.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  170  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55537772--55537916	39	3.7	40	75	12	120	38	16	30	14	1.89
55539436--55539609	45	3.8	45	78	6	188	29	29	18	21	1.97
55539444--55539614	93	1.8	92	91	1	279	29	30	19	21	1.97
55544925--55545094	46	3.7	46	77	10	202	30	29	18	21	1.97
55544933--55545104	93	1.8	93	93	0	299	28	29	19	22	1.98
55544930--55545119	46	4.1	44	68	21	104	29	28	19	22	1.98
55549889--55550042	27	5.7	27	86	3	193	28	20	9	41	1.84
55549868--55550070	81	2.5	81	81	0	244	32	20	8	39	1.82
55550030--55550189	27	6.0	27	82	3	153	40	21	8	30	1.82
55550028--55550189	81	2.0	81	84	1	209	40	20	8	29	1.83
55550035--55550174	54	2.6	54	86	2	183	42	20	7	30	1.80
55550177--55550420	27	9.0	27	88	0	326	36	18	20	24	1.95
55550623--55550692	25	2.8	25	88	0	104	27	24	22	25	2.00
55550622--55550717	25	3.9	24	78	9	86	28	22	22	26	1.99
55550913--55550987	31	2.4	31	93	0	123	30	20	24	25	1.98
55553295--55553450	27	5.8	27	83	3	188	31	19	7	41	1.78
55553299--55553448	81	1.9	81	85	2	212	32	18	7	42	1.78
55553295--55553450	54	2.9	54	85	3	215	31	19	7	41	1.78
55553427--55553512	27	3.2	27	85	3	93	43	24	4	27	1.74
55553289--55553476	54	3.5	54	80	5	182	33	19	6	39	1.79
55553274--55553475	81	2.5	81	78	2	208	34	19	6	39	1.78
55553441--55553567	27	4.8	27	76	5	116	41	21	8	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55553441--55553567	54	2.4	54	84	2	150	41	21	8	28	1.82
55553552--55553771	27	8.1	27	89	1	325	34	20	21	23	1.97
55553974--55554041	25	2.8	24	86	6	93	25	25	23	26	2.00
55554209--55554282	31	2.4	31	90	2	114	29	20	24	25	1.99
55560353--55560413	30	2.1	29	93	3	104	36	21	16	26	1.94
55565501--55565526	13	2.0	13	100	0	52	30	7	15	46	1.74
55566172--55566318	42	3.5	42	79	4	136	19	21	16	42	1.89
55569843--55570154	138	2.3	138	82	1	376	29	15	25	29	1.96
55572062--55572182	39	3.1	38	91	2	179	23	24	28	23	1.99
55575653--55575700	23	2.0	25	84	8	64	47	6	14	31	1.69
55579371--55579405	17	2.0	18	88	5	54	54	2	8	34	1.46
55580426--55580463	20	1.9	20	88	0	58	50	0	7	42	1.31
55581940--55581999	30	2.0	30	100	0	120	43	13	10	33	1.77
55583175--55583295	55	2.3	54	92	4	201	30	1	2	65	1.15
55584788--55584824	18	2.1	18	94	0	65	24	27	10	37	1.88
55588248--55588366	39	3.1	38	93	2	193	21	31	25	21	1.98
55599676--55599928	125	2.0	126	86	2	357	29	16	16	37	1.91
55599987--55600110	34	3.7	33	81	6	142	41	16	0	41	1.54
55600154--55600229	34	2.2	34	81	9	91	48	23	1	26	1.59
55602866--55602933	32	2.1	32	97	0	127	25	27	22	25	1.99
55608120--55608183	31	2.1	31	90	0	101	23	25	15	35	1.94
55608377--55608493	23	5.0	23	90	6	173	29	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55608544--55608610	20	3.3	20	93	0	116	32	20	11	34	1.90
55608544--55608599	11	5.5	11	71	16	57	32	19	12	35	1.89
55608647--55608694	25	1.9	25	82	0	60	25	14	25	35	1.94
55615715--55615775	32	1.9	32	93	0	104	26	29	19	24	1.99
55617879--55617954	31	2.5	31	80	4	91	25	28	15	30	1.96
55618173--55618242	25	2.8	26	86	6	99	25	21	24	28	1.99
55618373--55618420	25	1.9	25	86	0	69	29	16	22	31	1.96
55619969--55619993	13	1.9	13	100	0	50	32	16	16	36	1.90
55621373--55621631	47	5.5	47	89	1	374	32	8	29	28	1.87
55623649--55623751	43	2.4	43	98	0	197	22	16	35	25	1.94
55623734--55623806	29	2.5	29	88	4	103	26	16	32	24	1.96
55624121--55624273	40	3.8	39	75	11	123	26	22	26	24	2.00
55626331--55626355	13	1.9	13	100	0	50	32	16	16	36	1.90
55627735--55628040	47	6.5	47	91	1	459	32	8	30	29	1.87
55632427--55632464	20	1.9	20	88	0	58	47	0	26	26	1.52
55634528--55634709	40	4.6	40	89	3	262	29	24	21	24	1.99
