genome.fa.s7.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  147  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46821071--46821353	27	10.4	27	81	6	169	36	7	22	33	1.82
46850851--46850973	42	2.9	43	75	2	124	31	13	21	33	1.92
46854130--46854310	48	3.8	48	87	0	236	23	19	25	30	1.98
46854167--46854336	48	3.8	42	74	14	117	25	18	24	30	1.98
46854263--46854353	42	2.2	42	84	4	112	25	17	26	30	1.97
46865698--46865820	43	2.9	42	81	11	151	31	22	17	28	1.96
46874316--46874353	13	2.9	13	88	0	58	21	36	18	23	1.95
46875453--46875493	16	2.7	15	85	10	57	41	7	0	51	1.30
46878411--46878472	24	2.5	25	82	10	83	24	29	17	29	1.97
46878326--46878603	25	11.2	24	75	7	166	17	28	19	34	1.95
46878411--46878614	25	8.3	25	78	7	184	22	28	18	31	1.97
46884112--46884152	22	1.9	21	95	5	73	19	4	0	75	0.98
46884432--46884531	13	7.8	13	73	13	66	29	4	2	65	1.22
46884576--46884714	15	9.3	15	67	16	58	33	4	2	58	1.32
46887624--46887705	29	2.9	27	82	14	87	56	1	1	41	1.15
46887653--46887728	39	1.9	39	89	0	116	55	2	3	38	1.33
46887624--46887728	10	10.9	9	72	13	68	56	1	2	39	1.25
46898115--46898286	43	4.0	44	78	6	172	33	23	13	29	1.93
46898127--46898286	86	1.9	87	83	1	214	33	23	13	30	1.93
46902603--46902685	42	2.0	42	85	0	112	25	20	26	27	1.99
46907947--46907993	14	3.2	14	84	6	58	27	0	0	72	0.85
46907965--46907991	7	3.9	7	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46910430--46910589	32	5.0	32	88	0	239	44	11	11	32	1.77
46910428--46910589	64	2.5	64	92	0	270	44	11	11	32	1.76
46915822--46915853	15	2.1	15	94	0	55	15	6	9	68	1.36
46917169--46917238	25	2.8	25	82	4	79	24	30	21	24	1.99
46920885--46921203	48	6.6	48	78	7	281	29	19	28	23	1.98
46925357--46925430	13	5.7	13	79	6	69	37	5	21	35	1.77
46925387--46925605	68	3.2	68	65	19	184	38	6	18	36	1.76
46925526--46925560	13	2.7	13	86	0	52	31	8	22	37	1.85
46925387--46925661	136	2.0	136	99	0	541	40	6	16	36	1.74
46925796--46925855	19	3.1	18	79	15	50	50	1	1	46	1.21
46935405--46935521	59	2.0	59	100	0	234	25	23	3	47	1.68
46936934--46936988	21	2.7	21	88	2	76	12	12	14	60	1.60
46939225--46939267	22	2.0	22	95	0	77	30	25	23	20	1.99
46950198--46950287	43	2.1	43	80	10	96	28	17	24	28	1.97
46956488--46956559	37	1.9	37	97	0	135	37	22	9	30	1.86
46958370--46958610	119	2.0	119	82	6	292	22	28	21	27	1.99
46963295--46963418	50	2.6	47	81	11	139	28	17	30	23	1.97
46969488--46969559	35	2.1	35	100	0	144	26	26	16	30	1.97
46970036--46970084	24	2.0	24	96	0	89	38	22	4	34	1.73
46978110--46978150	22	1.9	22	95	5	75	17	29	43	9	1.80
46979342--46979512	46	3.7	46	80	7	159	23	27	19	29	1.98
46979390--46979515	47	2.7	45	83	9	155	25	29	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46982662--46982686	10	2.5	10	100	0	50	16	0	28	56	1.41
46983455--46983613	64	2.5	65	80	5	171	26	30	17	25	1.97
46986162--46986273	43	2.6	43	84	5	129	31	28	14	25	1.95
47001647--47001691	22	2.1	22	83	4	56	66	15	6	11	1.42
47003917--47003974	30	2.0	29	90	10	91	29	15	24	31	1.95
47006107--47006261	43	3.6	43	91	0	256	30	33	23	12	1.92
47006254--47006358	38	2.8	38	85	0	138	30	27	20	21	1.98
47006094--47006282	86	2.2	86	87	1	274	30	33	22	13	1.93
47020681--47020760	40	2.0	40	97	0	151	33	22	6	37	1.79
47023795--47023876	42	2.0	42	85	0	110	25	20	30	23	1.99
47027352--47027388	15	2.5	15	95	0	65	21	21	18	37	1.94
47032057--47032100	19	2.2	20	88	4	63	50	0	13	36	1.42
47036382--47036467	43	2.0	42	93	2	145	39	12	13	33	1.83
47036447--47036483	16	2.3	16	95	0	65	54	13	5	27	1.61
47039347--47039397	18	2.8	19	80	14	63	23	1	3	70	1.14