55642902--55642976	34	2.2	33	81	11	89	28	25	21	25	1.99
55649968--55650038	24	3.0	23	83	8	81	39	4	42	14	1.65
55650182--55650223	22	2.0	22	85	4	59	0	14	14	71	1.15
55651144--55651181	19	2.0	19	85	10	51	15	15	42	26	1.87
55652600--55652645	21	2.2	21	92	3	76	43	13	19	23	1.86
55657481--55657537	29	2.0	29	100	0	114	19	3	31	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55659441--55659490	26	1.9	26	87	0	73	18	22	24	36	1.95
55659434--55659500	26	2.5	26	78	2	71	20	17	23	37	1.94
55661319--55661343	13	1.9	13	100	0	50	48	16	0	36	1.46
55664482--55664608	43	3.0	42	80	4	157	32	25	14	27	1.95
55666940--55667067	45	2.8	45	83	2	150	32	25	20	22	1.98
55670359--55670418	30	2.0	30	93	0	102	50	23	10	16	1.75
55681983--55682245	40	6.6	40	87	3	316	26	28	20	24	1.99
55689932--55690197	121	2.2	121	82	5	315	26	27	21	24	1.99
55689932--55690197	40	6.6	40	84	5	295	26	27	21	24	1.99
55689932--55690197	81	3.3	79	85	4	302	26	27	21	24	1.99
55701929--55702113	40	4.7	40	82	7	209	24	22	27	25	2.00
55701929--55702113	79	2.3	81	83	7	227	24	22	27	25	2.00
55701982--55702146	79	2.1	79	84	6	210	26	21	27	25	1.99
55706772--55706885	48	2.4	47	85	2	149	28	21	14	35	1.93
55708395--55708432	13	2.8	13	88	4	58	42	0	13	44	1.43
55710847--55710923	33	2.4	33	82	2	93	33	20	14	31	1.93
55712324--55712376	5	10.0	5	76	11	52	20	3	1	73	1.08
55712289--55712388	15	5.9	17	71	27	63	21	4	1	74	1.05
55712318--55712388	28	2.4	30	83	4	92	22	2	1	73	1.05
55713081--55713188	26	4.2	26	92	0	180	31	7	25	36	1.83
55714632--55714707	26	2.8	26	84	4	89	35	22	11	30	1.90
55714811--55714951	54	2.6	53	93	2	228	17	24	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55714811--55714969	27	5.9	27	82	11	184	18	24	22	34	1.96
55716557--55716740	96	1.9	97	87	3	273	28	15	24	32	1.95
55720443--55720561	43	2.8	41	78	7	121	30	24	13	31	1.93
55725423--55725474	25	2.1	24	82	3	59	53	0	1	44	1.11
55725604--55725629	13	2.0	13	100	0	52	61	15	0	23	1.33
55727686--55727724	16	2.5	16	83	4	53	76	2	5	15	1.06
55727701--55727780	35	2.2	37	78	8	94	63	5	13	17	1.46
55729611--55729777	90	1.9	90	94	0	298	41	10	16	30	1.83
55739602--55739747	49	2.9	50	78	5	179	30	24	17	26	1.97
55742919--55743041	48	2.6	49	83	5	135	27	17	25	30	1.97
55742921--55743212	131	2.2	136	81	6	328	27	17	25	29	1.97
55746079--55746160	42	2.0	42	85	0	110	26	15	23	34	1.95
55746113--55746207	50	1.9	50	88	0	145	32	14	15	36	1.89
55748714--55748764	24	2.1	24	100	0	102	41	13	17	27	1.87
55759301--55759402	35	3.1	35	65	21	103	32	10	22	34	1.89
55759283--55759406	62	2.0	62	100	0	248	32	11	22	33	1.90
55765956--55766180	49	4.5	49	85	2	279	25	17	27	29	1.97
55765949--55766188	99	2.4	100	83	2	286	25	18	27	29	1.98
55769186--55769222	15	2.5	15	95	0	65	5	13	24	56	1.58
55771375--55771599	49	4.5	49	86	2	270	24	16	28	30	1.96
55777675--55777729	27	2.0	27	96	0	101	41	7	5	45	1.55
55779016--55779057	20	2.0	22	86	9	61	52	11	30	4	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55784443--55784565	47	2.6	46	90	2	192	30	25	18	26	1.98
55784536--55784622	46	1.9	45	88	4	131	32	28	17	21	1.96
55791924--55792187	46	5.7	46	74	15	256	29	27	20	22	1.99
55791929--55792192	93	2.8	93	96	0	483	29	28	20	22	1.98
55791975--55792143	47	3.6	47	78	13	222	29	27	20	23	1.98
55794592--55794621	15	2.1	14	93	6	51	46	20	13	20	1.83
55795286--55795368	28	2.9	28	80	8	105	30	33	13	22	1.92
55804664--55804728	28	2.3	28	91	0	103	32	27	7	32	1.85
55804834--55804896	28	2.2	29	86	8	85	22	23	22	31	1.98
55804844--55804907	28	2.2	28	83	2	74	25	26	17	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290