47043568--47043605	17	2.2	18	90	4	60	15	2	0	81	0.80
47043568--47043609	6	7.0	6	84	10	59	16	2	0	80	0.81
47045452--47045707	55	4.8	53	78	7	193	22	23	17	36	1.94
47045499--47045699	108	1.8	110	84	4	273	22	23	17	35	1.95
47046876--47046928	26	2.0	26	100	0	106	24	22	26	26	2.00
47053940--47054141	46	4.3	46	77	9	162	23	30	19	27	1.98
47054147--47054192	22	2.1	22	100	0	92	30	26	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47057846--47057912	27	2.4	28	80	11	68	64	2	0	32	1.09
47067570--47067610	21	2.0	21	90	0	64	31	26	12	29	1.92
47069442--47069506	33	1.9	34	87	3	96	33	0	4	61	1.16
47070584--47070614	16	1.9	16	93	0	53	32	6	0	61	1.21
47072748--47072778	12	2.6	12	89	0	53	70	0	12	16	1.16
47074962--47075028	14	4.7	14	87	3	98	38	16	5	38	1.73
47075978--47076023	10	4.5	10	88	2	56	50	6	0	43	1.28
47075979--47076016	10	3.8	10	92	0	58	47	5	0	47	1.24
47097318--47097412	28	3.5	26	80	9	91	18	11	13	55	1.68
47098099--47098231	69	1.9	68	83	1	167	21	15	16	46	1.84
47101213--47101269	28	2.0	29	89	6	89	56	8	3	31	1.47
47103468--47103504	18	2.0	19	89	5	58	35	0	2	62	1.10
47115027--47115095	33	2.1	33	94	0	120	34	8	4	52	1.52
47118367--47118433	25	2.7	24	77	9	64	58	5	1	34	1.32
47127799--47127836	13	2.9	14	80	11	53	21	10	15	52	1.72
47128188--47128213	13	2.0	13	100	0	52	38	7	15	38	1.76
47130706--47130862	42	3.7	41	76	5	143	33	15	19	31	1.93
47131085--47131189	40	2.6	40	83	4	122	33	20	16	29	1.95
47131555--47131601	14	3.6	14	72	21	57	44	0	10	44	1.38
47131551--47131600	24	2.1	24	100	0	100	46	0	12	42	1.41
47131610--47131654	14	3.2	14	87	0	63	24	0	26	48	1.51
47131731--47131812	7	11.6	7	78	7	67	24	1	39	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47131742--47131837	50	1.9	50	87	4	140	23	1	38	36	1.62
47131707--47131861	57	2.7	57	78	9	163	23	0	36	39	1.60
47131753--47131834	36	2.3	36	82	4	94	25	1	36	36	1.64
47131724--47131847	7	17.4	7	71	9	63	24	0	35	39	1.61
47131694--47131847	14	10.9	14	65	10	62	24	0	34	40	1.60
47132125--47132164	20	2.0	20	85	9	55	55	7	5	32	1.50
47132304--47132562	73	3.2	80	73	12	246	35	12	23	29	1.91
47132191--47132645	152	3.0	149	79	9	490	37	13	21	27	1.91
47136324--47136630	150	2.0	151	99	0	607	48	5	9	37	1.57
47136584--47136643	30	2.0	30	81	12	70	51	3	3	41	1.35
47137030--47137281	9	29.1	9	70	10	82	46	15	1	36	1.54
47137040--47137107	33	2.1	33	91	0	109	51	13	1	33	1.50
47137014--47137263	85	2.9	85	89	1	365	46	14	1	37	1.53
47137125--47137192	33	2.1	33	85	0	91	52	11	2	32	1.53
47142399--47142427	14	2.1	14	93	6	51	34	0	10	55	1.34
47142836--47142892	21	2.7	21	75	0	60	28	17	49	5	1.68
47143132--47143197	31	2.1	31	88	0	96	16	9	21	53	1.71
47143273--47143530	43	6.2	43	81	7	234	27	30	18	24	1.98
47143373--47143483	38	2.9	38	90	0	186	27	37	16	18	1.92
47149380--47149434	20	2.8	20	100	0	110	10	27	38	23	1.88
47153228--47153253	13	2.0	13	100	0	52	38	7	15	38	1.76
47153562--47153770	9	22.0	9	67	18	59	66	0	4	29	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47153577--47153658	28	2.9	30	78	12	84	67	0	1	31	0.99
47153616--47153688	19	3.9	17	74	16	58	71	1	2	24	1.07
47153612--47153692	39	2.1	39	83	4	101	69	1	2	27	1.09
47153949--47154095	9	15.4	9	71	13	73	27	3	2	67	1.18
47153938--47154018	20	4.2	20	76	7	69	24	2	3	69	1.17
47153949--47154079	39	3.3	39	77	8	115	27	3	2	67	1.18
47153990--47154039	19	2.8	17	80	14	55	20	6	2	72	1.16
47153949--47154082	10	13.7	10	71	19	79	27	2	2	67	1.17
47157920--47157987	19	3.6	19	84	9	86	76	2	4	16	1.07
47157920--47157983	6	10.3	6	91	3	83	76	3	4	15	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290